Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02747

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02745 and BACOVA_02746 are separated by 150 nucleotidesBACOVA_02746 and BACOVA_02747 are separated by 1 nucleotidesBACOVA_02747 and BACOVA_02748 are separated by 121 nucleotides BACOVA_02745: BACOVA_02745 - glycosyl hydrolase family 3 N-terminal domain protein, at 186,037 to 188,331 _02745 BACOVA_02746: BACOVA_02746 - hypothetical protein, at 188,482 to 188,673 _02746 BACOVA_02747: BACOVA_02747 - hypothetical protein, at 188,675 to 188,809 _02747 BACOVA_02748: BACOVA_02748 - hypothetical protein, at 188,931 to 190,328 _02748 Position (kb) 188 189Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 187.767 kb on + strand, within BACOVA_02745at 187.768 kb on - strand, within BACOVA_02745at 187.778 kb on + strand, within BACOVA_02745at 187.778 kb on + strand, within BACOVA_02745at 187.792 kb on + strand, within BACOVA_02745at 187.855 kb on + strand, within BACOVA_02745at 187.856 kb on - strand, within BACOVA_02745at 187.856 kb on - strand, within BACOVA_02745at 187.888 kb on - strand, within BACOVA_02745at 187.891 kb on + strand, within BACOVA_02745at 187.892 kb on - strand, within BACOVA_02745at 187.936 kb on + strand, within BACOVA_02745at 187.944 kb on - strand, within BACOVA_02745at 187.991 kb on - strand, within BACOVA_02745at 188.073 kb on - strand, within BACOVA_02745at 188.073 kb on - strand, within BACOVA_02745at 188.208 kb on + strandat 188.217 kb on - strandat 188.217 kb on - strandat 188.217 kb on - strandat 188.317 kb on - strandat 188.319 kb on + strandat 188.320 kb on - strandat 188.320 kb on - strandat 188.321 kb on + strandat 188.321 kb on + strandat 188.330 kb on - strandat 188.348 kb on - strandat 188.348 kb on - strandat 188.395 kb on + strandat 188.395 kb on + strandat 188.395 kb on + strandat 188.396 kb on - strandat 188.396 kb on - strandat 188.396 kb on - strandat 188.396 kb on - strandat 188.398 kb on - strandat 188.441 kb on + strandat 188.476 kb on + strandat 188.554 kb on - strand, within BACOVA_02746at 188.554 kb on - strand, within BACOVA_02746at 188.583 kb on - strand, within BACOVA_02746at 188.584 kb on - strand, within BACOVA_02746at 188.620 kb on + strand, within BACOVA_02746at 188.632 kb on - strand, within BACOVA_02746at 188.632 kb on - strand, within BACOVA_02746at 188.692 kb on + strand, within BACOVA_02747at 188.696 kb on + strand, within BACOVA_02747at 188.717 kb on + strand, within BACOVA_02747at 188.717 kb on + strand, within BACOVA_02747at 188.727 kb on + strand, within BACOVA_02747at 188.734 kb on - strand, within BACOVA_02747at 188.781 kb on - strand, within BACOVA_02747at 188.794 kb on - strand, within BACOVA_02747at 188.857 kb on - strandat 188.857 kb on - strandat 188.896 kb on + strandat 188.896 kb on + strandat 188.897 kb on - strandat 188.903 kb on + strandat 188.903 kb on + strandat 188.904 kb on - strandat 188.904 kb on - strandat 188.906 kb on - strandat 188.994 kb on + strandat 188.994 kb on + strandat 188.999 kb on - strandat 189.005 kb on + strandat 189.008 kb on - strandat 189.013 kb on + strandat 189.014 kb on - strandat 189.030 kb on + strandat 189.047 kb on + strandat 189.048 kb on - strandat 189.054 kb on + strandat 189.055 kb on - strandat 189.057 kb on - strandat 189.057 kb on - strandat 189.082 kb on - strand, within BACOVA_02748at 189.163 kb on + strand, within BACOVA_02748at 189.164 kb on - strand, within BACOVA_02748at 189.179 kb on + strand, within BACOVA_02748at 189.180 kb on - strand, within BACOVA_02748at 189.197 kb on + strand, within BACOVA_02748at 189.236 kb on + strand, within BACOVA_02748at 189.239 kb on - strand, within BACOVA_02748at 189.245 kb on + strand, within BACOVA_02748at 189.246 kb on - strand, within BACOVA_02748at 189.248 kb on - strand, within BACOVA_02748at 189.251 kb on + strand, within BACOVA_02748at 189.251 kb on + strand, within BACOVA_02748at 189.252 kb on - strand, within BACOVA_02748at 189.252 kb on - strand, within BACOVA_02748at 189.277 kb on + strand, within BACOVA_02748at 189.278 kb on - strand, within BACOVA_02748at 189.278 kb on - strand, within BACOVA_02748at 189.373 kb on + strand, within BACOVA_02748at 189.391 kb on - strand, within BACOVA_02748at 189.396 kb on + strand, within BACOVA_02748at 189.396 kb on + strand, within BACOVA_02748at 189.437 kb on + strand, within BACOVA_02748at 189.437 kb on + strand, within BACOVA_02748at 189.454 kb on - strand, within BACOVA_02748at 189.459 kb on + strand, within BACOVA_02748at 189.463 kb on + strand, within BACOVA_02748at 189.463 kb on + strand, within BACOVA_02748at 189.466 kb on + strand, within BACOVA_02748at 189.466 kb on + strand, within BACOVA_02748at 189.467 kb on - strand, within BACOVA_02748at 189.494 kb on + strand, within BACOVA_02748at 189.497 kb on + strand, within BACOVA_02748at 189.498 kb on - strand, within BACOVA_02748at 189.581 kb on + strand, within BACOVA_02748at 189.582 kb on - strand, within BACOVA_02748at 189.624 kb on - strand, within BACOVA_02748at 189.624 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.626 kb on - strand, within BACOVA_02748at 189.672 kb on + strand, within BACOVA_02748at 189.674 kb on + strand, within BACOVA_02748at 189.674 kb on + strand, within BACOVA_02748at 189.801 kb on - strand, within BACOVA_02748at 189.801 kb on - strand, within BACOVA_02748at 189.801 kb on - strand, within BACOVA_02748

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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187,767 + BACOVA_02745 0.75 -0.3
187,768 - BACOVA_02745 0.75 +0.1
187,778 + BACOVA_02745 0.76 -0.1
187,778 + BACOVA_02745 0.76 -0.4
187,792 + BACOVA_02745 0.76 +0.6
187,855 + BACOVA_02745 0.79 +0.1
187,856 - BACOVA_02745 0.79 -0.4
187,856 - BACOVA_02745 0.79 +6.1
187,888 - BACOVA_02745 0.81 -0.5
187,891 + BACOVA_02745 0.81 -1.1
187,892 - BACOVA_02745 0.81 +1.5
187,936 + BACOVA_02745 0.83 +2.0
187,944 - BACOVA_02745 0.83 -0.6
