Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03629

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03628 and BACOVA_03629 are separated by 53 nucleotidesBACOVA_03629 and BACOVA_03630 are separated by 210 nucleotides BACOVA_03628: BACOVA_03628 - endonuclease/exonuclease/phosphatase family protein, at 436,181 to 437,131 _03628 BACOVA_03629: BACOVA_03629 - putative alpha-1,2-mannosidase, at 437,185 to 439,467 _03629 BACOVA_03630: BACOVA_03630 - response regulator receiver domain protein, at 439,678 to 443,718 _03630 Position (kb) 437 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 436.314 kb on - strand, within BACOVA_03628at 436.327 kb on - strand, within BACOVA_03628at 436.327 kb on - strand, within BACOVA_03628at 436.330 kb on + strand, within BACOVA_03628at 436.331 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.380 kb on - strand, within BACOVA_03628at 436.382 kb on - strand, within BACOVA_03628at 436.403 kb on - strand, within BACOVA_03628at 436.441 kb on + strand, within BACOVA_03628at 436.441 kb on + strand, within BACOVA_03628at 436.442 kb on - strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.675 kb on + strand, within BACOVA_03628at 436.708 kb on + strand, within BACOVA_03628at 436.708 kb on + strand, within BACOVA_03628at 436.813 kb on + strand, within BACOVA_03628at 436.854 kb on - strand, within BACOVA_03628at 436.863 kb on + strand, within BACOVA_03628at 436.864 kb on - strand, within BACOVA_03628at 436.891 kb on + strand, within BACOVA_03628at 437.051 kb on - strandat 437.064 kb on + strandat 437.108 kb on + strandat 437.137 kb on + strandat 437.151 kb on + strandat 437.151 kb on + strandat 437.204 kb on + strandat 437.204 kb on + strandat 437.205 kb on - strandat 437.205 kb on - strandat 437.209 kb on + strandat 437.210 kb on - strandat 437.268 kb on + strandat 437.272 kb on - strandat 437.280 kb on + strandat 437.370 kb on + strandat 437.370 kb on + strandat 437.440 kb on + strand, within BACOVA_03629at 437.440 kb on + strand, within BACOVA_03629at 437.441 kb on - strand, within BACOVA_03629at 437.446 kb on + strand, within BACOVA_03629at 437.447 kb on + strand, within BACOVA_03629at 437.447 kb on + strand, within BACOVA_03629at 437.448 kb on - strand, within BACOVA_03629at 437.494 kb on + strand, within BACOVA_03629at 437.494 kb on + strand, within BACOVA_03629at 437.495 kb on - strand, within BACOVA_03629at 437.495 kb on - strand, within BACOVA_03629at 437.498 kb on + strand, within BACOVA_03629at 437.556 kb on + strand, within BACOVA_03629at 437.556 kb on + strand, within BACOVA_03629at 437.557 kb on - strand, within BACOVA_03629at 437.558 kb on + strand, within BACOVA_03629at 437.559 kb on - strand, within BACOVA_03629at 437.560 kb on + strand, within BACOVA_03629at 437.560 kb on + strand, within BACOVA_03629at 437.560 kb on + strand, within BACOVA_03629at 437.581 kb on + strand, within BACOVA_03629at 437.582 kb on - strand, within BACOVA_03629at 437.616 kb on - strand, within BACOVA_03629at 437.616 kb on - strand, within BACOVA_03629at 437.628 kb on - strand, within BACOVA_03629at 437.629 kb on + strand, within BACOVA_03629at 437.629 kb on + strand, within BACOVA_03629at 437.629 kb on + strand, within BACOVA_03629at 437.630 kb on - strand, within BACOVA_03629at 437.630 kb on - strand, within BACOVA_03629at 437.643 kb on + strand, within BACOVA_03629at 437.680 kb on + strand, within BACOVA_03629at 437.799 kb on + strand, within BACOVA_03629at 437.800 kb on - strand, within BACOVA_03629at 437.800 kb on - strand, within BACOVA_03629at 437.844 kb on + strand, within BACOVA_03629at 437.844 kb on + strand, within BACOVA_03629at 437.976 kb on + strand, within BACOVA_03629at 437.978 kb on + strand, within BACOVA_03629at 438.019 kb on + strand, within BACOVA_03629at 438.019 kb on + strand, within BACOVA_03629at 438.019 kb on + strand, within BACOVA_03629at 438.020 kb on - strand, within BACOVA_03629at 438.020 kb on - strand, within BACOVA_03629at 438.025 kb on - strand, within BACOVA_03629at 438.042 kb on + strand, within BACOVA_03629at 438.042 kb on + strand, within BACOVA_03629at 438.042 kb on + strand, within BACOVA_03629at 438.043 kb on - strand, within BACOVA_03629at 438.044 kb on + strand, within BACOVA_03629at 438.044 kb on + strand, within BACOVA_03629at 438.045 kb on - strand, within BACOVA_03629at 438.045 kb on - strand, within BACOVA_03629at 438.045 kb on - strand, within BACOVA_03629at 438.045 kb on - strand, within BACOVA_03629at 438.050 kb on + strand, within BACOVA_03629at 438.050 kb on + strand, within BACOVA_03629at 438.051 kb on - strand, within BACOVA_03629at 438.117 kb on - strand, within BACOVA_03629at 438.206 kb on + strand, within BACOVA_03629at 438.207 kb on - strand, within BACOVA_03629at 438.207 kb on - strand, within BACOVA_03629at 438.227 kb on + strand, within BACOVA_03629at 438.227 kb on + strand, within BACOVA_03629at 438.267 kb on + strand, within BACOVA_03629at 438.324 kb on + strand, within BACOVA_03629at 438.325 kb on - strand, within BACOVA_03629at 438.328 kb on + strand, within BACOVA_03629at 438.329 kb on - strand, within BACOVA_03629at 438.329 kb on - strand, within BACOVA_03629at 438.366 kb on - strand, within BACOVA_03629at 438.429 kb on + strand, within BACOVA_03629at 438.429 kb on + strand, within BACOVA_03629at 438.455 kb on + strand, within BACOVA_03629at 438.464 kb on + strand, within BACOVA_03629at 438.491 kb on - strand, within BACOVA_03629at 438.529 kb on + strand, within BACOVA_03629at 438.530 kb on - strand, within BACOVA_03629at 438.550 kb on + strand, within BACOVA_03629at 438.574 kb on + strand, within BACOVA_03629at 438.852 kb on - strand, within BACOVA_03629at 