Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02748 and BACOVA_02749 are separated by 90 nucleotides BACOVA_02749 and BACOVA_02750 are separated by 12 nucleotides BACOVA_02750 and BACOVA_02751 are separated by 15 nucleotides
BACOVA_02748: BACOVA_02748 - hypothetical protein, at 188,931 to 190,328
_02748
BACOVA_02749: BACOVA_02749 - hypothetical protein, at 190,419 to 191,111
_02749
BACOVA_02750: BACOVA_02750 - hypothetical protein, at 191,124 to 192,314
_02750
BACOVA_02751: BACOVA_02751 - SusD family protein, at 192,330 to 194,267
_02751
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 190.132 kb on - strand, within BACOVA_02748 at 190.132 kb on - strand, within BACOVA_02748 at 190.142 kb on + strand, within BACOVA_02748 at 190.142 kb on + strand, within BACOVA_02748 at 190.144 kb on + strand, within BACOVA_02748 at 190.175 kb on + strand, within BACOVA_02748 at 190.212 kb on + strand at 190.233 kb on + strand at 190.238 kb on + strand at 190.239 kb on - strand at 190.250 kb on + strand at 190.250 kb on + strand at 190.250 kb on + strand at 190.254 kb on - strand at 190.290 kb on - strand at 190.290 kb on - strand at 190.311 kb on + strand at 190.315 kb on - strand at 190.330 kb on + strand at 190.404 kb on + strand at 190.404 kb on + strand at 190.405 kb on - strand at 190.405 kb on - strand at 190.420 kb on + strand at 190.421 kb on - strand at 190.423 kb on - strand at 190.423 kb on - strand at 190.458 kb on + strand at 190.459 kb on - strand at 190.459 kb on - strand at 190.481 kb on - strand at 190.488 kb on - strand at 190.488 kb on - strand at 190.492 kb on + strand, within BACOVA_02749 at 190.493 kb on - strand, within BACOVA_02749 at 190.493 kb on - strand, within BACOVA_02749 at 190.517 kb on + strand, within BACOVA_02749 at 190.518 kb on - strand, within BACOVA_02749 at 190.553 kb on + strand, within BACOVA_02749 at 190.560 kb on - strand, within BACOVA_02749 at 190.592 kb on + strand, within BACOVA_02749 at 190.625 kb on + strand, within BACOVA_02749 at 190.628 kb on + strand, within BACOVA_02749 at 190.629 kb on - strand, within BACOVA_02749 at 190.659 kb on - strand, within BACOVA_02749 at 190.659 kb on - strand, within BACOVA_02749 at 190.660 kb on - strand, within BACOVA_02749 at 190.670 kb on + strand, within BACOVA_02749 at 190.708 kb on + strand, within BACOVA_02749 at 190.708 kb on + strand, within BACOVA_02749 at 190.720 kb on + strand, within BACOVA_02749 at 190.742 kb on - strand, within BACOVA_02749 at 190.763 kb on + strand, within BACOVA_02749 at 190.784 kb on + strand, within BACOVA_02749 at 190.791 kb on - strand, within BACOVA_02749 at 190.791 kb on - strand, within BACOVA_02749 at 190.808 kb on + strand, within BACOVA_02749 at 190.833 kb on + strand, within BACOVA_02749 at 190.848 kb on + strand, within BACOVA_02749 at 190.869 kb on - strand, within BACOVA_02749 at 190.905 kb on + strand, within BACOVA_02749 at 190.983 kb on - strand, within BACOVA_02749 at 191.002 kb on + strand, within BACOVA_02749 at 191.028 kb on + strand, within BACOVA_02749 at 191.028 kb on + strand, within BACOVA_02749 at 191.029 kb on - strand, within BACOVA_02749 at 191.030 kb on + strand, within BACOVA_02749 at 191.030 kb on + strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.038 kb on - strand, within BACOVA_02749 at 191.081 kb on + strand at 191.130 kb on - strand at 191.174 kb on + strand at 191.175 kb on - strand at 191.194 kb on - strand at 191.194 kb on - strand at 191.261 kb on + strand, within BACOVA_02750 at 191.261 kb on + strand, within BACOVA_02750 at 191.262 kb on - strand, within BACOVA_02750 at 191.262 kb on - strand, within BACOVA_02750 at 191.292 kb on + strand, within BACOVA_02750 at 191.299 kb on - strand, within BACOVA_02750 at 191.426 kb on + strand, within BACOVA_02750 at 191.426 kb on + strand, within BACOVA_02750 at 191.426 kb on + strand, within BACOVA_02750 at 191.429 kb on - strand, within BACOVA_02750 at 191.432 kb on + strand, within BACOVA_02750 at 191.433 kb on - strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.471 kb on + strand, within BACOVA_02750 at 191.471 kb on + strand, within BACOVA_02750 at 191.472 kb on - strand, within BACOVA_02750 at 191.500 kb on + strand, within BACOVA_02750 at 191.500 kb on + strand, within BACOVA_02750 at 191.501 kb on - strand, within BACOVA_02750 at 191.530 kb on + strand, within BACOVA_02750 at 191.530 kb on + strand, within BACOVA_02750 at 191.601 kb on - strand, within BACOVA_02750 at 191.696 kb on + strand, within BACOVA_02750 at 191.702 kb on + strand, within BACOVA_02750 at 191.702 kb on + strand, within BACOVA_02750 at 191.707 kb on + strand, within BACOVA_02750 at 191.707 kb on + strand, within BACOVA_02750 at 191.762 kb on + strand, within BACOVA_02750 at 191.768 kb on + strand, within BACOVA_02750 at 191.769 kb on - strand, within BACOVA_02750 at 191.791 kb on + strand, within BACOVA_02750 at 191.795 kb on + strand, within BACOVA_02750 at 191.961 kb on + strand, within BACOVA_02750 at 191.965 kb on - strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.993 kb on + strand, within BACOVA_02750 at 191.994 kb on - strand, within BACOVA_02750 at 192.045 kb on + strand, within BACOVA_02750 at 192.109 kb on + strand, within BACOVA_02750 at 192.120 kb on - strand, within BACOVA_02750 at 192.180 kb on + strand, within BACOVA_02750 at 192.244 kb on + strand at 192.244 kb on + strand at 192.244 kb on + strand at 192.245 kb on - strand at 192.245 kb on - strand at 192.254 kb on + strand at 192.255 kb on - strand at 192.255 kb on - strand at 192.255 kb on - strand at 192.299 kb on + strand at 192.300 kb on - strand at 192.300 kb on - strand at 192.315 kb on - strand at 192.331 kb on + strand at 192.401 kb on - strand at 192.420 kb on + strand at 192.445 kb on + strand at 192.446 kb on - strand at 192.446 kb on - strand at 192.472 kb on - strand at 192.497 kb on + strand at 192.499 kb on + strand at 192.506 kb on + strand at 192.506 kb on + strand at 192.507 kb on - strand at 192.507 kb on - strand at 192.528 kb on + strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.563 kb on - strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.597 kb on - strand, within BACOVA_02751 at 192.600 kb on + strand, within BACOVA_02751 at 192.600 kb on + strand, within BACOVA_02751 at 192.601 kb on - strand, within BACOVA_02751 at 192.635 kb on - strand, within BACOVA_02751 at 192.678 kb on - strand, within BACOVA_02751 at 192.694 kb on + strand, within BACOVA_02751 at 192.698 kb on - strand, within BACOVA_02751 at 192.698 kb on - strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.702 kb on + strand, within BACOVA_02751 at 192.702 kb on + strand, within BACOVA_02751 at 192.757 kb on + strand, within BACOVA_02751 at 192.758 kb on - strand, within BACOVA_02751 at 192.788 