Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03813 and BACOVA_03814 are separated by 113 nucleotides BACOVA_03814 and BACOVA_03815 are separated by 454 nucleotides BACOVA_03815 and BACOVA_03816 are separated by 84 nucleotides BACOVA_03816 and BACOVA_03817 are separated by 70 nucleotides
BACOVA_03813: BACOVA_03813 - TonB-dependent receptor, at 157,384 to 159,723
_03813
BACOVA_03814: BACOVA_03814 - hypothetical protein, at 159,837 to 159,983
_03814
BACOVA_03815: BACOVA_03815 - TonB-dependent receptor plug domain protein, at 160,438 to 162,624
_03815
BACOVA_03816: BACOVA_03816 - hypothetical protein, at 162,709 to 163,065
_03816
BACOVA_03817: BACOVA_03817 - TrkA C-terminal domain protein, at 163,136 to 164,734
_03817
Position (kb) 160
161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.459 kb on - strand, within BACOVA_03813 at 159.471 kb on + strand, within BACOVA_03813 at 159.617 kb on - strand at 159.759 kb on - strand at 159.762 kb on - strand at 159.807 kb on - strand at 159.807 kb on - strand at 159.811 kb on + strand at 159.812 kb on - strand at 159.812 kb on - strand at 159.868 kb on - strand, within BACOVA_03814 at 159.868 kb on - strand, within BACOVA_03814 at 159.925 kb on - strand, within BACOVA_03814 at 159.933 kb on + strand, within BACOVA_03814 at 159.933 kb on + strand, within BACOVA_03814 at 159.933 kb on + strand, within BACOVA_03814 at 159.934 kb on - strand, within BACOVA_03814 at 159.934 kb on - strand, within BACOVA_03814 at 159.958 kb on - strand, within BACOVA_03814 at 160.002 kb on + strand at 160.002 kb on + strand at 160.023 kb on - strand at 160.029 kb on - strand at 160.070 kb on + strand at 160.135 kb on - strand at 160.155 kb on + strand at 160.156 kb on - strand at 160.157 kb on + strand at 160.158 kb on - strand at 160.165 kb on + strand at 160.166 kb on - strand at 160.197 kb on + strand at 160.198 kb on - strand at 160.198 kb on - strand at 160.211 kb on - strand at 160.242 kb on + strand at 160.271 kb on + strand at 160.275 kb on + strand at 160.276 kb on - strand at 160.287 kb on - strand at 160.355 kb on + strand at 160.355 kb on + strand at 160.356 kb on - strand at 160.359 kb on + strand at 160.360 kb on - strand at 160.458 kb on - strand at 160.577 kb on + strand at 160.577 kb on + strand at 160.578 kb on - strand at 160.596 kb on + strand at 160.597 kb on - strand at 160.597 kb on - strand at 160.601 kb on - strand at 160.620 kb on - strand at 160.641 kb on - strand at 160.641 kb on - strand at 160.641 kb on - strand at 160.752 kb on + strand, within BACOVA_03815 at 160.761 kb on - strand, within BACOVA_03815 at 160.761 kb on - strand, within BACOVA_03815 at 160.815 kb on - strand, within BACOVA_03815 at 160.821 kb on + strand, within BACOVA_03815 at 160.822 kb on - strand, within BACOVA_03815 at 160.867 kb on + strand, within BACOVA_03815 at 160.867 kb on + strand, within BACOVA_03815 at 160.876 kb on + strand, within BACOVA_03815 at 160.877 kb on - strand, within BACOVA_03815 at 160.897 kb on + strand, within BACOVA_03815 at 160.935 kb on - strand, within BACOVA_03815 at 160.939 kb on - strand, within BACOVA_03815 at 161.075 kb on + strand, within BACOVA_03815 at 161.094 kb on + strand, within BACOVA_03815 at 161.112 kb on - strand, within BACOVA_03815 at 161.157 kb on + strand, within BACOVA_03815 at 161.252 kb on - strand, within BACOVA_03815 at 161.274 kb on + strand, within BACOVA_03815 at 161.275 kb on - strand, within BACOVA_03815 at 161.275 kb on - strand, within BACOVA_03815 at 161.275 kb on - strand, within BACOVA_03815 at 161.354 kb on + strand, within BACOVA_03815 at 161.360 kb on + strand, within