Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02424 and BACOVA_02425 are separated by 28 nucleotides BACOVA_02425 and BACOVA_02426 overlap by 4 nucleotides BACOVA_02426 and BACOVA_02427 are separated by 179 nucleotides BACOVA_02427 and BACOVA_02428 are separated by 133 nucleotides
BACOVA_02424: BACOVA_02424 - HRDC domain protein, at 188,809 to 191,406
_02424
BACOVA_02425: BACOVA_02425 - hypothetical protein, at 191,435 to 192,055
_02425
BACOVA_02426: BACOVA_02426 - hypothetical protein, at 192,052 to 192,309
_02426
BACOVA_02427: BACOVA_02427 - hypothetical protein, at 192,489 to 192,599
_02427
BACOVA_02428: BACOVA_02428 - putative dTDP-4-dehydrorhamnose reductase, at 192,733 to 193,644
_02428
Position (kb) 191
192
193 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10 at 190.448 kb on - strand, within BACOVA_02424 at 190.458 kb on + strand, within BACOVA_02424 at 190.459 kb on - strand, within BACOVA_02424 at 190.462 kb on - strand, within BACOVA_02424 at 190.462 kb on - strand, within BACOVA_02424 at 190.474 kb on - strand, within BACOVA_02424 at 190.474 kb on - strand, within BACOVA_02424 at 190.477 kb on - strand, within BACOVA_02424 at 190.477 kb on - strand, within BACOVA_02424 at 190.614 kb on - strand, within BACOVA_02424 at 190.638 kb on + strand, within BACOVA_02424 at 190.639 kb on - strand, within BACOVA_02424 at 190.819 kb on + strand, within BACOVA_02424 at 190.896 kb on - strand, within BACOVA_02424 at 190.963 kb on - strand, within BACOVA_02424 at 191.002 kb on - strand, within BACOVA_02424 at 191.006 kb on + strand, within BACOVA_02424 at 191.006 kb on + strand, within BACOVA_02424 at 191.031 kb on + strand, within BACOVA_02424 at 191.136 kb on + strand, within BACOVA_02424 at 191.231 kb on - strand at 191.281 kb on - strand at 191.317 kb on + strand at 191.318 kb on - strand at 191.318 kb on - strand at 191.418 kb on - strand at 191.420 kb on + strand at 191.553 kb on - strand, within BACOVA_02425 at 191.748 kb on + strand, within BACOVA_02425 at 191.909 kb on - strand, within BACOVA_02425 at 191.931 kb on - strand, within BACOVA_02425 at 191.936 kb on + strand, within BACOVA_02425 at 191.942 kb on + strand, within BACOVA_02425 at 191.950 kb on - strand, within BACOVA_02425 at 191.950 kb on - strand, within BACOVA_02425 at 192.011 kb on - strand at 192.030 kb on - strand at 192.032 kb on + strand at 192.033 kb on - strand at 192.079 kb on + strand, within BACOVA_02426 at 192.264 kb on + strand, within BACOVA_02426 at 192.280 kb on + strand, within BACOVA_02426 at 192.280 kb on + strand, within BACOVA_02426 at 192.281 kb on - strand, within BACOVA_02426 at 192.336 kb on + strand at 192.337 kb on - strand at 192.337 kb on - strand at 192.338 kb on + strand at 192.434 kb on + strand at 192.572 kb on + strand, within BACOVA_02427 at 192.577 kb on - strand, within BACOVA_02427 at 192.636 kb on - strand at 192.719 kb on - strand at 192.810 kb on + strand at 192.811 kb on - strand at 192.991 kb on + strand, within BACOVA_02428 at 193.019 kb on + strand, within BACOVA_02428 at 193.019 kb on + strand, within BACOVA_02428 at 193.054 kb on + strand, within BACOVA_02428
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 190,448 - BACOVA_02424 0.63 +0.4 190,458 + BACOVA_02424 0.63 -1.3 190,459 - BACOVA_02424 0.64 +0.2 190,462 - BACOVA_02424 0.64 +2.4 190,462 - BACOVA_02424 0.64 +1.4 190,474 - BACOVA_02424 0.64 +0.2 190,474 - BACOVA_02424 0.64 -0.1 190,477 - BACOVA_02424 0.64 +0.4 190,477 - BACOVA_02424 0.64 +0.3 190,614 - BACOVA_02424 0.69 -0.9 190,638 + BACOVA_02424 0.70 +0.7 190,639 - BACOVA_02424 0.70 +0.1 190,819 + BACOVA_02424 0.77 +7.6 190,896 - BACOVA_02424 0.80 +0.6 190,963 - BACOVA_02424 0.83 -0.6 191,002 - BACOVA_02424 0.84 -0.4 191,006 + BACOVA_02424 0.85 +0.8 191,006 + BACOVA_02424 0.85 -1.3 191,031 + BACOVA_02424 0.86 -0.4 191,136 + BACOVA_02424 0.90 +0.1 191,231 - -0.8 191,281 - +0.5 191,317 + -0.6 191,318 - +2.4 191,318 - +0.8 191,418 - +0.4 191,420 + -0.6 191,553 - BACOVA_02425 0.19 +1.4 191,748 + BACOVA_02425 0.50 +2.4 191,909 - BACOVA_02425 0.76 +2.4 191,931 - BACOVA_02425 0.80 +1.4 191,936 + BACOVA_02425 0.81 +2.4 191,942 + BACOVA_02425 0.82 +2.4 191,950 - BACOVA_02425 0.83 +0.1 191,950 - BACOVA_02425 0.83 +1.4 192,011 - -0.2 192,030 - +0.4 192,032 + +0.1 192,033 - +0.4 192,079 + BACOVA_02426 0.10 -0.2 192,264 + BACOVA_02426 0.82 +0.4 192,280 + BACOVA_02426 0.88 -0.2 192,280 + BACOVA_02426 0.88 +2.4 192,281 - BACOVA_02426 0.89 +1.4 192,336 + -0.2 192,337 - +0.6 192,337 - -0.5 192,338 + +0.8 192,434 + +0.8 192,572 + BACOVA_02427 0.75 +0.1 192,577 - BACOVA_02427 0.79 -0.2 192,636 - -0.1 192,719 - +0.2 192,810 + -0.2 192,811 - +10.2 192,991 + BACOVA_02428 0.28 -0.8 193,019 + BACOVA_02428 0.31 -0.2 193,019 + BACOVA_02428 0.31 -0.6 193,054 + BACOVA_02428 0.35 +1.8
Or see this region's nucleotide sequence