Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01999

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01998 and BACOVA_01999 are separated by 27 nucleotidesBACOVA_01999 and BACOVA_02000 are separated by 30 nucleotides BACOVA_01998: BACOVA_01998 - TonB-linked outer membrane protein, SusC/RagA family, at 234,111 to 237,269 _01998 BACOVA_01999: BACOVA_01999 - SusD family protein, at 237,297 to 239,069 _01999 BACOVA_02000: BACOVA_02000 - hypothetical protein, at 239,100 to 240,200 _02000 Position (kb) 237 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 236.309 kb on + strand, within BACOVA_01998at 236.357 kb on - strand, within BACOVA_01998at 236.366 kb on - strand, within BACOVA_01998at 236.432 kb on + strand, within BACOVA_01998at 236.433 kb on - strand, within BACOVA_01998at 236.433 kb on - strand, within BACOVA_01998at 236.435 kb on + strand, within BACOVA_01998at 236.442 kb on - strand, within BACOVA_01998at 236.529 kb on - strand, within BACOVA_01998at 236.538 kb on + strand, within BACOVA_01998at 236.544 kb on + strand, within BACOVA_01998at 236.545 kb on - strand, within BACOVA_01998at 236.545 kb on - strand, within BACOVA_01998at 236.545 kb on - strand, within BACOVA_01998at 236.580 kb on + strand, within BACOVA_01998at 236.580 kb on + strand, within BACOVA_01998at 236.592 kb on + strand, within BACOVA_01998at 236.601 kb on - strand, within BACOVA_01998at 236.604 kb on + strand, within BACOVA_01998at 236.610 kb on + strand, within BACOVA_01998at 236.636 kb on + strand, within BACOVA_01998at 236.636 kb on + strand, within BACOVA_01998at 236.637 kb on - strand, within BACOVA_01998at 236.637 kb on - strand, within BACOVA_01998at 236.637 kb on - strand, within BACOVA_01998at 236.640 kb on + strand, within BACOVA_01998at 236.640 kb on + strand, within BACOVA_01998at 236.640 kb on + strand, within BACOVA_01998at 236.640 kb on + strand, within BACOVA_01998at 236.641 kb on - strand, within BACOVA_01998at 236.641 kb on - strand, within BACOVA_01998at 236.641 kb on - strand, within BACOVA_01998at 236.641 kb on - strand, within BACOVA_01998at 236.641 kb on - strand, within BACOVA_01998at 236.641 kb on - strand, within BACOVA_01998at 236.751 kb on - strand, within BACOVA_01998at 236.753 kb on + strand, within BACOVA_01998at 236.754 kb on - strand, within BACOVA_01998at 236.754 kb on - strand, within BACOVA_01998at 236.780 kb on + strand, within BACOVA_01998at 236.860 kb on + strand, within BACOVA_01998at 236.920 kb on - strand, within BACOVA_01998at 236.963 kb on + strandat 236.993 kb on + strandat 237.014 kb on + strandat 237.014 kb on + strandat 237.059 kb on - strandat 237.064 kb on - strandat 237.065 kb on + strandat 237.065 kb on + strandat 237.065 kb on + strandat 237.066 kb on - strandat 237.101 kb on - strandat 237.115 kb on + strandat 237.136 kb on + strandat 237.136 kb on + strandat 237.136 kb on + strandat 237.146 kb on + strandat 237.147 kb on - strandat 237.147 kb on - strandat 237.147 kb on - strandat 237.175 kb on + strandat 237.176 kb on - strandat 237.179 kb on + strandat 237.234 kb on + strandat 237.234 kb on + strandat 237.235 kb on - strandat 237.235 kb on - strandat 237.235 kb on - strandat 237.259 kb on + strandat 237.267 kb on + strandat 237.290 kb on + strandat 237.290 kb on + strandat 