Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02002

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02001 and BACOVA_02002 are separated by 45 nucleotidesBACOVA_02002 and BACOVA_02003 are separated by 313 nucleotides BACOVA_02001: BACOVA_02001 - dihydrouridine synthase (Dus), at 240,345 to 241,289 _02001 BACOVA_02002: BACOVA_02002 - hypothetical protein, at 241,335 to 242,579 _02002 BACOVA_02003: BACOVA_02003 - hypothetical protein, at 242,893 to 243,288 _02003 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 240.341 kb on + strandat 240.344 kb on - strandat 240.363 kb on - strandat 240.379 kb on + strandat 240.379 kb on + strandat 240.388 kb on - strandat 240.435 kb on - strandat 240.436 kb on + strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.440 kb on + strand, within BACOVA_02001at 240.444 kb on + strand, within BACOVA_02001at 240.444 kb on + strand, within BACOVA_02001at 240.445 kb on - strand, within BACOVA_02001at 240.445 kb on - strand, within BACOVA_02001at 240.449 kb on + strand, within BACOVA_02001at 240.450 kb on - strand, within BACOVA_02001at 240.583 kb on + strand, within BACOVA_02001at 240.584 kb on - strand, within BACOVA_02001at 240.606 kb on + strand, within BACOVA_02001at 240.608 kb on + strand, within BACOVA_02001at 240.608 kb on + strand, within BACOVA_02001at 240.609 kb on - strand, within BACOVA_02001at 240.649 kb on + strand, within BACOVA_02001at 240.651 kb on - strand, within BACOVA_02001at 240.653 kb on + strand, within BACOVA_02001at 240.654 kb on - strand, within BACOVA_02001at 240.700 kb on + strand, within BACOVA_02001at 240.706 kb on + strand, within BACOVA_02001at 240.707 kb on - strand, within BACOVA_02001at 240.710 kb on + strand, within BACOVA_02001at 240.720 kb on - strand, within BACOVA_02001at 240.727 kb on - strand, within BACOVA_02001at 240.804 kb on - strand, within BACOVA_02001at 240.804 kb on - strand, within BACOVA_02001at 240.815 kb on - strand, within BACOVA_02001at 240.927 kb on + strand, within BACOVA_02001at 240.927 kb on + strand, within BACOVA_02001at 240.928 kb on - strand, within BACOVA_02001at 240.938 kb on + strand, within BACOVA_02001at 240.938 kb on + strand, within BACOVA_02001at 240.944 kb on + strand, within BACOVA_02001at 240.945 kb on - strand, within BACOVA_02001at 240.949 kb on + strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.957 kb on - strand, within BACOVA_02001at 241.004 kb on - strand, within BACOVA_02001at 241.046 kb on + strand, within BACOVA_02001at 241.097 kb on + strand, within BACOVA_02001at 241.098 kb on - strand, within BACOVA_02001at 241.186 kb on - strand, within BACOVA_02001at 241.254 kb on - strandat 241.353 kb on + strandat 241.353 kb on + strandat 241.361 kb on - strandat 241.385 kb on - strandat 241.453 kb on - strandat 241.457 kb on + strandat 241.457 kb on + strandat 241.457 kb on + strandat 241.458 kb on - strandat 241.497 kb on + strand, within BACOVA_02002at 241.499 kb on + strand, within BACOVA_02002at 241.500 kb on - strand, within BACOVA_02002at 241.569 kb on + strand, within BACOVA_02002at 241.571 kb on + strand, within BACOVA_02002at 241.578 kb on + strand, within BACOVA_02002at 241.643 kb on - strand, within BACOVA_02002at 241.702 kb on - strand, within BACOVA_02002at 241.732 kb on + strand, within BACOVA_02002at 241.733 kb on - strand, within BACOVA_02002at 241.735 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.931 kb on + strand, within BACOVA_02002at 241.936 kb on - strand, within BACOVA_02002at 242.048 kb on + strand, within BACOVA_02002at 242.050 kb on + strand, within BACOVA_02002at 242.054 kb on - strand, within BACOVA_02002at 242.054 kb on - strand, within BACOVA_02002at 242.057 kb on + strand, within BACOVA_02002at 242.064 kb on - strand, within BACOVA_02002at 242.067 kb on + strand, within BACOVA_02002at 242.067 kb on + strand, within BACOVA_02002at 242.068 kb on - strand, within BACOVA_02002at 242.119 kb on - strand, within BACOVA_02002at 242.155 kb on + strand, within BACOVA_02002at 242.239 kb on - strand, within BACOVA_02002at 242.239 kb on - strand, within BACOVA_02002at 242.241 kb on - strand, within BACOVA_02002at 242.311 kb on + strand, within BACOVA_02002at 242.311 kb on + strand, within BACOVA_02002at 242.316 kb on + strand, within BACOVA_02002at 242.347 kb on + strand, within BACOVA_02002at 242.347 kb on + strand, within BACOVA_02002at 242.347 kb on + strand, within BACOVA_02002at 242.347 kb on + strand, within BACOVA_02002at 242.348 kb on - strand, within BACOVA_02002at 242.349 kb on + strand, within BACOVA_02002at 242.349 kb on + strand, within BACOVA_02002at 242.350 kb on - strand, within BACOVA_02002at 242.363 kb on - strand, within BACOVA_02002at 242.434 kb on - strand, within BACOVA_02002at 242.468 kb on + strandat 242.468 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.474 kb on - strandat 242.488 kb on - strandat 242.488 kb on - strandat 242.537 kb on - strandat 242.537 kb on - strandat 242.540 kb on + strandat 242.541 kb on - strandat 242.549 kb on + strandat 242.550 kb on - strandat 242.571 kb on - strandat 242.571 kb on - strandat 242.588 kb on + strandat 242.605 kb on + strandat 242.605 kb on + strandat 242.606 kb on - strandat 242.607 kb on + strandat 242.674 kb on + strandat 242.674 kb on + strandat 242.675 kb on - strandat 242.721 kb on - strandat 242.725 kb on + strandat 242.777 kb on + strandat 242.856 kb on - strandat 242.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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240,341 + -0.7
240,344 - -1.2
240,363 - +0.2
240,379 + +0.4
240,379 + -0.6
240,388 - -2.3
240,435 - +2.7
240,436 + +0.2
240,437 - -0.1
240,437 - +0.3
240,437 - -1.7
240,437 - -0.1
240,440 + BACOVA_02001 0.10 -1.5
240,444 + BACOVA_02001 0.10 +0.7
240,444 + BACOVA_02001 0.10 +0.4
240,445 - BACOVA_02001 0.11 -0.5
240,445 - BACOVA_02001 0.11 -1.1
240,449 + BACOVA_02001 0.11 +3.1
240,450 - BACOVA_02001 0.11 -0.4
240,583 + BACOVA_02001 0.25 -0.6
240,584 - BACOVA_02001 0.25 -1.5
240,606 + BACOVA_02001 0.28 -2.2
240,608 + BACOVA_02001 0.28 +0.1
240,608 + BACOVA_02001 0.28 -0.4
240,609 - BACOVA_02001 0.28 +0.6
240,649 + BACOVA_02001 0.32 -2.3
240,651 - BACOVA_02001 0.32 +0.6
