Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02292

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02290 and BACOVA_02291 are separated by 16 nucleotidesBACOVA_02291 and BACOVA_02292 overlap by 4 nucleotidesBACOVA_02292 and BACOVA_02293 are separated by 471 nucleotides BACOVA_02290: BACOVA_02290 - hypothetical protein, at 60,347 to 61,903 _02290 BACOVA_02291: BACOVA_02291 - hypothetical protein, at 61,920 to 62,789 _02291 BACOVA_02292: BACOVA_02292 - hypothetical protein, at 62,786 to 63,763 _02292 BACOVA_02293: BACOVA_02293 - hypothetical protein, at 64,235 to 64,834 _02293 Position (kb) 62 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 61.805 kb on - strandat 61.823 kb on - strandat 61.968 kb on - strandat 61.968 kb on - strandat 61.973 kb on - strandat 62.013 kb on + strand, within BACOVA_02291at 62.014 kb on - strand, within BACOVA_02291at 62.014 kb on - strand, within BACOVA_02291at 62.039 kb on + strand, within BACOVA_02291at 62.039 kb on + strand, within BACOVA_02291at 62.039 kb on + strand, within BACOVA_02291at 62.039 kb on + strand, within BACOVA_02291at 62.053 kb on + strand, within BACOVA_02291at 62.071 kb on - strand, within BACOVA_02291at 62.096 kb on + strand, within BACOVA_02291at 62.097 kb on - strand, within BACOVA_02291at 62.097 kb on - strand, within BACOVA_02291at 62.099 kb on - strand, within BACOVA_02291at 62.099 kb on - strand, within BACOVA_02291at 62.099 kb on - strand, within BACOVA_02291at 62.100 kb on + strand, within BACOVA_02291at 62.100 kb on + strand, within BACOVA_02291at 62.101 kb on - strand, within BACOVA_02291at 62.101 kb on - strand, within BACOVA_02291at 62.117 kb on + strand, within BACOVA_02291at 62.117 kb on + strand, within BACOVA_02291at 62.118 kb on - strand, within BACOVA_02291at 62.121 kb on + strand, within BACOVA_02291at 62.122 kb on - strand, within BACOVA_02291at 62.190 kb on + strand, within BACOVA_02291at 62.193 kb on + strand, within BACOVA_02291at 62.209 kb on + strand, within BACOVA_02291at 62.232 kb on + strand, within BACOVA_02291at 62.258 kb on + strand, within BACOVA_02291at 62.259 kb on - strand, within BACOVA_02291at 62.263 kb on - strand, within BACOVA_02291at 62.295 kb on - strand, within BACOVA_02291at 62.336 kb on + strand, within BACOVA_02291at 62.351 kb on - strand, within BACOVA_02291at 62.355 kb on + strand, within BACOVA_02291at 62.356 kb on - strand, within BACOVA_02291at 62.356 kb on - strand, within BACOVA_02291at 62.378 kb on + strand, within BACOVA_02291at 62.383 kb on + strand, within BACOVA_02291at 62.384 kb on - strand, within BACOVA_02291at 62.512 kb on - strand, within BACOVA_02291at 62.525 kb on + strand, within BACOVA_02291at 62.541 kb on - strand, within BACOVA_02291at 62.550 kb on - strand, within BACOVA_02291at 62.551 kb on + strand, within BACOVA_02291at 62.551 kb on + strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.552 kb on - strand, within BACOVA_02291at 