BACOVA_03815 at 161.432 kb on + strand, within BACOVA_03815 at 161.433 kb on - strand, within BACOVA_03815 at 161.433 kb on - strand, within BACOVA_03815 at 161.630 kb on - strand, within BACOVA_03815 at 161.660 kb on + strand, within BACOVA_03815 at 161.758 kb on - strand, within BACOVA_03815 at 161.758 kb on - strand, within BACOVA_03815 at 161.760 kb on - strand, within BACOVA_03815 at 161.809 kb on - strand, within BACOVA_03815 at 161.838 kb on + strand, within BACOVA_03815 at 161.839 kb on - strand, within BACOVA_03815 at 161.844 kb on + strand, within BACOVA_03815 at 161.845 kb on - strand, within BACOVA_03815 at 161.856 kb on + strand, within BACOVA_03815 at 161.889 kb on + strand, within BACOVA_03815 at 161.968 kb on + strand, within BACOVA_03815 at 161.968 kb on + strand, within BACOVA_03815 at 161.968 kb on + strand, within BACOVA_03815 at 161.969 kb on - strand, within BACOVA_03815 at 161.969 kb on - strand, within BACOVA_03815 at 161.999 kb on + strand, within BACOVA_03815 at 161.999 kb on + strand, within BACOVA_03815 at 162.000 kb on - strand, within BACOVA_03815 at 162.019 kb on - strand, within BACOVA_03815 at 162.108 kb on + strand, within BACOVA_03815 at 162.159 kb on + strand, within BACOVA_03815 at 162.247 kb on + strand, within BACOVA_03815 at 162.250 kb on + strand, within BACOVA_03815 at 162.251 kb on - strand, within BACOVA_03815 at 162.254 kb on - strand, within BACOVA_03815 at 162.284 kb on - strand, within BACOVA_03815 at 162.345 kb on + strand, within BACOVA_03815 at 162.348 kb on - strand, within BACOVA_03815 at 162.404 kb on + strand, within BACOVA_03815 at 162.405 kb on - strand, within BACOVA_03815 at 162.438 kb on + strand at 162.442 kb on - strand at 162.442 kb on - strand at 162.460 kb on + strand at 162.460 kb on + strand at 162.463 kb on - strand at 162.465 kb on - strand at 162.530 kb on - strand at 162.614 kb on + strand at 162.636 kb on + strand at 162.654 kb on - strand at 162.654 kb on - strand at 162.674 kb on - strand at 162.695 kb on + strand at 162.696 kb on - strand at 162.696 kb on - strand at 162.744 kb on + strand at 162.744 kb on + strand at 162.745 kb on - strand, within BACOVA_03816 at 162.777 kb on - strand, within BACOVA_03816 at 162.777 kb on - strand, within BACOVA_03816 at 162.786 kb on - strand, within BACOVA_03816 at 162.809 kb on + strand, within BACOVA_03816 at 162.810 kb on - strand, within BACOVA_03816 at 162.869 kb on - strand, within BACOVA_03816 at 163.018 kb on - strand, within BACOVA_03816 at 163.022 kb on - strand, within BACOVA_03816 at 163.034 kb on + strand at 163.035 kb on + strand at 163.042 kb on - strand at 163.101 kb on - strand at 163.141 kb on - strand at 163.182 kb on - strand at 163.209 kb on + strand at 163.209 kb on + strand at 163.210 kb on - strand at 163.215 kb on - strand at 163.229 kb on - strand at 163.347 kb on - strand, within BACOVA_03817 at 163.429 kb on + strand, within BACOVA_03817 at 163.508 kb on - strand, within BACOVA_03817 at 163.531 kb on + strand, within BACOVA_03817 at 163.557 kb on - strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.619 kb on + strand, within BACOVA_03817