237.291 kb on - strandat 237.294 kb on + strandat 237.294 kb on + strandat 237.295 kb on - strandat 237.296 kb on + strandat 237.297 kb on - strandat 237.444 kb on + strandat 237.488 kb on - strand, within BACOVA_01999at 237.519 kb on + strand, within BACOVA_01999at 237.520 kb on - strand, within BACOVA_01999at 237.520 kb on - strand, within BACOVA_01999at 237.520 kb on - strand, within BACOVA_01999at 237.563 kb on + strand, within BACOVA_01999at 237.613 kb on + strand, within BACOVA_01999at 237.615 kb on + strand, within BACOVA_01999at 237.615 kb on + strand, within BACOVA_01999at 237.696 kb on + strand, within BACOVA_01999at 237.737 kb on + strand, within BACOVA_01999at 237.763 kb on + strand, within BACOVA_01999at 237.764 kb on - strand, within BACOVA_01999at 237.783 kb on - strand, within BACOVA_01999at 237.795 kb on + strand, within BACOVA_01999at 237.795 kb on + strand, within BACOVA_01999at 237.834 kb on + strand, within BACOVA_01999at 237.842 kb on + strand, within BACOVA_01999at 237.842 kb on + strand, within BACOVA_01999at 237.858 kb on + strand, within BACOVA_01999at 237.858 kb on + strand, within BACOVA_01999at 237.859 kb on - strand, within BACOVA_01999at 237.952 kb on + strand, within BACOVA_01999at 237.952 kb on + strand, within BACOVA_01999at 237.953 kb on - strand, within BACOVA_01999at 237.954 kb on + strand, within BACOVA_01999at 237.954 kb on + strand, within BACOVA_01999at 237.954 kb on + strand, within BACOVA_01999at 237.955 kb on - strand, within BACOVA_01999at 237.955 kb on - strand, within BACOVA_01999at 237.955 kb on - strand, within BACOVA_01999at 237.956 kb on + strand, within BACOVA_01999at 237.956 kb on + strand, within BACOVA_01999at 237.956 kb on + strand, within BACOVA_01999at 237.956 kb on + strand, within BACOVA_01999at 237.957 kb on - strand, within BACOVA_01999at 237.978 kb on - strand, within BACOVA_01999at 238.017 kb on - strand, within BACOVA_01999at 238.036 kb on - strand, within BACOVA_01999at 238.067 kb on - strand, within BACOVA_01999at 238.091 kb on - strand, within BACOVA_01999at 238.102 kb on - strand, within BACOVA_01999at 238.102 kb on - strand, within BACOVA_01999at 238.133 kb on + strand, within BACOVA_01999at 238.133 kb on + strand, within BACOVA_01999at 238.137 kb on + strand, within BACOVA_01999at 238.138 kb on - strand, within BACOVA_01999at 238.139 kb on + strand, within BACOVA_01999at 238.193 kb on - strand, within BACOVA_01999at 238.222 kb on + strand, within BACOVA_01999at 238.223 kb on - strand, within BACOVA_01999at 238.236 kb on - strand, within BACOVA_01999at 238.321 kb on - strand, within BACOVA_01999at 238.436 kb on + strand, within BACOVA_01999at 238.437 kb on - strand, within BACOVA_01999at 238.515 kb on + strand, within BACOVA_01999at 238.543 kb on - strand, within BACOVA_01999at 238.587 kb on - strand, within BACOVA_01999at 238.587 kb on - strand, within BACOVA_01999at 238.614 kb on + strand, within BACOVA_01999at 238.643 kb on + strand, within BACOVA_01999at 238.644 kb on - strand, within BACOVA_01999at 238.740 kb on + strand, within BACOVA_01999at 238.740 kb on + strand, within BACOVA_01999at 238.748 kb on + strand, within BACOVA_01999at 238.863 kb on - strand, within BACOVA_01999at 238.863 kb on - strand, within BACOVA_01999at 238.897 kb on - strandat 238.897 kb on - strandat 238.966 kb on + strandat 238.966 kb on + strandat 238.966 kb on + strandat 238.967 kb on - strandat 238.967 kb on - strandat 238.968 kb on + strandat 238.970 kb on + strandat 238.970 kb on + strandat 238.971 kb on - strandat 238.971 kb on - strandat 238.975 kb on - strandat 238.975 kb on - strandat 238.982 kb on + strandat 239.001 kb on + strandat 239.042 kb on + strandat 239.079 kb on + strandat 239.108 kb on - strandat 239.115 kb on - strandat 239.129 kb on + strandat 239.146 kb on + strandat 239.321 kb on - strand, within BACOVA_02000at 239.332 kb on - strand, within BACOVA_02000at 239.398 kb on + strand, within BACOVA_02000at 239.399 kb on - strand, within BACOVA_02000at 239.401 kb on + strand, within BACOVA_02000at 239.401 kb on + strand, within BACOVA_02000at 239.402 kb on - strand, within BACOVA_02000at 239.402 kb on - strand, within BACOVA_02000at 239.403 kb on + strand, within BACOVA_02000at 239.404 kb on - strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.410 kb on - strand, within BACOVA_02000at 239.414 kb on + strand, within BACOVA_02000at 239.438 kb on + strand, within BACOVA_02000at 239.439 kb on - strand, within BACOVA_02000at 239.439 kb on - strand, within BACOVA_02000at 239.446 kb on + strand, within BACOVA_02000at 239.447 kb on - strand, within BACOVA_02000at 239.449 kb on + strand, within BACOVA_02000at 239.449 kb on + strand, within BACOVA_02000at 239.514 kb on - strand, within BACOVA_02000at 239.570 kb on + strand, within BACOVA_02000at 239.593 kb on + strand, within BACOVA_02000at 239.596 kb on + strand, within BACOVA_02000at 239.601 kb on + strand, within BACOVA_02000at 239.649 kb on - strand, within BACOVA_02000at 239.651 kb on + strand, within BACOVA_02000at 239.669 kb on - strand, within BACOVA_02000at 239.671 kb on + strand, within BACOVA_02000at 239.672 kb on - strand, within BACOVA_02000at 239.675 kb on + strand, within BACOVA_02000at 239.675 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.679 kb on - strand, within BACOVA_02000at 239.729 kb on + strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.770 kb on - strand, within BACOVA_02000at 239.777 kb on - strand, within BACOVA_02000at 239.816 kb on + strand, within BACOVA_02000at 239.834 kb on + strand, within BACOVA_02000at 239.872 kb on - strand, within BACOVA_02000at 239.879 kb on + strand, within BACOVA_02000at 239.879 kb on + strand, within BACOVA_02000at 239.889 kb on + strand, within BACOVA_02000at 239.889 kb on + strand, within BACOVA_02000at 239.900 kb on - strand, within BACOVA_02000at 239.906 kb on + strand, within BACOVA_02000at 239.974 kb on - strand, within BACOVA_02000at 239.975 kb on + strand, within BACOVA_02000at 239.976 kb on - strand, within BACOVA_02000at 239.987 kb on + strand, within BACOVA_02000at 239.987 kb on + strand, within BACOVA_02000at 239.996 kb on + strand, within BACOVA_02000at 240.046 kb on + strand, within BACOVA_02000at 240.046 kb on + strand, within BACOVA_02000at 240.047 kb on - strand, within BACOVA_02000at 240.059 kb on + strand, within BACOVA_02000

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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236,309 + BACOVA_01998 0.70 -0.4
236,357 - BACOVA_01998 0.71 +0.7
236,366 - BACOVA_01998 0.71 -1.4
