Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02787 and BACOVA_02788 are separated by 205 nucleotides BACOVA_02788 and BACOVA_02789 are separated by 170 nucleotides
BACOVA_02787: BACOVA_02787 - TonB-linked outer membrane protein, SusC/RagA family, at 238,704 to 241,709
_02787
BACOVA_02788: BACOVA_02788 - hypothetical protein, at 241,915 to 243,564
_02788
BACOVA_02789: BACOVA_02789 - hypothetical protein, at 243,735 to 244,868
_02789
Position (kb) 241
242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 240.942 kb on - strand, within BACOVA_02787 at 240.957 kb on - strand, within BACOVA_02787 at 241.049 kb on - strand, within BACOVA_02787 at 241.052 kb on + strand, within BACOVA_02787 at 241.053 kb on - strand, within BACOVA_02787 at 241.077 kb on + strand, within BACOVA_02787 at 241.103 kb on + strand, within BACOVA_02787 at 241.160 kb on + strand, within BACOVA_02787 at 241.231 kb on - strand, within BACOVA_02787 at 241.271 kb on + strand, within BACOVA_02787 at 241.274 kb on + strand, within BACOVA_02787 at 241.274 kb on + strand, within BACOVA_02787 at 241.275 kb on - strand, within BACOVA_02787 at 241.317 kb on + strand, within BACOVA_02787 at 241.359 kb on + strand, within BACOVA_02787 at 241.366 kb on - strand, within BACOVA_02787 at 241.368 kb on + strand, within BACOVA_02787 at 241.388 kb on + strand, within BACOVA_02787 at 241.404 kb on + strand, within BACOVA_02787 at 241.451 kb on - strand at 241.466 kb on + strand at 241.512 kb on + strand at 241.538 kb on + strand at 241.590 kb on + strand at 241.590 kb on + strand at 241.590 kb on + strand at 241.591 kb on - strand at 241.629 kb on - strand at 241.629 kb on - strand at 241.656 kb on + strand at 241.659 kb on + strand at 241.692 kb on - strand at 241.705 kb on + strand at 241.706 kb on - strand at 241.725 kb on - strand at 241.727 kb on + strand at 241.727 kb on + strand at 241.728 kb on - strand at 241.728 kb on - strand at 241.728 kb on - strand at 241.808 kb on - strand at 241.832 kb on + strand at 241.916 kb on + strand at 241.934 kb on - strand at 242.005 kb on - strand at 242.006 kb on + strand at 242.006 kb on + strand at 242.013 kb on + strand at 242.014 kb on - strand at 242.014 kb on - strand at 242.049 kb on + strand at 242.050 kb on - strand at 242.083 kb on + strand, within BACOVA_02788 at 242.084 kb on - strand, within BACOVA_02788 at 242.085 kb on + strand, within BACOVA_02788 at 242.086 kb on - strand, within BACOVA_02788 at 242.254 kb on - strand, within BACOVA_02788 at 242.254 kb on - strand, within BACOVA_02788 at 242.254 kb on - strand, within BACOVA_02788 at 242.255 kb on + strand, within BACOVA_02788 at 242.255 kb on + strand, within BACOVA_02788 at 242.308 kb on + strand, within BACOVA_02788 at 242.309 