438.935 kb on + strand, within BACOVA_03629at 438.936 kb on - strand, within BACOVA_03629at 438.936 kb on - strand, within BACOVA_03629at 438.968 kb on + strand, within BACOVA_03629at 438.969 kb on - strand, within BACOVA_03629at 439.021 kb on - strand, within BACOVA_03629at 439.039 kb on + strand, within BACOVA_03629at 439.059 kb on - strand, within BACOVA_03629at 439.059 kb on - strand, within BACOVA_03629at 439.065 kb on + strand, within BACOVA_03629at 439.066 kb on - strand, within BACOVA_03629at 439.066 kb on - strand, within BACOVA_03629at 439.066 kb on - strand, within BACOVA_03629at 439.068 kb on - strand, within BACOVA_03629at 439.068 kb on - strand, within BACOVA_03629at 439.068 kb on - strand, within BACOVA_03629at 439.070 kb on + strand, within BACOVA_03629at 439.071 kb on - strand, within BACOVA_03629at 439.071 kb on - strand, within BACOVA_03629at 439.074 kb on - strand, within BACOVA_03629at 439.235 kb on + strand, within BACOVA_03629at 439.236 kb on - strand, within BACOVA_03629at 439.241 kb on + strandat 439.329 kb on + strandat 439.373 kb on + strandat 439.412 kb on + strandat 439.412 kb on + strandat 439.435 kb on + strandat 439.540 kb on - strandat 439.597 kb on + strandat 439.652 kb on + strandat 439.654 kb on + strandat 439.672 kb on + strandat 439.672 kb on + strandat 439.672 kb on + strandat 439.673 kb on - strandat 439.673 kb on - strandat 439.739 kb on - strandat 439.774 kb on + strandat 439.774 kb on + strandat 439.775 kb on - strandat 439.775 kb on - strandat 439.775 kb on - strandat 439.777 kb on - strandat 439.855 kb on - strandat 439.858 kb on + strandat 439.939 kb on + strandat 439.957 kb on + strandat 439.972 kb on + strandat 440.020 kb on + strandat 440.046 kb on + strandat 440.047 kb on - strandat 440.083 kb on + strand, within BACOVA_03630at 440.088 kb on + strand, within BACOVA_03630at 440.092 kb on - strand, within BACOVA_03630at 440.101 kb on + strand, within BACOVA_03630at 440.172 kb on - strand, within BACOVA_03630at 440.222 kb on - strand, within BACOVA_03630at 440.234 kb on - strand, within BACOVA_03630at 440.238 kb on + strand, within BACOVA_03630at 440.239 kb on - strand, within BACOVA_03630at 440.265 kb on + strand, within BACOVA_03630at 440.344 kb on + strand, within BACOVA_03630at 440.344 kb on + strand, within BACOVA_03630at 440.347 kb on + strand, within BACOVA_03630at 440.348 kb on - strand, within BACOVA_03630at 440.351 kb on + strand, within BACOVA_03630at 440.417 kb on + strand, within BACOVA_03630at 440.418 kb on - strand, within BACOVA_03630at 440.465 kb on - strand, within BACOVA_03630

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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436,314 - BACOVA_03628 0.14 -0.2
436,327 - BACOVA_03628 0.15 -0.7
436,327 - BACOVA_03628 0.15 +0.2
436,330 + BACOVA_03628 0.16 -1.6