62.562 kb on - strand, within BACOVA_02291at 62.562 kb on - strand, within BACOVA_02291at 62.590 kb on - strand, within BACOVA_02291at 62.650 kb on - strand, within BACOVA_02291at 62.723 kb on + strandat 62.729 kb on + strandat 62.729 kb on + strandat 62.735 kb on + strandat 62.736 kb on - strandat 62.745 kb on - strandat 62.765 kb on + strandat 62.765 kb on + strandat 62.765 kb on + strandat 62.766 kb on - strandat 62.766 kb on - strandat 62.766 kb on - strandat 62.823 kb on + strandat 62.823 kb on + strandat 62.849 kb on - strandat 62.852 kb on - strandat 62.864 kb on + strandat 62.865 kb on - strandat 62.899 kb on + strand, within BACOVA_02292at 62.902 kb on - strand, within BACOVA_02292at 62.953 kb on - strand, within BACOVA_02292at 62.993 kb on + strand, within BACOVA_02292at 63.000 kb on - strand, within BACOVA_02292at 63.000 kb on - strand, within BACOVA_02292at 63.039 kb on - strand, within BACOVA_02292at 63.039 kb on - strand, within BACOVA_02292at 63.109 kb on - strand, within BACOVA_02292at 63.116 kb on + strand, within BACOVA_02292at 63.116 kb on + strand, within BACOVA_02292at 63.201 kb on + strand, within BACOVA_02292at 63.201 kb on + strand, within BACOVA_02292at 63.201 kb on + strand, within BACOVA_02292at 63.202 kb on - strand, within BACOVA_02292at 63.202 kb on - strand, within BACOVA_02292at 63.202 kb on - strand, within BACOVA_02292at 63.207 kb on + strand, within BACOVA_02292at 63.207 kb on + strand, within BACOVA_02292at 63.207 kb on + strand, within BACOVA_02292at 63.316 kb on + strand, within BACOVA_02292at 63.322 kb on - strand, within BACOVA_02292at 63.324 kb on - strand, within BACOVA_02292at 63.324 kb on - strand, within BACOVA_02292at 63.388 kb on + strand, within BACOVA_02292at 63.443 kb on + strand, within BACOVA_02292at 63.443 kb on + strand, within BACOVA_02292at 63.486 kb on + strand, within BACOVA_02292at 63.486 kb on + strand, within BACOVA_02292at 63.517 kb on - strand, within BACOVA_02292at 63.573 kb on - strand, within BACOVA_02292at 63.574 kb on + strand, within BACOVA_02292at 63.575 kb on - strand, within BACOVA_02292at 63.575 kb on - strand, within BACOVA_02292at 63.597 kb on + strand, within BACOVA_02292at 63.597 kb on + strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.598 kb on - strand, within BACOVA_02292at 63.666 kb on - strandat 63.682 kb on - strandat 63.702 kb on + strandat 63.707 kb on - strandat 63.707 kb on - strandat 63.707 kb on - strandat 63.718 kb on + strandat 63.743 kb on - strandat 63.748 kb on - strandat 63.748 kb on - strandat 63.748 kb on - strandat 63.748 kb on - strandat 63.812 kb on - strandat 63.879 kb on + strandat 63.894 kb on - strandat 63.937 kb on + strandat 63.938 kb on - strandat 63.938 kb on - strandat 63.941 kb on + strandat 63.965 kb on + strandat 63.980 kb on + strandat 63.980 kb on + strandat 64.022 kb on - strandat 64.143 kb on - strandat 64.159 kb on - strandat 64.231 kb on + strandat 