Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02749

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02748 and BACOVA_02749 are separated by 90 nucleotidesBACOVA_02749 and BACOVA_02750 are separated by 12 nucleotides BACOVA_02748: BACOVA_02748 - hypothetical protein, at 188,931 to 190,328 _02748 BACOVA_02749: BACOVA_02749 - hypothetical protein, at 190,419 to 191,111 _02749 BACOVA_02750: BACOVA_02750 - hypothetical protein, at 191,124 to 192,314 _02750 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 189.437 kb on + strand, within BACOVA_02748at 189.437 kb on + strand, within BACOVA_02748at 189.454 kb on - strand, within BACOVA_02748at 189.459 kb on + strand, within BACOVA_02748at 189.463 kb on + strand, within BACOVA_02748at 189.463 kb on + strand, within BACOVA_02748at 189.466 kb on + strand, within BACOVA_02748at 189.466 kb on + strand, within BACOVA_02748at 189.467 kb on - strand, within BACOVA_02748at 189.494 kb on + strand, within BACOVA_02748at 189.497 kb on + strand, within BACOVA_02748at 189.498 kb on - strand, within BACOVA_02748at 189.581 kb on + strand, within BACOVA_02748at 189.582 kb on - strand, within BACOVA_02748at 189.624 kb on - strand, within BACOVA_02748at 189.624 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.672 kb on + strand, within BACOVA_02748at 189.674 kb on + strand, within BACOVA_02748at 189.674 kb on + strand, within BACOVA_02748at 189.801 kb on - strand, within BACOVA_02748at 189.801 kb on - strand, within BACOVA_02748at 189.801 kb on - strand, within BACOVA_02748at 189.893 kb on + strand, within BACOVA_02748at 189.893 kb on + strand, within BACOVA_02748at 189.893 kb on + strand, within BACOVA_02748at 189.894 kb on - strand, within BACOVA_02748at 189.894 kb on - strand, within BACOVA_02748at 189.894 kb on - strand, within BACOVA_02748at 189.894 kb on - strand, within BACOVA_02748at 189.895 kb on + strand, within BACOVA_02748at 189.895 kb on + strand, within BACOVA_02748at 189.931 kb on - strand, within BACOVA_02748at 189.935 kb on - strand, within BACOVA_02748at 189.946 kb on + strand, within BACOVA_02748at 189.990 kb on - strand, within BACOVA_02748at 189.992 kb on + strand, within BACOVA_02748at 190.009 kb on - strand, within BACOVA_02748at 190.038 kb on + strand, within BACOVA_02748at 190.039 kb on - strand, within BACOVA_02748at 190.071 kb on - strand, within BACOVA_02748at 190.073 kb on + strand, within BACOVA_02748at 190.073 kb on + strand, within BACOVA_02748at 190.073 kb on + strand, within BACOVA_02748at 190.074 kb on - strand, within BACOVA_02748at 190.074 kb on - strand, within BACOVA_02748at 190.075 kb on + strand, within BACOVA_02748at 190.097 kb on + strand, within BACOVA_02748at 190.098 kb on - strand, within BACOVA_02748at 190.132 kb on - strand, within BACOVA_02748at 190.132 kb on - strand, within BACOVA_02748at 190.142 kb on + strand, within BACOVA_02748at 190.142 kb on + strand, within BACOVA_02748at 190.144 kb on + strand, within BACOVA_02748at 190.175 kb on + strand, within BACOVA_02748at 190.212 kb on + strandat 190.233 kb on + strandat 190.238 kb on + strandat 190.239 kb on - strandat 190.250 kb on + strandat 190.250 kb on + strandat 190.250 kb on + strandat 190.254 kb on - strandat 190.290 kb on - strandat 190.290 kb on - strandat 190.311 kb on + strandat 190.315 kb