Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03000 and BACOVA_03001 are separated by 199 nucleotides BACOVA_03001 and BACOVA_03002 are separated by 223 nucleotides BACOVA_03002 and BACOVA_03003 are separated by 76 nucleotides BACOVA_03003 and BACOVA_03004 are separated by 5 nucleotides
BACOVA_02999: BACOVA_02999 - hypothetical protein, at 72,646 to 73,155
_02999
BACOVA_03000: BACOVA_03000 - hypothetical protein, at 73,085 to 73,192
_03000
BACOVA_03001: BACOVA_03001 - tRNA-Met, at 73,392 to 73,465
_03001
BACOVA_03002: BACOVA_03002 - hypothetical protein, at 73,689 to 74,075
_03002
BACOVA_03003: BACOVA_03003 - permease, YjgP/YjgQ family, at 74,152 to 76,050
_03003
BACOVA_03004: BACOVA_03004 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 76,056 to 77,273
_03004
Position (kb) 74
75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 73.161 kb on + strand, within BACOVA_03000 at 73.161 kb on + strand, within BACOVA_03000 at 73.162 kb on - strand, within BACOVA_03000 at 73.162 kb on - strand, within BACOVA_03000 at 73.171 kb on + strand, within BACOVA_03000 at 73.191 kb on - strand at 73.287 kb on + strand at 73.293 kb on + strand at 73.294 kb on - strand at 73.297 kb on + strand at 73.309 kb on + strand at 73.314 kb on - strand at 73.314 kb on - strand at 73.572 kb on + strand at 73.573 kb on - strand at 73.614 kb on - strand at 73.636 kb on + strand at 73.637 kb on - strand at 73.757 kb on + strand, within BACOVA_03002 at 73.758 kb on - strand, within BACOVA_03002 at 73.758 kb on - strand, within BACOVA_03002 at 73.763 kb on + strand, within BACOVA_03002 at 73.763 kb on + strand, within BACOVA_03002 at 73.819 kb on + strand, within BACOVA_03002 at 73.823 kb on - strand, within BACOVA_03002 at 73.950 kb on + strand, within BACOVA_03002 at 73.951 kb on - strand, within BACOVA_03002 at 73.951 kb on - strand, within BACOVA_03002 at 73.951 kb on - strand, within BACOVA_03002 at 73.971 kb on + strand, within BACOVA_03002 at 73.972 kb on - strand, within BACOVA_03002 at 73.972 kb on - strand, within BACOVA_03002 at 73.972 kb on - strand, within BACOVA_03002 at 74.012 kb on - strand, within BACOVA_03002 at 76.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 73,161 + BACOVA_03000 0.70 +2.3 73,161 + BACOVA_03000 0.70 -0.5 73,162 - BACOVA_03000 0.71 +0.6 73,162 - BACOVA_03000 0.71 +0.6 73,171 + BACOVA_03000 0.80 +0.1 73,191 - +0.8 73,287 + -1.9 73,293 + +0.8 73,294 - -1.1 73,297 + -1.3 73,309 + +2.0 73,314 - -0.1 73,314 - -0.3 73,572 + -0.2 73,573 - -1.8 73,614 - -0.7 73,636 + -1.3 73,637 - -1.2 73,757 + BACOVA_03002 0.18 +6.1 73,758 - BACOVA_03002 0.18 -0.2 73,758 - BACOVA_03002 0.18 +3.0 73,763 + BACOVA_03002 0.19 +3.0 73,763 + BACOVA_03002 0.19 +1.1 73,819 + BACOVA_03002 0.34 +1.6 73,823 - BACOVA_03002 0.35 -0.2 73,950 + BACOVA_03002 0.67 +2.1 73,951 - BACOVA_03002 0.68 +1.6 73,951 - BACOVA_03002 0.68 +1.9 73,951 - BACOVA_03002 0.68 +3.2 73,971 + BACOVA_03002 0.73 +2.6 73,972 - BACOVA_03002 0.73 +3.9 73,972 - BACOVA_03002 0.73 +3.6 73,972 - BACOVA_03002 0.73 +2.6 74,012 - BACOVA_03002 0.83 +2.2 76,048 + +0.2
Or see this region's nucleotide sequence