64.235 kb on - strandat 64.235 kb on - strandat 64.266 kb on + strandat 64.266 kb on + strandat 64.288 kb on + strandat 64.309 kb on + strand, within BACOVA_02293at 64.321 kb on - strand, within BACOVA_02293at 64.355 kb on - strand, within BACOVA_02293at 64.378 kb on - strand, within BACOVA_02293at 64.378 kb on - strand, within BACOVA_02293at 64.381 kb on + strand, within BACOVA_02293at 64.382 kb on - strand, within BACOVA_02293at 64.383 kb on + strand, within BACOVA_02293at 64.450 kb on + strand, within BACOVA_02293at 64.490 kb on + strand, within BACOVA_02293at 64.490 kb on + strand, within BACOVA_02293at 64.491 kb on - strand, within BACOVA_02293at 64.528 kb on + strand, within BACOVA_02293at 64.528 kb on + strand, within BACOVA_02293at 64.529 kb on - strand, within BACOVA_02293at 64.608 kb on - strand, within BACOVA_02293at 64.612 kb on + strand, within BACOVA_02293at 64.648 kb on + strand, within BACOVA_02293at 64.648 kb on + strand, within BACOVA_02293at 64.651 kb on + strand, within BACOVA_02293at 64.651 kb on + strand, within BACOVA_02293at 64.734 kb on + strand, within BACOVA_02293

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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61,805 - -0.9
61,823 - -0.4
61,968 - -1.1
61,968 - -0.3
61,973 - +0.4
62,013 + BACOVA_02291 0.11 -0.6
62,014 - BACOVA_02291 0.11 -0.1
62,014 - BACOVA_02291 0.11 +0.6
62,039 + BACOVA_02291 0.14 -0.6
62,039 + BACOVA_02291 0.14 -2.2
62,039 + BACOVA_02291 0.14 +0.4
62,039 + BACOVA_02291 0.14 +0.2
62,053 + BACOVA_02291 0.15 -0.7
62,071 - BACOVA_02291 0.17 +0.9
62,096 + BACOVA_02291 0.20 -1.1
62,097 - BACOVA_02291 0.20 +0.1
62,097 - BACOVA_02291 0.20 -1.1
62,099 - BACOVA_02291 0.21 -0.4
62,099 - BACOVA_02291 0.21 +0.9
62,099 - BACOVA_02291 0.21 -0.4
62,100 + BACOVA_02291 0.21 +0.8
62,100 + BACOVA_02291 0.21 +1.1
62,101 - BACOVA_02291 0.21 -0.6
62,101 - BACOVA_02291 0.21 +1.4
62,117 + BACOVA_02291 0.23 -1.5
62,117 + BACOVA_02291 0.23 +0.4
62,118 - BACOVA_02291 0.23 -1.6
62,121 + BACOVA_02291 0.23 +0.9
62,122 - BACOVA_02291 0.23 +2.0
62,190 + BACOVA_02291 0.31 -0.3
62,193 + BACOVA_02291 0.31 -1.4
62,209 + BACOVA_02291 0.33 +0.1
62,232 + BACOVA_02291 0.36 +0.9
62,258 + BACOVA_02291 0.39 +0.2
62,259 - BACOVA_02291 0.39 -0.6
62,263 - BACOVA_02291 0.39 -0.9
62,295 - BACOVA_02291 0.43 -0.6
62,336 + BACOVA_02291 0.48 -1.3
62,351 - BACOVA_02291 0.50 +0.2
62,355 + BACOVA_02291 0.50 +1.1
62,356 - BACOVA_02291 0.50 +0.4
62,356 - BACOVA_02291 0.50 +0.1
62,378 + BACOVA_02291 0.53 +0.3
62,383 + BACOVA_02291 0.53 -0.6
62,384 - BACOVA_02291 0.53 -1.7
62,512 - BACOVA_02291 0.68 -0.6
62,525 + BACOVA_02291 0.70 -0.6
62,541 - BACOVA_02291 0.71 -1.3
62,550 - BACOVA_02291 0.72 -0.7
62,551 + BACOVA_02291 0.73 +0.1
62,551 + BACOVA_02291 0.73 +0.4
62,552 - BACOVA_02291 0.73 +0.3
62,552 - BACOVA_02291 0.73 +0.0
62,552 - BACOVA_02291 0.73 +0.2
62,552 - BACOVA_02291 0.73 -0.1
62,552 - BACOVA_02291 0.73 -1.1