on - strandat 190.330 kb on + strandat 190.404 kb on + strandat 190.404 kb on + strandat 190.405 kb on - strandat 190.405 kb on - strandat 190.420 kb on + strandat 190.421 kb on - strandat 190.423 kb on - strandat 190.423 kb on - strandat 190.458 kb on + strandat 190.459 kb on - strandat 190.459 kb on - strandat 190.481 kb on - strandat 190.488 kb on - strandat 190.488 kb on - strandat 190.492 kb on + strand, within BACOVA_02749at 190.493 kb on - strand, within BACOVA_02749at 190.493 kb on - strand, within BACOVA_02749at 190.517 kb on + strand, within BACOVA_02749at 190.518 kb on - strand, within BACOVA_02749at 190.553 kb on + strand, within BACOVA_02749at 190.560 kb on - strand, within BACOVA_02749at 190.592 kb on + strand, within BACOVA_02749at 190.625 kb on + strand, within BACOVA_02749at 190.628 kb on + strand, within BACOVA_02749at 190.629 kb on - strand, within BACOVA_02749at 190.659 kb on - strand, within BACOVA_02749at 190.659 kb on - strand, within BACOVA_02749at 190.660 kb on - strand, within BACOVA_02749at 190.670 kb on + strand, within BACOVA_02749at 190.708 kb on + strand, within BACOVA_02749at 190.708 kb on + strand, within BACOVA_02749at 190.720 kb on + strand, within BACOVA_02749at 190.742 kb on - strand, within BACOVA_02749at 190.763 kb on + strand, within BACOVA_02749at 190.784 kb on + strand, within BACOVA_02749at 190.791 kb on - strand, within BACOVA_02749at 190.791 kb on - strand, within BACOVA_02749at 190.808 kb on + strand, within BACOVA_02749at 190.833 kb on + strand, within BACOVA_02749at 190.848 kb on + strand, within BACOVA_02749at 190.869 kb on - strand, within BACOVA_02749at 190.905 kb on + strand, within BACOVA_02749at 190.983 kb on - strand, within BACOVA_02749at 191.002 kb on + strand, within BACOVA_02749at 191.028 kb on + strand, within BACOVA_02749at 191.028 kb on + strand, within BACOVA_02749at 191.029 kb on - strand, within BACOVA_02749at 191.030 kb on + strand, within BACOVA_02749at 191.030 kb on + strand, within BACOVA_02749at 191.031 kb on - strand, within BACOVA_02749at 191.031 kb on - strand, within BACOVA_02749at 191.031 kb on - strand, within BACOVA_02749at 191.038 kb on - strand, within BACOVA_02749at 191.081 kb on + strandat 191.130 kb on - strandat 191.174 kb on + strandat 191.175 kb on - strandat 191.194 kb on - strandat 191.194 kb on - strandat 191.261 kb on + strand, within BACOVA_02750at 191.261 kb on + strand, within BACOVA_02750at 191.262 kb on - strand, within BACOVA_02750at 191.262 kb on - strand, within BACOVA_02750at 191.292 kb on + strand, within BACOVA_02750at 191.299 kb on - strand, within BACOVA_02750at 191.426 kb on + strand, within BACOVA_02750at 191.426 kb on + strand, within BACOVA_02750at 191.426 kb on + strand, within BACOVA_02750at 191.429 kb on - strand, within BACOVA_02750at 191.432 kb on + strand, within BACOVA_02750at 191.433 kb on - strand, within BACOVA_02750at 191.434 kb on + strand, within BACOVA_02750at 191.434 kb on + strand, within BACOVA_02750at 191.434 kb on + strand, within BACOVA_02750at 191.435 kb on - strand, within BACOVA_02750at 191.435 kb on - strand, within BACOVA_02750at 191.435 kb on - strand, within BACOVA_02750at 191.471 kb on + strand, within BACOVA_02750at 191.471 kb on + strand, within BACOVA_02750at 191.472 kb on - strand, within BACOVA_02750at 191.500 