kb on + strand, within BACOVA_02751 at 192.788 kb on + strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.791 kb on + strand, within BACOVA_02751 at 192.799 kb on + strand, within BACOVA_02751 at 192.799 kb on + strand, within BACOVA_02751 at 192.800 kb on - strand, within BACOVA_02751 at 192.800 kb on - strand, within BACOVA_02751 at 192.804 kb on - strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 193.046 kb on - strand, within BACOVA_02751 at 193.072 kb on + strand, within BACOVA_02751 at 193.072 kb on + strand, within BACOVA_02751 at 193.073 kb on - strand, within BACOVA_02751 at 193.075 kb on + strand, within BACOVA_02751 at 193.075 kb on + strand, within BACOVA_02751 at 193.101 kb on + strand, within BACOVA_02751 at 193.127 kb on - strand, within BACOVA_02751 at 193.145 kb on + strand, within BACOVA_02751 at 193.150 kb on - strand, within BACOVA_02751 at 193.195 kb on + strand, within BACOVA_02751 at 193.241 kb on + strand, within BACOVA_02751 at 193.255 kb on - strand, within BACOVA_02751
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 190,132 - BACOVA_02748 0.86 -0.4 190,132 - BACOVA_02748 0.86 -0.4 190,142 + BACOVA_02748 0.87 +0.8 190,142 + BACOVA_02748 0.87 +1.4 190,144 + BACOVA_02748 0.87 -0.1 190,175 + BACOVA_02748 0.89 -1.2 190,212 + -1.2 190,233 + -0.1 190,238 + -1.1 190,239 - +1.2 190,250 + -0.2 190,250 + +0.1 190,250 + +0.1 190,254 - -0.5 190,290 - +1.9 190,290 - -0.9 190,311 + +0.5 190,315 - +2.3 190,330 + -0.2 190,404 + -0.3 190,404 + -0.5 190,405 - -1.6 190,405 - -2.9 190,420 + -0.6 190,421 - -1.4 190,423 - +1.2 190,423 - -0.1 190,458 + +0.8 190,459 - +0.2 190,459 - -1.7 190,481 - -2.2 190,488 - -0.9 190,488 - -2.5 190,492 + BACOVA_02749 0.11 +1.1 190,493 - BACOVA_02749 0.11 +0.8 190,493 - BACOVA_02749 0.11 -0.7 190,517 + BACOVA_02749 0.14 +1.8 190,518 - BACOVA_02749 0.14 -0.2 190,553 + BACOVA_02749 0.19 +0.5 190,560 - BACOVA_02749 0.20 -0.3 190,592 + BACOVA_02749 0.25 -0.9 190,625 + BACOVA_02749 0.30 +0.0 190,628 + BACOVA_02749 0.30 +1.8 190,629 - BACOVA_02749 0.30 -0.1 190,659 - BACOVA_02749 0.35 -0.1 190,659 - BACOVA_02749 0.35 -0.4 190,660 - BACOVA_02749 0.35 -1.1 190,670 + BACOVA_02749 0.36 -0.3 190,708 + BACOVA_02749 0.42 -0.7 190,708 + BACOVA_02749 0.42 -1.2 190,720 + BACOVA_02749 0.43 +0.5 190,742 - BACOVA_02749 0.47 -0.8 190,763 + BACOVA_02749 0.50 -1.6 190,784 + BACOVA_02749 0.53 +1.8 190,791 - BACOVA_02749 0.54 -0.4 190,791 - BACOVA_02749 0.54 +0.9 190,808 + BACOVA_02749 0.56 +1.2 190,833 + BACOVA_02749 0.60 -1.5 190,848 + BACOVA_02749 0.62 +1.3 190,869 - BACOVA_02749 0.65 -0.1 190,905 + BACOVA_02749 0.70 -0.6 190,983 - BACOVA_02749 0.81 +0.8 191,002 + BACOVA_02749 0.84 -1.5 191,028 + BACOVA_02749 0.88 -1.6 191,028 + BACOVA_02749 0.88 +4.5 191,029 - BACOVA_02749 0.88 +1.2 191,030 + BACOVA_02749 0.88 -0.6 191,030 + BACOVA_02749 0.88 +0.4 191,031 - BACOVA_02749 0.88 -0.2 191,031 - BACOVA_02749 0.88 +0.8 191,031 - BACOVA_02749 0.88 +0.8 191,038 - BACOVA_02749 0.89 -0.9 191,081 + +0.5 191,130 - -0.2 191,174 + +1.2 191,175 - -0.5 191,194 - +1.8 191,194 - -0.4 191,261 + BACOVA_02750 0.12 +1.2 191,261 + BACOVA_02750 0.12 -1.9 191,262 - BACOVA_02750 0.12 -0.9 191,262 - BACOVA_02750 0.12 +0.6 191,292 + BACOVA_02750 0.14 -0.5 191,299 - BACOVA_02750 0.15 -1.6 191,426 + BACOVA_02750 0.25 +1.2 191,426 + BACOVA_02750 0.25 -2.4 191,426 + BACOVA_02750 0.25 -0.1 191,429 - BACOVA_02750 0.26 -1.3 191,432 + BACOVA_02750 0.26 -0.8 191,433 - BACOVA_02750 0.26 -1.0 191,434 + BACOVA_02750 0.26 +0.2 191,434 + BACOVA_02750 0.26 -0.1 191,434 + BACOVA_02750 0.26 +1.0 191,435 - BACOVA_02750 0.26 -0.9 191,435 - BACOVA_02750 0.26 -1.2 191,435 - BACOVA_02750 0.26 -1.7 191,471 + BACOVA_02750 0.29 -0.1 191,471 + BACOVA_02750 0.29 -0.5 191,472 - BACOVA_02750 0.29 +2.8 191,500 + BACOVA_02750 0.32 -2.5 191,500 + BACOVA_02750 0.32 +0.1 191,501 - BACOVA_02750 0.32 -0.6 191,530 + BACOVA_02750 0.34 +0.8 191,530 + BACOVA_02750 0.34 -1.2 191,601 - BACOVA_02750 0.40 -0.4 191,696 + BACOVA_02750 0.48 -0.4 191,702 + BACOVA_02750 0.49 -0.8 191,702 + BACOVA_02750 0.49 +1.8 191,707 + BACOVA_02750 0.49 +0.4 191,707 + BACOVA_02750 0.49 +0.8 191,762 + BACOVA_02750 0.54 +0.7 191,768 + BACOVA_02750 0.54 -1.6 191,769 - BACOVA_02750 0.54 +0.2 191,791 + BACOVA_02750 0.56 +0.3 191,795 + BACOVA_02750 0.56 -1.4 191,961 + BACOVA_02750 0.70 +1.0 191,965 - BACOVA_02750 0.71 +0.8 191,986 + BACOVA_02750 0.72 -0.5 191,986 + BACOVA_02750 0.72 +1.2 191,986 + BACOVA_02750 0.72 +0.8 191,986 + BACOVA_02750 0.72 -0.6 191,993 + BACOVA_02750 0.73 -0.2 191,994 - BACOVA_02750 0.73 +1.8 192,045 + BACOVA_02750 0.77 -1.4 192,109 + BACOVA_02750 0.83 +1.3 192,120 - BACOVA_02750 0.84 +1.2 192,180 + BACOVA_02750 0.89 +0.3 192,244 + +0.4 192,244 + -0.8 192,244 + +1.4 192,245 - +0.4 192,245 - -0.6 192,254 + +0.1 192,255 - -1.2 192,255 - -0.8 192,255 - +1.4 192,299 + +1.3 192,300 - -1.2 192,300 - -0.1 192,315 - -1.5 192,331 + +2.2 192,401 - +0.4 192,420 + -1.5 192,445 + -1.0 192,446 - -0.6 192,446 - -1.2 192,472 - -1.8 192,497 + +1.4 192,499 + +0.8 192,506 + +0.5 192,506 + +1.8 192,507 - +0.1 192,507 - -0.6 192,528 + BACOVA_02751 0.10 +0.0 192,529 - BACOVA_02751 0.10 +0.2 192,529 - BACOVA_02751 0.10 -1.1 192,529 - BACOVA_02751 0.10 -0.5 192,563 - BACOVA_02751 0.12 -2.2 192,596 + BACOVA_02751 0.14 -0.8 192,596 + BACOVA_02751 0.14 -0.4 192,596 + BACOVA_02751 0.14 -0.7 192,597 - BACOVA_02751 0.14 -2.3 192,600 + BACOVA_02751 0.14 -0.5 192,600 + BACOVA_02751 0.14 -1.5 192,601 - BACOVA_02751 0.14 -1.2 192,635 - BACOVA_02751 0.16 +0.4 192,678 - BACOVA_02751 0.18 -1.2 192,694 + BACOVA_02751 0.19 -0.3 192,698 - BACOVA_02751 0.19 +0.6 192,698 - BACOVA_02751 0.19 +0.8 192,700 + BACOVA_02751 0.19 +0.9 192,700 + BACOVA_02751 0.19 -1.8 192,700 + BACOVA_02751 0.19 -0.7 192,702 + BACOVA_02751 0.19 -1.8 192,702 + BACOVA_02751 0.19 -0.8 192,757 + BACOVA_02751 0.22 -0.4 192,758 - BACOVA_02751 0.22 -1.6 192,788 + BACOVA_02751 0.24 -0.6 192,788 + BACOVA_02751 0.24 -1.1 192,789 - BACOVA_02751 0.24 -1.2 192,789 - BACOVA_02751 0.24 -0.7 192,789 - BACOVA_02751 0.24 +0.2 192,791 + BACOVA_02751 0.24 -0.5 192,799 + BACOVA_02751 0.24 -1.8 192,799 + BACOVA_02751 0.24 +1.2 192,800 - BACOVA_02751 0.24 -0.8 192,800 - BACOVA_02751 0.24 -0.1 192,804 - BACOVA_02751 0.24 -0.1 192,971 + BACOVA_02751 0.33 -0.0 192,971 + BACOVA_02751 0.33 -0.8 192,971 + BACOVA_02751 0.33 -0.4 193,046 - BACOVA_02751 0.37 -1.2 193,072 + BACOVA_02751 0.38 -1.5 193,072 + BACOVA_02751 0.38 +0.1 193,073 - BACOVA_02751 0.38 +0.2 193,075 + BACOVA_02751 0.38 +0.3 193,075 + BACOVA_02751 0.38 -1.1 193,101 + BACOVA_02751 0.40 +0.1 193,127 - BACOVA_02751 0.41 -1.2 193,145 + BACOVA_02751 0.42 -1.1 193,150 - BACOVA_02751 0.42 +0.8 193,195 + BACOVA_02751 0.45 +0.2 193,241 + BACOVA_02751 0.47 +0.1 193,255 - BACOVA_02751 0.48 +0.8
Or see this region's nucleotide sequence