436,331 - BACOVA_03628 0.16 +0.7
436,348 - BACOVA_03628 0.18 +0.8
436,348 - BACOVA_03628 0.18 -0.2
436,348 - BACOVA_03628 0.18 +0.3
436,379 + BACOVA_03628 0.21 -0.6
436,379 + BACOVA_03628 0.21 +0.3
436,379 + BACOVA_03628 0.21 -2.1
436,380 - BACOVA_03628 0.21 -0.8
436,382 - BACOVA_03628 0.21 +0.4
436,403 - BACOVA_03628 0.23 +0.1
436,441 + BACOVA_03628 0.27 -0.3
436,441 + BACOVA_03628 0.27 +1.1
436,442 - BACOVA_03628 0.27 -0.1
436,506 + BACOVA_03628 0.34 +1.1
436,506 + BACOVA_03628 0.34 -0.9
436,506 + BACOVA_03628 0.34 +1.1
436,506 + BACOVA_03628 0.34 +0.4
436,507 - BACOVA_03628 0.34 +0.9
436,507 - BACOVA_03628 0.34 -0.0
436,507 - BACOVA_03628 0.34 -2.1
436,675 + BACOVA_03628 0.52 -0.7
436,708 + BACOVA_03628 0.55 +0.3
436,708 + BACOVA_03628 0.55 +0.4
436,813 + BACOVA_03628 0.66 -0.2
436,854 - BACOVA_03628 0.71 -1.1
436,863 + BACOVA_03628 0.72 -1.0
436,864 - BACOVA_03628 0.72 +0.6
436,891 + BACOVA_03628 0.75 +0.9
437,051 - +2.7
437,064 + +0.6
437,108 + -0.7
437,137 + -0.5
437,151 + -0.7
437,151 + +3.7
437,204 + -1.2
437,204 + -0.1
437,205 - -0.3
437,205 - +1.0
437,209 + -2.2
437,210 - +1.3
437,268 + +0.4
437,272 - +1.4
437,280 + +0.4
437,370 + +0.1
437,370 + +0.9
437,440 + BACOVA_03629 0.11 +0.3
437,440 + BACOVA_03629 0.11 -0.3
437,441 - BACOVA_03629 0.11 +0.4
437,446 + BACOVA_03629 0.11 +0.8
437,447 + BACOVA_03629 0.11 +0.4
437,447 + BACOVA_03629 0.11 -1.3
437,448 - BACOVA_03629 0.12 +0.1
437,494 + BACOVA_03629 0.14 +0.2
437,494 + BACOVA_03629 0.14 +0.1
437,495 - BACOVA_03629 0.14 +2.1
437,495 - BACOVA_03629 0.14 +0.7
437,498 + BACOVA_03629 0.14 -1.2
437,556 + BACOVA_03629 0.16 +0.4
437,556 + BACOVA_03629 0.16 +0.7
437,557 - BACOVA_03629 0.16 -1.5
437,558 + BACOVA_03629 0.16 +0.7
437,559 - BACOVA_03629 0.16 +0.5
437,560 + BACOVA_03629 0.16 +0.4
437,560 + BACOVA_03629 0.16 +0.7
437,560 + BACOVA_03629 0.16 +0.4
437,581 + BACOVA_03629 0.17 -0.5
437,582 - BACOVA_03629 0.17 -0.6
437,616 - BACOVA_03629 0.19 +1.1
437,616 - BACOVA_03629 0.19 +2.0
437,628 - BACOVA_03629 0.19 +0.9
437,629 + BACOVA_03629 0.19 +0.0
437,629 + BACOVA_03629 0.19 +0.4
437,629 + BACOVA_03629 0.19 +1.0
437,630 - BACOVA_03629 0.19 +0.5
437,630 - BACOVA_03629 0.19 +0.1
437,643 + BACOVA_03629 0.20 +0.5
437,680 + BACOVA_03629 0.22 -1.5
437,799 + BACOVA_03629 0.27 +0.5
437,800 - BACOVA_03629 0.27 +0.7
437,800 - BACOVA_03629 0.27 +0.5
437,844 + BACOVA_03629 0.29 +0.5
437,844 + BACOVA_03629 0.29 +0.3
437,976 + BACOVA_03629 0.35 -1.2
437,978 + BACOVA_03629 0.35 +1.0
438,019 + BACOVA_03629 0.37 -1.7
438,019 + BACOVA_03629 0.37 +0.1
438,019 + BACOVA_03629 0.37 +2.3
438,020 - BACOVA_03629 0.37 -0.0
438,020 - BACOVA_03629 0.37 +0.1
438,025 - BACOVA_03629 0.37 +0.4
438,042 + BACOVA_03629 0.38 +1.7
438,042 + BACOVA_03629 0.38 +1.1
438,042 + BACOVA_03629 0.38 +1.6
438,043 - BACOVA_03629 0.38 +0.1
438,044 + BACOVA_03629 0.38 -0.7