kb on + strand, within BACOVA_02750at 191.500 kb on + strand, within BACOVA_02750at 191.501 kb on - strand, within BACOVA_02750at 191.530 kb on + strand, within BACOVA_02750at 191.530 kb on + strand, within BACOVA_02750at 191.601 kb on - strand, within BACOVA_02750at 191.696 kb on + strand, within BACOVA_02750at 191.702 kb on + strand, within BACOVA_02750at 191.702 kb on + strand, within BACOVA_02750at 191.707 kb on + strand, within BACOVA_02750at 191.707 kb on + strand, within BACOVA_02750at 191.762 kb on + strand, within BACOVA_02750at 191.768 kb on + strand, within BACOVA_02750at 191.769 kb on - strand, within BACOVA_02750at 191.791 kb on + strand, within BACOVA_02750at 191.795 kb on + strand, within BACOVA_02750at 191.961 kb on + strand, within BACOVA_02750at 191.965 kb on - strand, within BACOVA_02750at 191.986 kb on + strand, within BACOVA_02750at 191.986 kb on + strand, within BACOVA_02750at 191.986 kb on + strand, within BACOVA_02750at 191.986 kb on + strand, within BACOVA_02750at 191.993 kb on + strand, within BACOVA_02750at 191.994 kb on - strand, within BACOVA_02750at 192.045 kb on + strand, within BACOVA_02750at 192.109 kb on + strand, within BACOVA_02750

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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189,437 + BACOVA_02748 0.36 +0.5
189,437 + BACOVA_02748 0.36 -0.6
189,454 - BACOVA_02748 0.37 +1.0
189,459 + BACOVA_02748 0.38 +0.2
189,463 + BACOVA_02748 0.38 -0.6
189,463 + BACOVA_02748 0.38 -1.9
189,466 + BACOVA_02748 0.38 +1.9
189,466 + BACOVA_02748 0.38 +1.8
189,467 - BACOVA_02748 0.38 +0.4
189,494 + BACOVA_02748 0.40 +0.6
189,497 + BACOVA_02748 0.40 +1.2
189,498 - BACOVA_02748 0.41 -0.5
189,581 + BACOVA_02748 0.46 +1.2
189,582 - BACOVA_02748 0.47 -0.2
189,624 - BACOVA_02748 0.50 +0.6
189,624 - BACOVA_02748 0.50 +0.8
189,626 - BACOVA_02748 0.50 -1.4
189,626 - BACOVA_02748 0.50 -0.8
189,626 - BACOVA_02748 0.50 +1.8
189,626 - BACOVA_02748 0.50 +1.6
189,626 - BACOVA_02748 0.50 -0.2
189,672 + BACOVA_02748 0.53 -1.2
189,674 + BACOVA_02748 0.53 +6.8
189,674 + BACOVA_02748 0.53 -0.6
189,801 - BACOVA_02748 0.62 -0.1
189,801 - BACOVA_02748 0.62 -0.8
189,801 - BACOVA_02748 0.62 +0.6
189,893 + BACOVA_02748 0.69 -1.5
189,893 + BACOVA_02748 0.69 -0.1
189,893 + BACOVA_02748 0.69 -0.2
189,894 - BACOVA_02748 0.69 -0.3
189,894 - BACOVA_02748 0.69 +0.9
189,894 - BACOVA_02748 0.69 +1.8
189,894 - BACOVA_02748 0.69 -1.5
189,895 + BACOVA_02748 0.69 +0.7
189,895 + BACOVA_02748 0.69 -0.2
189,931 - BACOVA_02748 0.72 +0.3
189,935 - BACOVA_02748 0.72 +0.0
189,946 + BACOVA_02748 0.73 -1.2
189,990 - BACOVA_02748 0.76 -0.1
189,992 + BACOVA_02748 0.76 +0.8
190,009 - BACOVA_02748 0.77 -0.5
190,038 + BACOVA_02748 0.79 +1.8
190,039 - BACOVA_02748 0.79 +2.2
190,071 - BACOVA_02748 0.82 +0.4
190,073 + BACOVA_02748 0.82 -0.6
190,073 + BACOVA_02748 0.82 -2.2
190,073 + BACOVA_02748 0.82 -1.6
190,074 - BACOVA_02748 0.82 +1.2
190,074 - BACOVA_02748 0.82 +1.0
190,075 + BACOVA_02748 0.82 -1.6
190,097 + BACOVA_02748 0.83 -0.3
190,098 - BACOVA_02748 0.83 +0.4
190,132 - BACOVA_02748 0.86 -0.4
190,132 - BACOVA_02748 0.86 -0.4
190,142 + BACOVA_02748 0.87 +0.8
190,142 + BACOVA_02748 0.87 +1.4
190,144 + BACOVA_02748 0.87 -0.1
190,175 + BACOVA_02748 0.89 -1.2
190,212 + -1.2
190,233 + -0.1
190,238 + -1.1
190,239 - +1.2