240,653 + BACOVA_02001 0.33 -1.3
240,654 - BACOVA_02001 0.33 -1.0
240,700 + BACOVA_02001 0.38 +0.7
240,706 + BACOVA_02001 0.38 -0.9
240,707 - BACOVA_02001 0.38 -1.3
240,710 + BACOVA_02001 0.39 +2.2
240,720 - BACOVA_02001 0.40 +0.3
240,727 - BACOVA_02001 0.40 -0.2
240,804 - BACOVA_02001 0.49 +0.4
240,804 - BACOVA_02001 0.49 +1.5
240,815 - BACOVA_02001 0.50 +1.4
240,927 + BACOVA_02001 0.62 -0.1
240,927 + BACOVA_02001 0.62 -0.6
240,928 - BACOVA_02001 0.62 -1.8
240,938 + BACOVA_02001 0.63 -0.2
240,938 + BACOVA_02001 0.63 +0.7
240,944 + BACOVA_02001 0.63 -0.3
240,945 - BACOVA_02001 0.63 +1.7
240,949 + BACOVA_02001 0.64 -0.7
240,950 - BACOVA_02001 0.64 -0.4
240,950 - BACOVA_02001 0.64 -0.6
240,950 - BACOVA_02001 0.64 -0.8
240,950 - BACOVA_02001 0.64 -0.3
240,957 - BACOVA_02001 0.65 +0.9
241,004 - BACOVA_02001 0.70 +0.9
241,046 + BACOVA_02001 0.74 +2.0
241,097 + BACOVA_02001 0.80 -0.4
241,098 - BACOVA_02001 0.80 -0.2
241,186 - BACOVA_02001 0.89 +1.2
241,254 - +0.4
241,353 + +0.4
241,353 + +1.4
241,361 - +0.7
241,385 - -1.7
241,453 - +1.7
241,457 + -1.0
241,457 + +1.2
241,457 + -1.7
241,458 - +0.2
241,497 + BACOVA_02002 0.13 +1.2
241,499 + BACOVA_02002 0.13 +0.2
241,500 - BACOVA_02002 0.13 -0.1
241,569 + BACOVA_02002 0.19 +1.2
241,571 + BACOVA_02002 0.19 -0.8
241,578 + BACOVA_02002 0.20 -0.1
241,643 - BACOVA_02002 0.25 +1.2
241,702 - BACOVA_02002 0.29 -1.3
241,732 + BACOVA_02002 0.32 -2.7
241,733 - BACOVA_02002 0.32 -1.4
241,735 + BACOVA_02002 0.32 -2.2
241,901 + BACOVA_02002 0.45 -2.0
241,901 + BACOVA_02002 0.45 -0.7
241,901 + BACOVA_02002 0.45 -0.3
241,901 + BACOVA_02002 0.45 -2.4
241,931 + BACOVA_02002 0.48 -1.0
241,936 - BACOVA_02002 0.48 -1.6
242,048 + BACOVA_02002 0.57 -1.9
242,050 + BACOVA_02002 0.57 -2.0
242,054 - BACOVA_02002 0.58 +0.4
242,054 - BACOVA_02002 0.58 -1.2
242,057 + BACOVA_02002 0.58 -2.2
242,064 - BACOVA_02002 0.59 -1.8
242,067 + BACOVA_02002 0.59 -0.6
242,067 + BACOVA_02002 0.59 -1.5
242,068 - BACOVA_02002 0.59 -2.7
242,119 - BACOVA_02002 0.63 -0.8
242,155 + BACOVA_02002 0.66 -0.2
242,239 - BACOVA_02002 0.73 -1.2
242,239 - BACOVA_02002 0.73 -1.6
242,241 - BACOVA_02002 0.73 +1.7
242,311 + BACOVA_02002 0.78 +0.7
242,311 + BACOVA_02002 0.78 -1.2
242,316 + BACOVA_02002 0.79 -1.5
242,347 + BACOVA_02002 0.81 -0.1
242,347 + BACOVA_02002 0.81 -1.3
242,347 + BACOVA_02002 0.81 -2.4
242,347 + BACOVA_02002 0.81 -0.3
242,348 - BACOVA_02002 0.81 -1.2
242,349 + BACOVA_02002 0.81 +0.3
242,349 + BACOVA_02002 0.81 -0.7
242,350 - BACOVA_02002 0.82 -0.3
242,363 - BACOVA_02002 0.83 +1.2
242,434 - BACOVA_02002 0.88 -1.5
242,468 + -1.0
242,468 + -2.4
242,473 + -0.7
242,473 + -2.0
242,473 + +0.7
242,473 + -1.4
242,473 + -0.9
242,473 + -0.1
242,474 - -0.7
242,488 - -0.1
242,488 - -1.1
242,537 - -0.2
242,537 - -2.9
242,540 + -2.0
242,541 - -2.1
242,549 + -2.5
242,550 - -0.3
242,571 - -2.2
242,571 - +0.2
242,588 + -0.7
242,605 + -0.5
242,605 + -0.4
242,606 - +0.3
242,607 + -0.6
242,674 + +0.6
242,674 + +0.9
242,675 - +0.1
242,721 - -1.2
242,725 + -0.1
242,777 + +0.3
242,856 - +0.2
242,863 - -0.4

Or see this region's nucleotide sequence