236,432 + BACOVA_01998 0.73 -0.5
236,433 - BACOVA_01998 0.74 +2.2
236,433 - BACOVA_01998 0.74 +0.9
236,435 + BACOVA_01998 0.74 -0.8
236,442 - BACOVA_01998 0.74 -0.3
236,529 - BACOVA_01998 0.77 -1.5
236,538 + BACOVA_01998 0.77 -0.1
236,544 + BACOVA_01998 0.77 -0.6
236,545 - BACOVA_01998 0.77 -1.7
236,545 - BACOVA_01998 0.77 -1.6
236,545 - BACOVA_01998 0.77 -0.3
236,580 + BACOVA_01998 0.78 -0.3
236,580 + BACOVA_01998 0.78 +0.2
236,592 + BACOVA_01998 0.79 -0.3
236,601 - BACOVA_01998 0.79 -0.3
236,604 + BACOVA_01998 0.79 +0.1
236,610 + BACOVA_01998 0.79 +0.2
236,636 + BACOVA_01998 0.80 -0.3
236,636 + BACOVA_01998 0.80 -2.1
236,637 - BACOVA_01998 0.80 -1.8
236,637 - BACOVA_01998 0.80 +0.4
236,637 - BACOVA_01998 0.80 +0.2
236,640 + BACOVA_01998 0.80 -0.7
236,640 + BACOVA_01998 0.80 -2.3
236,640 + BACOVA_01998 0.80 +0.3
236,640 + BACOVA_01998 0.80 -1.9
236,641 - BACOVA_01998 0.80 -0.3
236,641 - BACOVA_01998 0.80 -2.2
236,641 - BACOVA_01998 0.80 +0.6
236,641 - BACOVA_01998 0.80 -1.2
236,641 - BACOVA_01998 0.80 -0.5
236,641 - BACOVA_01998 0.80 -1.1
236,751 - BACOVA_01998 0.84 -1.4
236,753 + BACOVA_01998 0.84 -0.1
236,754 - BACOVA_01998 0.84 +0.6
236,754 - BACOVA_01998 0.84 -0.4
236,780 + BACOVA_01998 0.84 -0.4
236,860 + BACOVA_01998 0.87 +0.6
236,920 - BACOVA_01998 0.89 -0.5
236,963 + -1.5
236,993 + -1.5
237,014 + +1.3
237,014 + -0.3
237,059 - -3.0
237,064 - -0.5
237,065 + +0.4
237,065 + +0.2
237,065 + -1.0
237,066 - -0.8
237,101 - -2.4
237,115 + +0.7
237,136 + +0.7
237,136 + +1.2
237,136 + -0.6
237,146 + -0.6
237,147 - +0.3
237,147 - -1.7
237,147 - -1.0
237,175 + -1.0
237,176 - +0.0
237,179 + -1.1
237,234 + +0.7
237,234 + +1.7
237,235 - +1.2
237,235 - -1.0
237,235 - -0.9
237,259 + +0.2
237,267 + -0.2
237,290 + -0.3
237,290 + -2.1
237,291 - +0.0
237,294 + +0.8
237,294 + +1.7
237,295 - -0.7
237,296 + -0.3
237,297 - -0.1
237,444 + +0.5
237,488 - BACOVA_01999 0.11 -1.8
237,519 + BACOVA_01999 0.13 -0.8
237,520 - BACOVA_01999 0.13 -0.5
237,520 - BACOVA_01999 0.13 -0.1
237,520 - BACOVA_01999 0.13 -0.2
237,563 + BACOVA_01999 0.15 -2.1
237,613 + BACOVA_01999 0.18 +0.6
237,615 + BACOVA_01999 0.18 -1.9
237,615 + BACOVA_01999 0.18 +0.4
237,696 + BACOVA_01999 0.23 +0.3
237,737 + BACOVA_01999 0.25 -1.1
237,763 + BACOVA_01999 0.26 -0.4
237,764 - BACOVA_01999 0.26 -1.7
237,783 - BACOVA_01999 0.27 -0.1
237,795 + BACOVA_01999 0.28 -1.0
237,795 + BACOVA_01999 0.28 -0.1
237,834 + BACOVA_01999 0.30 +1.2
237,842 + BACOVA_01999 0.31 -0.3
237,842 + BACOVA_01999 0.31 -0.3
237,858 + BACOVA_01999 0.32 +0.2
237,858 + BACOVA_01999 0.32 +0.7
237,859 - BACOVA_01999 0.32 +0.4
237,952 + BACOVA_01999 0.37 +0.7
237,952 + BACOVA_01999 0.37 -1.7
237,953 - BACOVA_01999 0.37 +0.9
237,954 + BACOVA_01999 0.37 -0.2
237,954 + BACOVA_01999 0.37 +1.2
237,954 + BACOVA_01999 0.37 +0.2
237,955 - BACOVA_01999 0.37 -0.4
237,955 - BACOVA_01999 0.37 +0.7
237,955 - BACOVA_01999 0.37 -0.7
237,956 + BACOVA_01999 0.37 -0.6
237,956 + BACOVA_01999 0.37 -2.0
237,956 + BACOVA_01999 0.37 -0.6
237,956 + BACOVA_01999 0.37 -0.0
237,957 - BACOVA_01999 0.37 +0.9
237,978 - BACOVA_01999 0.38 +0.2
238,017 - BACOVA_01999 0.41 -0.8
238,036 - BACOVA_01999 0.42 -0.6
238,067 - BACOVA_01999 0.43 -0.5
238,091 - BACOVA_01999 0.45 -1.4
238,102 - BACOVA_01999 0.45 -0.6
238,102 - BACOVA_01999 0.45 -0.3