190,250 + -0.2
190,250 + +0.1
190,250 + +0.1
190,254 - -0.5
190,290 - +1.9
190,290 - -0.9
190,311 + +0.5
190,315 - +2.3
190,330 + -0.2
190,404 + -0.3
190,404 + -0.5
190,405 - -1.6
190,405 - -2.9
190,420 + -0.6
190,421 - -1.4
190,423 - +1.2
190,423 - -0.1
190,458 + +0.8
190,459 - +0.2
190,459 - -1.7
190,481 - -2.2
190,488 - -0.9
190,488 - -2.5
190,492 + BACOVA_02749 0.11 +1.1
190,493 - BACOVA_02749 0.11 +0.8
190,493 - BACOVA_02749 0.11 -0.7
190,517 + BACOVA_02749 0.14 +1.8
190,518 - BACOVA_02749 0.14 -0.2
190,553 + BACOVA_02749 0.19 +0.5
190,560 - BACOVA_02749 0.20 -0.3
190,592 + BACOVA_02749 0.25 -0.9
190,625 + BACOVA_02749 0.30 +0.0
190,628 + BACOVA_02749 0.30 +1.8
190,629 - BACOVA_02749 0.30 -0.1
190,659 - BACOVA_02749 0.35 -0.1
190,659 - BACOVA_02749 0.35 -0.4
190,660 - BACOVA_02749 0.35 -1.1
190,670 + BACOVA_02749 0.36 -0.3
190,708 + BACOVA_02749 0.42 -0.7
190,708 + BACOVA_02749 0.42 -1.2
190,720 + BACOVA_02749 0.43 +0.5
190,742 - BACOVA_02749 0.47 -0.8
190,763 + BACOVA_02749 0.50 -1.6
190,784 + BACOVA_02749 0.53 +1.8
190,791 - BACOVA_02749 0.54 -0.4
190,791 - BACOVA_02749 0.54 +0.9
190,808 + BACOVA_02749 0.56 +1.2
190,833 + BACOVA_02749 0.60 -1.5
190,848 + BACOVA_02749 0.62 +1.3
190,869 - BACOVA_02749 0.65 -0.1
190,905 + BACOVA_02749 0.70 -0.6
190,983 - BACOVA_02749 0.81 +0.8
191,002 + BACOVA_02749 0.84 -1.5
191,028 + BACOVA_02749 0.88 -1.6
191,028 + BACOVA_02749 0.88 +4.5
191,029 - BACOVA_02749 0.88 +1.2
191,030 + BACOVA_02749 0.88 -0.6
191,030 + BACOVA_02749 0.88 +0.4
191,031 - BACOVA_02749 0.88 -0.2
191,031 - BACOVA_02749 0.88 +0.8
191,031 - BACOVA_02749 0.88 +0.8
191,038 - BACOVA_02749 0.89 -0.9
191,081 + +0.5
191,130 - -0.2
191,174 + +1.2
191,175 - -0.5
191,194 - +1.8
191,194 - -0.4
191,261 + BACOVA_02750 0.12 +1.2
191,261 + BACOVA_02750 0.12 -1.9
191,262 - BACOVA_02750 0.12 -0.9
191,262 - BACOVA_02750 0.12 +0.6
191,292 + BACOVA_02750 0.14 -0.5
191,299 - BACOVA_02750 0.15 -1.6
191,426 + BACOVA_02750 0.25 +1.2
191,426 + BACOVA_02750 0.25 -2.4
191,426 + BACOVA_02750 0.25 -0.1
191,429 - BACOVA_02750 0.26 -1.3
191,432 + BACOVA_02750 0.26 -0.8
191,433 - BACOVA_02750 0.26 -1.0
191,434 + BACOVA_02750 0.26 +0.2
191,434 + BACOVA_02750 0.26 -0.1
191,434 + BACOVA_02750 0.26 +1.0
191,435 - BACOVA_02750 0.26 -0.9
191,435 - BACOVA_02750 0.26 -1.2
191,435 - BACOVA_02750 0.26 -1.7
191,471 + BACOVA_02750 0.29 -0.1
191,471 + BACOVA_02750 0.29 -0.5
191,472 - BACOVA_02750 0.29 +2.8
191,500 + BACOVA_02750 0.32 -2.5
191,500 + BACOVA_02750 0.32 +0.1
191,501 - BACOVA_02750 0.32 -0.6
191,530 + BACOVA_02750 0.34 +0.8
191,530 + BACOVA_02750 0.34 -1.2
191,601 - BACOVA_02750 0.40 -0.4
191,696 + BACOVA_02750 0.48 -0.4
191,702 + BACOVA_02750 0.49 -0.8
191,702 + BACOVA_02750 0.49 +1.8
191,707 + BACOVA_02750 0.49 +0.4
191,707 + BACOVA_02750 0.49 +0.8
191,762 + BACOVA_02750 0.54 +0.7
191,768 + BACOVA_02750 0.54 -1.6
191,769 - BACOVA_02750 0.54 +0.2
191,791 + BACOVA_02750 0.56 +0.3
191,795 + BACOVA_02750 0.56 -1.4
191,961 + BACOVA_02750 0.70 +1.0
191,965 - BACOVA_02750 0.71 +0.8
191,986 + BACOVA_02750 0.72 -0.5
191,986 + BACOVA_02750 0.72 +1.2
191,986 + BACOVA_02750 0.72 +0.8
191,986 + BACOVA_02750 0.72 -0.6
191,993 + BACOVA_02750 0.73 -0.2
191,994 - BACOVA_02750 0.73 +1.8
192,045 + BACOVA_02750 0.77 -1.4
192,109 + BACOVA_02750 0.83 +1.3

Or see this region's nucleotide sequence