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 159,459 - BACOVA_03813 0.89 -0.2 159,471 + BACOVA_03813 0.89 -0.2 159,617 - -0.7 159,759 - +0.1 159,762 - -0.2 159,807 - +2.4 159,807 - +0.4 159,811 + -0.4 159,812 - -0.4 159,812 - -1.4 159,868 - BACOVA_03814 0.21 +0.7 159,868 - BACOVA_03814 0.21 +0.8 159,925 - BACOVA_03814 0.60 +0.3 159,933 + BACOVA_03814 0.65 +1.1 159,933 + BACOVA_03814 0.65 +1.8 159,933 + BACOVA_03814 0.65 +0.8 159,934 - BACOVA_03814 0.66 +1.4 159,934 - BACOVA_03814 0.66 +0.8 159,958 - BACOVA_03814 0.82 +1.7 160,002 + +0.1 160,002 + -0.6 160,023 - -1.0 160,029 - -2.1 160,070 + -0.6 160,135 - -0.4 160,155 + +0.1 160,156 - -1.0 160,157 + +1.8 160,158 - +0.4 160,165 + -0.2 160,166 - +0.1 160,197 + +1.4 160,198 - -0.7 160,198 - +1.8 160,211 - -0.4 160,242 + +2.4 160,271 + +2.4 160,275 + +0.4 160,276 - -0.6 160,287 - +1.7 160,355 + -1.9 160,355 + +1.2 160,356 - -0.2 160,359 + +0.4 160,360 - -0.7 160,458 - -0.9 160,577 + +0.4 160,577 + -0.4 160,578 - -1.0 160,596 + -1.3 160,597 - -0.2 160,597 - -0.7 160,601 - +0.8 160,620 - +0.1 160,641 - -0.2 160,641 - -0.2 160,641 - -1.4 160,752 + BACOVA_03815 0.14 +0.1 160,761 - BACOVA_03815 0.15 -0.9 160,761 - BACOVA_03815 0.15 +0.8 160,815 - BACOVA_03815 0.17 -1.2 160,821 + BACOVA_03815 0.18 -0.2 160,822 - BACOVA_03815 0.18 -0.9 160,867 + BACOVA_03815 0.20 -1.3 160,867 + BACOVA_03815 0.20 -0.6 160,876 + BACOVA_03815 0.20 -1.7 160,877 - BACOVA_03815 0.20 +0.4 160,897 + BACOVA_03815 0.21 -1.4 160,935 - BACOVA_03815 0.23 +0.1 160,939 - BACOVA_03815 0.23 +0.2 161,075 + BACOVA_03815 0.29 -0.6 161,094 + BACOVA_03815 0.30 -0.6 161,112 - BACOVA_03815 0.31 -0.5 161,157 + BACOVA_03815 0.33 -0.6 161,252 - BACOVA_03815 0.37 -1.3 161,274 + BACOVA_03815 0.38 +1.0 161,275 - BACOVA_03815 0.38 -1.4 161,275 - BACOVA_03815 0.38 +1.7 161,275 - BACOVA_03815 0.38 +1.4 161,354 + BACOVA_03815 0.42 +0.7 161,360 + BACOVA_03815 0.42 +1.4 161,432 + BACOVA_03815 0.45 -0.2 161,433 - BACOVA_03815 0.45 -0.7 161,433 - BACOVA_03815 0.45 -0.2 161,630 - BACOVA_03815 0.55 +0.4 161,660 + BACOVA_03815 0.56 -0.3 161,758 - BACOVA_03815 0.60 -1.8 161,758 - BACOVA_03815 0.60 +0.1 161,760 - BACOVA_03815 0.60 +2.4 161,809 - BACOVA_03815 0.63 -1.5 161,838 + BACOVA_03815 0.64 -0.4 161,839 - BACOVA_03815 0.64 -3.1 161,844 + BACOVA_03815 0.64 -1.2 161,845 - BACOVA_03815 0.64 +1.0 161,856 + BACOVA_03815 0.65 -0.7 161,889 + BACOVA_03815 0.66 +0.8 161,968 + BACOVA_03815 0.70 +0.8 161,968 + BACOVA_03815 0.70 +0.1 161,968 + BACOVA_03815 0.70 +2.4 161,969 - BACOVA_03815 0.70 +1.7 161,969 - BACOVA_03815 0.70 +1.4 161,999 + BACOVA_03815 0.71 +0.1 161,999 + BACOVA_03815 0.71 -1.2 162,000 - BACOVA_03815 0.71 +0.6 162,019 - BACOVA_03815 0.72 -1.5 162,108 + BACOVA_03815 0.76 -0.9 162,159 + BACOVA_03815 0.79 +0.4 162,247 + BACOVA_03815 0.83 +0.3 162,250 + BACOVA_03815 0.83 -0.2 162,251 - BACOVA_03815 0.83 +1.0 162,254 - BACOVA_03815 0.83 +0.8 162,284 - BACOVA_03815 0.84 +0.1 162,345 + BACOVA_03815 0.87 +0.1 162,348 - BACOVA_03815 0.87 -1.6 162,404 + BACOVA_03815 0.90 -0.2 162,405 - BACOVA_03815 0.90 -2.1 162,438 + +0.6 162,442 - +0.8 162,442 - -0.2 162,460 + +0.1 162,460 + -0.2 162,463 - -0.0 162,465 - +0.1 162,530 - -1.0 162,614 + +0.4 162,636 + -0.2 162,654 - -2.0 162,654 - +2.4 162,674 - -0.7 162,695 + +0.4 162,696 - +0.3 162,696 - +0.8 162,744 + -0.6 162,744 + -1.2 162,745 - BACOVA_03816 0.10 +1.1 162,777 - BACOVA_03816 0.19 -0.6 162,777 - BACOVA_03816 0.19 +0.9 162,786 - BACOVA_03816 0.22 +0.1 162,809 + BACOVA_03816 0.28 +0.5 162,810 - BACOVA_03816 0.28 -0.9 162,869 - BACOVA_03816 0.45 -0.3 163,018 - BACOVA_03816 0.87 -1.9 163,022 - BACOVA_03816 0.88 -1.3 163,034 + -1.2 163,035 + -2.0 163,042 - -0.1 163,101 - -1.3 163,141 - -1.9 163,182 - +0.4 163,209 + +0.1 163,209 + -0.0 163,210 - -1.3 163,215 - -0.2 163,229 - +2.0 163,347 - BACOVA_03817 0.13 -0.4 163,429 + BACOVA_03817 0.18 +0.4 163,508 - BACOVA_03817 0.23 -0.2 163,531 + BACOVA_03817 0.25 +0.9 163,557 - BACOVA_03817 0.26 +0.1 163,615 + BACOVA_03817 0.30 -0.6 163,615 + BACOVA_03817 0.30 +0.4 163,615 + BACOVA_03817 0.30 +0.4 163,619 + BACOVA_03817 0.30 -1.0
Or see this region's nucleotide sequence