62,552 - BACOVA_02291 0.73 -0.4
62,562 - BACOVA_02291 0.74 +2.0
62,562 - BACOVA_02291 0.74 -1.1
62,590 - BACOVA_02291 0.77 +2.4
62,650 - BACOVA_02291 0.84 -0.5
62,723 + +0.9
62,729 + -1.2
62,729 + -1.1
62,735 + -0.1
62,736 - -0.7
62,745 - -1.4
62,765 + +0.1
62,765 + +0.4
62,765 + -0.4
62,766 - -0.1
62,766 - -0.6
62,766 - -0.1
62,823 + +1.1
62,823 + -0.4
62,849 - -2.8
62,852 - +0.9
62,864 + +1.4
62,865 - -0.6
62,899 + BACOVA_02292 0.12 +0.3
62,902 - BACOVA_02292 0.12 +0.1
62,953 - BACOVA_02292 0.17 +0.4
62,993 + BACOVA_02292 0.21 -0.7
63,000 - BACOVA_02292 0.22 -1.2
63,000 - BACOVA_02292 0.22 +1.4
63,039 - BACOVA_02292 0.26 -1.6
63,039 - BACOVA_02292 0.26 -1.9
63,109 - BACOVA_02292 0.33 -1.4
63,116 + BACOVA_02292 0.34 -0.5
63,116 + BACOVA_02292 0.34 -0.1
63,201 + BACOVA_02292 0.42 -1.0
63,201 + BACOVA_02292 0.42 -2.6
63,201 + BACOVA_02292 0.42 -0.0
63,202 - BACOVA_02292 0.43 +3.1
63,202 - BACOVA_02292 0.43 -0.9
63,202 - BACOVA_02292 0.43 +0.1
63,207 + BACOVA_02292 0.43 +3.0
63,207 + BACOVA_02292 0.43 -1.0
63,207 + BACOVA_02292 0.43 -0.1
63,316 + BACOVA_02292 0.54 +0.6
63,322 - BACOVA_02292 0.55 +1.4
63,324 - BACOVA_02292 0.55 +0.4
63,324 - BACOVA_02292 0.55 -0.1
63,388 + BACOVA_02292 0.62 +1.1
63,443 + BACOVA_02292 0.67 +0.4
63,443 + BACOVA_02292 0.67 -2.6
63,486 + BACOVA_02292 0.72 -0.0
63,486 + BACOVA_02292 0.72 -1.3
63,517 - BACOVA_02292 0.75 -1.0
63,573 - BACOVA_02292 0.80 +0.1
63,574 + BACOVA_02292 0.81 -1.8
63,575 - BACOVA_02292 0.81 -0.5
63,575 - BACOVA_02292 0.81 +0.4
63,597 + BACOVA_02292 0.83 -0.4
63,597 + BACOVA_02292 0.83 +2.4
63,598 - BACOVA_02292 0.83 +0.4
63,598 - BACOVA_02292 0.83 +0.1
63,598 - BACOVA_02292 0.83 -1.8
63,598 - BACOVA_02292 0.83 +0.8
63,598 - BACOVA_02292 0.83 -0.5
63,598 - BACOVA_02292 0.83 +0.3
63,666 - +0.9
63,682 - +0.6
63,702 + -0.0
63,707 - -0.0
63,707 - +0.4
63,707 - -0.4
63,718 + -1.6
63,743 - -0.6
63,748 - -1.0
63,748 - -0.3
63,748 - +0.4
63,748 - +1.4
63,812 - +0.4
63,879 + -1.1
63,894 - +0.6
63,937 + +0.1
63,938 - -0.6
63,938 - -0.9
63,941 + -0.6
63,965 + +0.4
63,980 + -1.8
63,980 + -0.9
64,022 - +0.1
64,143 - -1.0
64,159 - -0.5
64,231 + -1.1
64,235 - +0.1
64,235 - -0.6
64,266 + -0.5
64,266 + +0.6
64,288 + -1.0
64,309 + BACOVA_02293 0.12 -0.5
64,321 - BACOVA_02293 0.14 -1.5
64,355 - BACOVA_02293 0.20 -0.7
64,378 - BACOVA_02293 0.24 -0.6
64,378 - BACOVA_02293 0.24 +0.9
64,381 + BACOVA_02293 0.24 +3.7
64,382 - BACOVA_02293 0.24 -1.7
64,383 + BACOVA_02293 0.25 -0.4
64,450 + BACOVA_02293 0.36 +1.4
64,490 + BACOVA_02293 0.42 -1.9
64,490 + BACOVA_02293 0.42 +0.9
64,491 - BACOVA_02293 0.43 +1.1
64,528 + BACOVA_02293 0.49 -1.6
64,528 + BACOVA_02293 0.49 -0.4
64,529 - BACOVA_02293 0.49 +1.9
64,608 - BACOVA_02293 0.62 -1.6
64,612 + BACOVA_02293 0.63 -0.6
64,648 + BACOVA_02293 0.69 -0.2
64,648 + BACOVA_02293 0.69 -0.4
64,651 + BACOVA_02293 0.69 +0.9
64,651 + BACOVA_02293 0.69 +0.4
64,734 + BACOVA_02293 0.83 +0.4

Or see this region's nucleotide sequence