238,133 + BACOVA_01999 0.47 +0.4
238,133 + BACOVA_01999 0.47 -0.3
238,137 + BACOVA_01999 0.47 -0.3
238,138 - BACOVA_01999 0.47 +0.0
238,139 + BACOVA_01999 0.47 -0.3
238,193 - BACOVA_01999 0.51 +0.4
238,222 + BACOVA_01999 0.52 +1.4
238,223 - BACOVA_01999 0.52 +0.2
238,236 - BACOVA_01999 0.53 -1.3
238,321 - BACOVA_01999 0.58 +0.1
238,436 + BACOVA_01999 0.64 -0.3
238,437 - BACOVA_01999 0.64 +1.9
238,515 + BACOVA_01999 0.69 -0.1
238,543 - BACOVA_01999 0.70 +1.4
238,587 - BACOVA_01999 0.73 +2.2
238,587 - BACOVA_01999 0.73 -0.8
238,614 + BACOVA_01999 0.74 +0.4
238,643 + BACOVA_01999 0.76 +0.5
238,644 - BACOVA_01999 0.76 -0.6
238,740 + BACOVA_01999 0.81 -0.7
238,740 + BACOVA_01999 0.81 +2.2
238,748 + BACOVA_01999 0.82 +0.2
238,863 - BACOVA_01999 0.88 -0.8
238,863 - BACOVA_01999 0.88 -1.0
238,897 - -0.0
238,897 - -1.0
238,966 + -0.6
238,966 + +0.7
238,966 + +2.7
238,967 - +1.3
238,967 - -0.7
238,968 + +1.7
238,970 + -0.8
238,970 + -0.3
238,971 - -0.5
238,971 - -1.0
238,975 - -0.7
238,975 - +1.4
238,982 + -1.7
239,001 + -0.1
239,042 + -1.2
239,079 + +0.7
239,108 - -0.7
239,115 - -0.7
239,129 + -1.0
239,146 + -0.4
239,321 - BACOVA_02000 0.20 -0.2
239,332 - BACOVA_02000 0.21 -1.5
239,398 + BACOVA_02000 0.27 -2.8
239,399 - BACOVA_02000 0.27 +0.4
239,401 + BACOVA_02000 0.27 -0.1
239,401 + BACOVA_02000 0.27 -0.4
239,402 - BACOVA_02000 0.27 -0.7
239,402 - BACOVA_02000 0.27 -0.8
239,403 + BACOVA_02000 0.28 -0.6
239,404 - BACOVA_02000 0.28 -0.7
239,409 + BACOVA_02000 0.28 -0.4
239,409 + BACOVA_02000 0.28 -1.1
239,409 + BACOVA_02000 0.28 -0.1
239,409 + BACOVA_02000 0.28 -0.7
239,410 - BACOVA_02000 0.28 +0.1
239,414 + BACOVA_02000 0.29 +1.2
239,438 + BACOVA_02000 0.31 +0.4
239,439 - BACOVA_02000 0.31 -2.2
239,439 - BACOVA_02000 0.31 -0.7
239,446 + BACOVA_02000 0.31 -0.5
239,447 - BACOVA_02000 0.32 +1.0
239,449 + BACOVA_02000 0.32 +1.2
239,449 + BACOVA_02000 0.32 +1.3
239,514 - BACOVA_02000 0.38 -0.5
239,570 + BACOVA_02000 0.43 -1.5
239,593 + BACOVA_02000 0.45 +2.7
239,596 + BACOVA_02000 0.45 +1.7
239,601 + BACOVA_02000 0.46 -0.7
239,649 - BACOVA_02000 0.50 -0.4
239,651 + BACOVA_02000 0.50 -0.7
239,669 - BACOVA_02000 0.52 +1.3
239,671 + BACOVA_02000 0.52 -0.7
239,672 - BACOVA_02000 0.52 -0.7
239,675 + BACOVA_02000 0.52 -0.6
239,675 + BACOVA_02000 0.52 +1.2
239,678 + BACOVA_02000 0.52 -0.6
239,678 + BACOVA_02000 0.52 +0.3
239,678 + BACOVA_02000 0.52 +0.4
239,679 - BACOVA_02000 0.53 +1.7
239,729 + BACOVA_02000 0.57 -0.4
239,730 - BACOVA_02000 0.57 -0.8
239,730 - BACOVA_02000 0.57 -0.4
239,730 - BACOVA_02000 0.57 +0.2
239,770 - BACOVA_02000 0.61 -0.3
239,777 - BACOVA_02000 0.61 -0.6
239,816 + BACOVA_02000 0.65 -0.3
239,834 + BACOVA_02000 0.67 +0.7
239,872 - BACOVA_02000 0.70 -1.8
239,879 + BACOVA_02000 0.71 -0.3
239,879 + BACOVA_02000 0.71 -1.3
239,889 + BACOVA_02000 0.72 +1.7
239,889 + BACOVA_02000 0.72 +0.4
239,900 - BACOVA_02000 0.73 +0.7
239,906 + BACOVA_02000 0.73 -0.8
239,974 - BACOVA_02000 0.79 -0.2
239,975 + BACOVA_02000 0.79 -0.6
239,976 - BACOVA_02000 0.80 +1.6
239,987 + BACOVA_02000 0.81 -1.5
239,987 + BACOVA_02000 0.81 -1.0
239,996 + BACOVA_02000 0.81 +1.4
240,046 + BACOVA_02000 0.86 -1.0
240,046 + BACOVA_02000 0.86 -0.3
240,047 - BACOVA_02000 0.86 +0.1
240,059 + BACOVA_02000 0.87 +0.4

Or see this region's nucleotide sequence