438,044 + BACOVA_03629 0.38 +2.5
438,045 - BACOVA_03629 0.38 +0.3
438,045 - BACOVA_03629 0.38 -0.7
438,045 - BACOVA_03629 0.38 -0.2
438,045 - BACOVA_03629 0.38 +3.0
438,050 + BACOVA_03629 0.38 +2.3
438,050 + BACOVA_03629 0.38 +0.2
438,051 - BACOVA_03629 0.38 +1.1
438,117 - BACOVA_03629 0.41 -0.9
438,206 + BACOVA_03629 0.45 +1.7
438,207 - BACOVA_03629 0.45 +0.0
438,207 - BACOVA_03629 0.45 +0.4
438,227 + BACOVA_03629 0.46 +2.7
438,227 + BACOVA_03629 0.46 +1.7
438,267 + BACOVA_03629 0.47 +1.1
438,324 + BACOVA_03629 0.50 -0.6
438,325 - BACOVA_03629 0.50 -0.1
438,328 + BACOVA_03629 0.50 +1.2
438,329 - BACOVA_03629 0.50 -1.6
438,329 - BACOVA_03629 0.50 -0.6
438,366 - BACOVA_03629 0.52 +0.6
438,429 + BACOVA_03629 0.54 +0.1
438,429 + BACOVA_03629 0.54 +0.5
438,455 + BACOVA_03629 0.56 +0.8
438,464 + BACOVA_03629 0.56 +3.3
438,491 - BACOVA_03629 0.57 -1.5
438,529 + BACOVA_03629 0.59 +0.0
438,530 - BACOVA_03629 0.59 +1.8
438,550 + BACOVA_03629 0.60 +1.4
438,574 + BACOVA_03629 0.61 +0.4
438,852 - BACOVA_03629 0.73 +1.1
438,935 + BACOVA_03629 0.77 +2.4
438,936 - BACOVA_03629 0.77 +0.9
438,936 - BACOVA_03629 0.77 +1.7
438,968 + BACOVA_03629 0.78 +1.7
438,969 - BACOVA_03629 0.78 +1.0
439,021 - BACOVA_03629 0.80 -0.7
439,039 + BACOVA_03629 0.81 +0.8
439,059 - BACOVA_03629 0.82 +2.3
439,059 - BACOVA_03629 0.82 +0.8
439,065 + BACOVA_03629 0.82 +2.5
439,066 - BACOVA_03629 0.82 +1.0
439,066 - BACOVA_03629 0.82 +1.7
439,066 - BACOVA_03629 0.82 +1.1
439,068 - BACOVA_03629 0.82 -1.0
439,068 - BACOVA_03629 0.82 +1.4
439,068 - BACOVA_03629 0.82 +2.2
439,070 + BACOVA_03629 0.83 +0.9
439,071 - BACOVA_03629 0.83 -0.1
439,071 - BACOVA_03629 0.83 +0.8
439,074 - BACOVA_03629 0.83 +2.1
439,235 + BACOVA_03629 0.90 -0.7
439,236 - BACOVA_03629 0.90 +1.7
439,241 + +1.6
439,329 + +0.3
439,373 + +6.1
439,412 + +1.2
439,412 + -0.5
439,435 + +1.4
439,540 - -2.2
439,597 + -0.2
439,652 + +0.4
439,654 + +2.7
439,672 + +3.3
439,672 + -0.9
439,672 + +1.1
439,673 - -0.7
439,673 - -0.6
439,739 - +1.7
439,774 + +1.1
439,774 + +0.7
439,775 - -2.1
439,775 - +1.1
439,775 - -1.6
439,777 - +0.0
439,855 - -0.9
439,858 + -0.2
439,939 + +1.7
439,957 + +0.2
439,972 + +0.6
440,020 + -0.1
440,046 + -0.1
440,047 - -0.1
440,083 + BACOVA_03630 0.10 +1.1
440,088 + BACOVA_03630 0.10 -1.0
440,092 - BACOVA_03630 0.10 -0.5
440,101 + BACOVA_03630 0.10 -0.7
440,172 - BACOVA_03630 0.12 -0.7
440,222 - BACOVA_03630 0.13 -1.0
440,234 - BACOVA_03630 0.14 +0.1
440,238 + BACOVA_03630 0.14 -0.3
440,239 - BACOVA_03630 0.14 -1.7
440,265 + BACOVA_03630 0.15 +0.7
440,344 + BACOVA_03630 0.16 +0.4
440,344 + BACOVA_03630 0.16 -2.7
440,347 + BACOVA_03630 0.17 -0.0
440,348 - BACOVA_03630 0.17 -0.5
440,351 + BACOVA_03630 0.17 -0.6
440,417 + BACOVA_03630 0.18 +1.4
440,418 - BACOVA_03630 0.18 -1.5
440,465 - BACOVA_03630 0.19 +1.1

Or see this region's nucleotide sequence