kb on - strand, within BACOVA_02788 at 242.309 kb on - strand, within BACOVA_02788 at 242.309 kb on - strand, within BACOVA_02788 at 242.327 kb on + strand, within BACOVA_02788 at 242.328 kb on - strand, within BACOVA_02788 at 242.346 kb on + strand, within BACOVA_02788 at 242.347 kb on - strand, within BACOVA_02788 at 242.349 kb on - strand, within BACOVA_02788 at 242.361 kb on - strand, within BACOVA_02788 at 242.373 kb on + strand, within BACOVA_02788 at 242.374 kb on - strand, within BACOVA_02788 at 242.394 kb on + strand, within BACOVA_02788 at 242.460 kb on + strand, within BACOVA_02788 at 242.464 kb on - strand, within BACOVA_02788 at 242.542 kb on + strand, within BACOVA_02788 at 242.612 kb on + strand, within BACOVA_02788 at 242.613 kb on - strand, within BACOVA_02788 at 242.628 kb on + strand, within BACOVA_02788 at 242.655 kb on + strand, within BACOVA_02788 at 242.656 kb on - strand, within BACOVA_02788 at 242.689 kb on + strand, within BACOVA_02788 at 242.690 kb on - strand, within BACOVA_02788 at 242.711 kb on + strand, within BACOVA_02788 at 242.712 kb on - strand, within BACOVA_02788 at 242.712 kb on - strand, within BACOVA_02788 at 242.724 kb on + strand, within BACOVA_02788 at 242.772 kb on - strand, within BACOVA_02788 at 242.874 kb on - strand, within BACOVA_02788 at 242.877 kb on + strand, within BACOVA_02788 at 242.878 kb on - strand, within BACOVA_02788 at 242.878 kb on - strand, within BACOVA_02788 at 242.878 kb on - strand, within BACOVA_02788 at 242.919 kb on - strand, within BACOVA_02788 at 242.919 kb on - strand, within BACOVA_02788 at 242.922 kb on - strand, within BACOVA_02788 at 242.952 kb on - strand, within BACOVA_02788 at 242.952 kb on - strand, within BACOVA_02788 at 242.963 kb on - strand, within BACOVA_02788 at 242.967 kb on + strand, within BACOVA_02788 at 242.968 kb on - strand, within BACOVA_02788 at 242.974 kb on - strand, within BACOVA_02788 at 242.974 kb on - strand, within BACOVA_02788 at 243.057 kb on - strand, within BACOVA_02788 at 243.059 kb on + strand, within BACOVA_02788 at 243.060 kb on - strand, within BACOVA_02788 at 243.090 kb on - strand, within BACOVA_02788 at 243.107 kb on + strand, within BACOVA_02788 at 243.128 kb on + strand, within BACOVA_02788 at 243.128 kb on + strand, within BACOVA_02788 at 243.129 kb on - strand, within BACOVA_02788 at 243.132 kb on - strand, within BACOVA_02788 at 243.132 kb on - strand, within BACOVA_02788 at 243.132 kb on - strand, within BACOVA_02788 at 243.132 kb on - strand, within BACOVA_02788 at 243.132 kb on - strand, within BACOVA_02788 at 243.134 kb on + strand, within BACOVA_02788 at 243.135 kb on - strand, within BACOVA_02788 at 243.140 kb on + strand, within BACOVA_02788 at 243.181 kb on + strand, within