187,991 - BACOVA_02745 0.85 -0.9
188,073 - BACOVA_02745 0.89 -0.3
188,073 - BACOVA_02745 0.89 -1.5
188,208 + +1.6
188,217 - -0.1
188,217 - -1.3
188,217 - -2.3
188,317 - +0.2
188,319 + +0.8
188,320 - -0.3
188,320 - -1.2
188,321 + +1.8
188,321 + -0.3
188,330 - -0.9
188,348 - -2.2
188,348 - -0.4
188,395 + -0.9
188,395 + +2.2
188,395 + +0.6
188,396 - +0.4
188,396 - +1.5
188,396 - -0.3
188,396 - -2.1
188,398 - +1.8
188,441 + -0.1
188,476 + +1.2
188,554 - BACOVA_02746 0.38 -1.2
188,554 - BACOVA_02746 0.38 +0.4
188,583 - BACOVA_02746 0.53 -1.4
188,584 - BACOVA_02746 0.53 -0.6
188,620 + BACOVA_02746 0.72 -0.1
188,632 - BACOVA_02746 0.78 +1.2
188,632 - BACOVA_02746 0.78 +0.3
188,692 + BACOVA_02747 0.13 -0.2
188,696 + BACOVA_02747 0.16 -0.3
188,717 + BACOVA_02747 0.31 -0.4
188,717 + BACOVA_02747 0.31 -0.6
188,727 + BACOVA_02747 0.39 +0.4
188,734 - BACOVA_02747 0.44 +0.8
188,781 - BACOVA_02747 0.79 -2.7
188,794 - BACOVA_02747 0.88 -0.9
188,857 - -1.3
188,857 - +1.2
188,896 + -0.8
188,896 + +0.2
188,897 - -0.8
188,903 + +0.3
188,903 + +0.4
188,904 - +1.2
188,904 - +2.8
188,906 - -0.1
188,994 + -0.5
188,994 + -0.7
188,999 - -0.4
189,005 + -1.9
189,008 - +1.4
189,013 + +1.8
189,014 - +0.8
189,030 + +0.7
189,047 + +0.4
189,048 - -0.2
189,054 + -1.0
189,055 - -0.9
189,057 - +3.7
189,057 - +0.4
189,082 - BACOVA_02748 0.11 +0.5
189,163 + BACOVA_02748 0.17 +2.2
189,164 - BACOVA_02748 0.17 +0.8
189,179 + BACOVA_02748 0.18 -0.7
189,180 - BACOVA_02748 0.18 +0.2
189,197 + BACOVA_02748 0.19 +1.4
189,236 + BACOVA_02748 0.22 -0.5
189,239 - BACOVA_02748 0.22 -1.3
189,245 + BACOVA_02748 0.22 -1.0
189,246 - BACOVA_02748 0.23 +0.4
189,248 - BACOVA_02748 0.23 -1.0
189,251 + BACOVA_02748 0.23 +3.5
189,251 + BACOVA_02748 0.23 +0.1
189,252 - BACOVA_02748 0.23 +0.8
189,252 - BACOVA_02748 0.23 -0.8
189,277 + BACOVA_02748 0.25 -0.3
189,278 - BACOVA_02748 0.25 +0.6
189,278 - BACOVA_02748 0.25 +0.8
189,373 + BACOVA_02748 0.32 +0.0
189,391 - BACOVA_02748 0.33 -0.1
189,396 + BACOVA_02748 0.33 -0.1
189,396 + BACOVA_02748 0.33 +0.4
189,437 + BACOVA_02748 0.36 +0.5
189,437 + BACOVA_02748 0.36 -0.6
189,454 - BACOVA_02748 0.37 +1.0
189,459 + BACOVA_02748 0.38 +0.2
189,463 + BACOVA_02748 0.38 -0.6
189,463 + BACOVA_02748 0.38 -1.9
189,466 + BACOVA_02748 0.38 +1.9
189,466 + BACOVA_02748 0.38 +1.8
189,467 - BACOVA_02748 0.38 +0.4
189,494 + BACOVA_02748 0.40 +0.6
189,497 + BACOVA_02748 0.40 +1.2
189,498 - BACOVA_02748 0.41 -0.5
189,581 + BACOVA_02748 0.46 +1.2
189,582 - BACOVA_02748 0.47 -0.2
189,624 - BACOVA_02748 0.50 +0.6
189,624 - BACOVA_02748 0.50 +0.8
189,626 - BACOVA_02748 0.50 -1.4
189,626 - BACOVA_02748 0.50 -0.8
189,626 - BACOVA_02748 0.50 +1.8
189,626 - BACOVA_02748 0.50 +1.6
189,626 - BACOVA_02748 0.50 -0.2
189,672 + BACOVA_02748 0.53 -1.2
189,674 + BACOVA_02748 0.53 +6.8
189,674 + BACOVA_02748 0.53 -0.6
189,801 - BACOVA_02748 0.62 -0.1
189,801 - BACOVA_02748 0.62 -0.8
189,801 - BACOVA_02748 0.62 +0.6

Or see this region's nucleotide sequence