BACOVA_02788 at 243.181 kb on + strand, within BACOVA_02788 at 243.181 kb on + strand, within BACOVA_02788 at 243.181 kb on + strand, within BACOVA_02788 at 243.182 kb on - strand, within BACOVA_02788 at 243.182 kb on - strand, within BACOVA_02788 at 243.200 kb on + strand, within BACOVA_02788 at 243.200 kb on + strand, within BACOVA_02788 at 243.254 kb on + strand, within BACOVA_02788 at 243.265 kb on - strand, within BACOVA_02788 at 243.302 kb on + strand, within BACOVA_02788 at 243.326 kb on + strand, within BACOVA_02788 at 243.366 kb on - strand, within BACOVA_02788 at 243.463 kb on - strand at 243.463 kb on - strand at 243.493 kb on - strand at 243.498 kb on + strand at 243.572 kb on + strand at 243.581 kb on + strand at 243.581 kb on + strand at 243.582 kb on - strand at 243.582 kb on - strand at 243.582 kb on - strand at 243.594 kb on - strand at 243.660 kb on - strand at 243.673 kb on - strand at 243.688 kb on + strand at 243.749 kb on + strand at 243.758 kb on + strand at 243.759 kb on - strand at 243.771 kb on + strand at 243.775 kb on + strand at 243.776 kb on - strand at 243.786 kb on + strand at 243.787 kb on - strand at 243.823 kb on + strand at 243.823 kb on + strand at 243.930 kb on + strand, within BACOVA_02789 at 243.931 kb on - strand, within BACOVA_02789 at 243.934 kb on - strand, within BACOVA_02789 at 243.936 kb on - strand, within BACOVA_02789 at 243.955 kb on - strand, within BACOVA_02789 at 244.083 kb on - strand, within BACOVA_02789 at 244.140 kb on - strand, within BACOVA_02789 at 244.199 kb on + strand, within BACOVA_02789 at 244.199 kb on + strand, within BACOVA_02789 at 244.200 kb on - strand, within BACOVA_02789 at 244.228 kb on + strand, within BACOVA_02789 at 244.237 kb on - strand, within BACOVA_02789 at 244.252 kb on + strand, within BACOVA_02789 at 244.253 kb on - strand, within BACOVA_02789 at 244.253 kb on - strand, within BACOVA_02789 at 244.271 kb on + strand, within BACOVA_02789 at 244.272 kb on - strand, within BACOVA_02789 at 244.328 kb on + strand, within BACOVA_02789 at 244.337 kb on + strand, within BACOVA_02789 at 244.413 kb on + strand, within BACOVA_02789 at 244.414 kb on - strand, within BACOVA_02789 at 244.449 kb on - strand, within BACOVA_02789 at 244.484 kb on - strand, within BACOVA_02789 at 244.512 kb on + strand, within BACOVA_02789 at 244.513 kb on - strand, within BACOVA_02789 at 244.516 kb on + strand, within BACOVA_02789 at 244.516 kb on + strand, within BACOVA_02789 at 244.516 kb on + strand, within BACOVA_02789 at 244.517 kb on - strand, within BACOVA_02789 at 244.529 kb on + strand, within BACOVA_02789 at 244.530 kb on - strand, within BACOVA_02789 at 244.538 kb on - strand, within BACOVA_02789 at 244.539 kb on + strand, within BACOVA_02789 at 244.540 kb on - strand, within BACOVA_02789 at 244.542 kb on - strand, within BACOVA_02789
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 240,942 - BACOVA_02787 0.74 +0.2 240,957 - BACOVA_02787 0.75 -1.5 241,049 - BACOVA_02787 0.78 -0.7 241,052 + BACOVA_02787 0.78 +0.4 241,053 - BACOVA_02787 0.78 +1.2 241,077 + BACOVA_02787 0.79 +7.2 241,103 + BACOVA_02787 0.80 -0.8 241,160 + BACOVA_02787 0.82 -1.5 241,231 - BACOVA_02787 0.84 -0.7 241,271 + BACOVA_02787 0.85 +1.7 241,274 + BACOVA_02787 0.85 +2.7 241,274 + BACOVA_02787 0.85 -0.1 241,275 - BACOVA_02787 0.86 +0.0 241,317 + BACOVA_02787 0.87 -1.0 241,359 + BACOVA_02787 0.88 +0.5 241,366 - BACOVA_02787 0.89 -0.1 241,368 + BACOVA_02787 0.89 -0.3 241,388 + BACOVA_02787 0.89 +2.7 241,404 + BACOVA_02787 0.90 -1.8 241,451 - -0.4 241,466 + -1.5 241,512 + -0.1 241,538 + +0.3 241,590 + -1.2 241,590 + -1.5 241,590 + -0.6 241,591 - -0.6 241,629 - +1.2 241,629 - -0.6 241,656 + -0.7 241,659 + +0.2 241,692 - +0.1 241,705 + -0.2 241,706 - +0.7 241,725 - -0.3 241,727 + -0.3 241,727 + +2.3 241,728 - +0.7 241,728 - -0.4 241,728 - -0.8 241,808 - +0.7 241,832 + -1.6 241,916 + +0.0 241,934 - -0.8 242,005 - -0.3 242,006 + -0.6 242,006 + -1.3 242,013 + +2.1 242,014 - +0.7 242,014 - +1.2 242,049 + -0.4 242,050 - -0.7 242,083 + BACOVA_02788 0.10 -0.5 242,084 - BACOVA_02788 0.10 -1.2 242,085 + BACOVA_02788 0.10 -0.7 242,086 - BACOVA_02788 0.10 -0.5 242,254 - BACOVA_02788 0.21 +1.7 242,254 - BACOVA_02788 0.21 +0.7 242,254 - BACOVA_02788 0.21 +0.7 242,255 + BACOVA_02788 0.21 -0.7 242,255 + BACOVA_02788 0.21 -0.6 242,308 + BACOVA_02788 0.24 -1.8 242,309 - BACOVA_02788 0.24 -2.0 242,309 - BACOVA_02788 0.24 +0.7 242,309 - BACOVA_02788 0.24 +0.7 242,327 + BACOVA_02788 0.25 +1.2 242,328 - BACOVA_02788 0.25 +1.2 242,346 + BACOVA_02788 0.26 -2.1 242,347 - BACOVA_02788 0.26 -0.7 242,349 - BACOVA_02788 0.26 +0.6 242,361 - BACOVA_02788 0.27 +1.7 242,373 + BACOVA_02788 0.28 -0.1 242,374 - BACOVA_02788 0.28 +1.3 242,394 + BACOVA_02788 0.29 +0.2 242,460 + BACOVA_02788 0.33 +1.2 242,464 - BACOVA_02788 0.33 +0.7 242,542 + BACOVA_02788 0.38 -0.4 242,612 + BACOVA_02788 0.42 -0.7 242,613 - BACOVA_02788 0.42 +0.1 242,628 + BACOVA_02788 0.43 -0.7 242,655 + BACOVA_02788 0.45 +0.9 242,656 - BACOVA_02788 0.45 -0.1 242,689 + BACOVA_02788 0.47 -0.9 242,690 - BACOVA_02788 0.47 -0.4 242,711 + BACOVA_02788 0.48 +0.3 242,712 - BACOVA_02788 0.48 -2.8 242,712 - BACOVA_02788 0.48 +0.6 242,724 + BACOVA_02788 0.49 +2.7 242,772 - BACOVA_02788 0.52 +1.0 242,874 - BACOVA_02788 0.58 -0.3 242,877 + BACOVA_02788 0.58 -0.6 242,878 - BACOVA_02788 0.58 -0.9 242,878 - BACOVA_02788 0.58 +1.3 242,878 - BACOVA_02788 0.58 +3.7 242,919 - BACOVA_02788 0.61 -0.8 242,919 - BACOVA_02788 0.61 +0.2 242,922 - BACOVA_02788 0.61 -0.4 242,952 - BACOVA_02788 0.63 -2.0 242,952 - BACOVA_02788 0.63 -0.3 242,963 - BACOVA_02788 0.64 -0.4 242,967 + BACOVA_02788 0.64 -0.4 242,968 - BACOVA_02788 0.64 -1.2 242,974 - BACOVA_02788 0.64 -0.7 242,974 - BACOVA_02788 0.64 -0.8 243,057 - BACOVA_02788 0.69 -0.1 243,059 + BACOVA_02788 0.69 +1.7 243,060 - BACOVA_02788 0.69 +0.2 243,090 - BACOVA_02788 0.71 -1.1 243,107 + BACOVA_02788 0.72 -1.0 243,128 + BACOVA_02788 0.74 -1.4 243,128 + BACOVA_02788 0.74 +0.3 243,129 - BACOVA_02788 0.74 +0.4 243,132 - BACOVA_02788 0.74 -1.1 243,132 - BACOVA_02788 0.74 -0.6 243,132 - BACOVA_02788 0.74 +1.7 243,132 - BACOVA_02788 0.74 +0.9 243,132 - BACOVA_02788 0.74 -1.0 243,134 + BACOVA_02788 0.74 -2.0 243,135 - BACOVA_02788 0.74 -0.1 243,140 + BACOVA_02788 0.74 -0.7 243,181 + BACOVA_02788 0.77 +0.0 243,181 + BACOVA_02788 0.77 -0.1 243,181 + BACOVA_02788 0.77 -0.4 243,181 + BACOVA_02788 0.77 -0.2 243,182 - BACOVA_02788 0.77 +1.7 243,182 - BACOVA_02788 0.77 -0.3 243,200 + BACOVA_02788 0.78 -0.3 243,200 + BACOVA_02788 0.78 -1.5 243,254 + BACOVA_02788 0.81 -0.6 243,265 - BACOVA_02788 0.82 +0.2 243,302 + BACOVA_02788 0.84 -0.7 243,326 + BACOVA_02788 0.86 -0.4 243,366 - BACOVA_02788 0.88 -0.1 243,463 - -0.9 243,463 - +1.0 243,493 - -0.6 243,498 + +0.2 243,572 + -0.4 243,581 + -1.0 243,581 + -0.8 243,582 - -1.5 243,582 - -1.1 243,582 - +0.2 243,594 - -0.7 243,660 - +2.7 243,673 - -0.4 243,688 + -0.0 243,749 + -0.0 243,758 + -0.7 243,759 - +0.4 243,771 + -1.1 243,775 + +0.1 243,776 - -0.8 243,786 + -0.4 243,787 - -0.9 243,823 + -0.3 243,823 + +1.2 243,930 + BACOVA_02789 0.17 -1.1 243,931 - BACOVA_02789 0.17 +0.4 243,934 - BACOVA_02789 0.18 +0.4 243,936 - BACOVA_02789 0.18 -0.6 243,955 - BACOVA_02789 0.19 +1.2 244,083 - BACOVA_02789 0.31 -0.2 244,140 - BACOVA_02789 0.36 -1.3 244,199 + BACOVA_02789 0.41 -0.1 244,199 + BACOVA_02789 0.41 +0.2 244,200 - BACOVA_02789 0.41 -0.5 244,228 + BACOVA_02789 0.43 -0.5 244,237 - BACOVA_02789 0.44 -1.0 244,252 + BACOVA_02789 0.46 -1.3 244,253 - BACOVA_02789 0.46 -0.5 244,253 - BACOVA_02789 0.46 +0.1 244,271 + BACOVA_02789 0.47 +1.2 244,272 - BACOVA_02789 0.47 +0.7 244,328 + BACOVA_02789 0.52 -0.9 244,337 + BACOVA_02789 0.53 -1.3 244,413 + BACOVA_02789 0.60 +0.9 244,414 - BACOVA_02789 0.60 -1.4 244,449 - BACOVA_02789 0.63 +1.2 244,484 - BACOVA_02789 0.66 +0.7 244,512 + BACOVA_02789 0.69 +0.8 244,513 - BACOVA_02789 0.69 +0.2 244,516 + BACOVA_02789 0.69 -0.9 244,516 + BACOVA_02789 0.69 +0.5 244,516 + BACOVA_02789 0.69 +1.4 244,517 - BACOVA_02789 0.69 -0.4 244,529 + BACOVA_02789 0.70 +1.4 244,530 - BACOVA_02789 0.70 +0.2 244,538 - BACOVA_02789 0.71 +0.0 244,539 + BACOVA_02789 0.71 -0.2 244,540 - BACOVA_02789 0.71 -0.4 244,542 - BACOVA_02789 0.71 +1.6
Or see this region's nucleotide sequence