Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01733

Experiment: D-Arabinose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01730 and BACOVA_01731 are separated by 151 nucleotidesBACOVA_01731 and BACOVA_01732 overlap by 4 nucleotidesBACOVA_01732 and BACOVA_01733 are separated by 34 nucleotidesBACOVA_01733 and BACOVA_01734 are separated by 64 nucleotidesBACOVA_01734 and BACOVA_01735 are separated by 9 nucleotides BACOVA_01730: BACOVA_01730 - VirE N-terminal domain protein, at 155,381 to 156,010 _01730 BACOVA_01731: BACOVA_01731 - hypothetical protein, at 156,162 to 156,311 _01731 BACOVA_01732: BACOVA_01732 - hypothetical protein, at 156,308 to 156,427 _01732 BACOVA_01733: BACOVA_01733 - hypothetical protein, at 156,462 to 157,868 _01733 BACOVA_01734: BACOVA_01734 - hypothetical protein, at 157,933 to 158,739 _01734 BACOVA_01735: BACOVA_01735 - hypothetical protein, at 158,749 to 161,172 _01735 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 155.506 kb on - strand, within BACOVA_01730at 155.521 kb on - strand, within BACOVA_01730at 155.540 kb on - strand, within BACOVA_01730at 155.586 kb on + strand, within BACOVA_01730at 155.636 kb on + strand, within BACOVA_01730at 155.681 kb on + strand, within BACOVA_01730at 155.695 kb on - strand, within BACOVA_01730at 155.695 kb on - strand, within BACOVA_01730at 155.717 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.820 kb on - strand, within BACOVA_01730at 155.920 kb on + strand, within BACOVA_01730at 155.936 kb on - strand, within BACOVA_01730at 155.985 kb on + strandat 155.986 kb on - strandat 156.011 kb on - strandat 156.021 kb on - strandat 156.021 kb on - strandat 156.095 kb on + strandat 156.222 kb on - strand, within BACOVA_01731at 156.229 kb on + strand, within BACOVA_01731at 156.242 kb on + strand, within BACOVA_01731at 156.242 kb on + strand, within BACOVA_01731at 156.248 kb on + strand, within BACOVA_01731at 156.257 kb on - strand, within BACOVA_01731at 156.260 kb on + strand, within BACOVA_01731at 156.260 kb on + strand, within BACOVA_01731at 156.261 kb on - strand, within BACOVA_01731at 156.261 kb on - strand, within BACOVA_01731at 156.276 kb on + strand, within BACOVA_01731at 156.320 kb on - strand, within BACOVA_01732at 156.408 kb on - strand, within BACOVA_01732at 156.408 kb on - strand, within BACOVA_01732at 156.426 kb on - strandat 156.482 kb on + strandat 156.485 kb on + strandat 156.494 kb on - strandat 156.535 kb on + strandat 156.586 kb on - strandat 156.586 kb on - strandat 156.593 kb on - strandat 156.593 kb on - strandat 156.625 kb on + strand, within BACOVA_01733at 156.626 kb on - strand, within BACOVA_01733at 156.626 kb on - strand, within BACOVA_01733at 156.630 kb on + strand, within BACOVA_01733at 156.630 kb on + strand, within BACOVA_01733at 156.737 kb on - strand, within BACOVA_01733at 156.737 kb on - strand, within BACOVA_01733at 156.895 kb on + strand, within BACOVA_01733at 156.973 kb on + strand, within BACOVA_01733at 157.014 kb on - strand, within BACOVA_01733at 157.026 kb on + strand, within BACOVA_01733at 157.027 kb on - strand, within BACOVA_01733at 157.027 kb on - strand, within BACOVA_01733at 157.056 kb on + strand, within BACOVA_01733at 157.098 kb on - strand, within BACOVA_01733at 157.098 kb on - strand, within BACOVA_01733at 157.144 kb on - strand, within BACOVA_01733at 157.346 kb on + strand, within BACOVA_01733at 157.347 kb on - strand, within BACOVA_01733at 157.351 kb on - strand, within BACOVA_01733at 157.353 kb on - strand, within BACOVA_01733at 157.353 kb on - strand, within BACOVA_01733at 157.353 kb on - strand, within BACOVA_01733at 157.449 kb on - strand, within BACOVA_01733at 157.579 kb on + strand, within BACOVA_01733at 157.580 kb on - strand, within BACOVA_01733at 157.592 kb on + strand, within BACOVA_01733at 157.642 kb on - strand, within BACOVA_01733at 157.658 kb on + strand, within BACOVA_01733at 157.659 kb on - strand, within BACOVA_01733at 157.659 kb on - strand, within BACOVA_01733at 157.779 kb on + strandat 157.780 kb on - strandat 157.782 kb on - strandat 157.811 kb on - strandat 157.813 kb on - strandat 157.813 kb on - strandat 157.822 kb on - strandat 157.834 kb on - strandat 157.836 kb on - strandat 157.854 kb on - strandat 157.864 kb on - strandat 157.910 kb on - strandat 157.917 kb on - strandat 157.924 kb on + strandat 157.924 kb on + strandat 157.925 kb on - strandat 157.967 kb on + strandat 158.001 kb on + strandat 158.002 kb on - strandat 158.002 kb on - strandat 158.026 kb on - strand, within BACOVA_01734at 158.189 kb on + strand, within BACOVA_01734at 158.225 kb on - strand, within BACOVA_01734at 158.231 kb on + strand, within BACOVA_01734at 158.232 kb on - strand, within BACOVA_01734at 158.319 kb on - strand, within BACOVA_01734at 158.322 kb on + strand, within BACOVA_01734at 158.323 kb on - strand, within BACOVA_01734at 158.357 kb on + strand, within BACOVA_01734at 158.358 kb on - strand, within BACOVA_01734at 158.373 kb on + strand, within BACOVA_01734at 158.374 kb on - strand, within BACOVA_01734at 158.423 kb on + strand, within BACOVA_01734at 158.443 kb on - strand, within BACOVA_01734at 158.485 kb on + strand, within BACOVA_01734at 158.486 kb on - strand, within BACOVA_01734at 158.490 kb on + strand, within BACOVA_01734at 158.491 kb on - strand, within BACOVA_01734at 158.551 kb on - strand, within BACOVA_01734at 158.612 kb on + strand, within BACOVA_01734at 158.612 kb on + strand, within BACOVA_01734at 158.613 kb on - strand, within BACOVA_01734at 158.632 kb on - strand, within BACOVA_01734at 158.638 kb on - strand, within BACOVA_01734at 158.638 kb on - strand, within BACOVA_01734at 158.657 kb on + strand, within BACOVA_01734at 158.657 kb on + strand, within BACOVA_01734at 158.657 kb on + strand, within BACOVA_01734at 158.658 kb on - strand, within BACOVA_01734at 158.694 kb on + strandat 158.694 kb on + strandat 158.694 kb on + strandat 158.694 kb on + strandat 158.716 kb on - strandat 158.716 kb on - strandat 158.748 kb on - strandat 158.772 kb on + strandat 158.772 kb on + strandat 158.773 kb on - strandat 158.786 kb on + strandat 158.823 kb on + strandat 158.831 kb on + strandat 158.832 kb on - strandat 158.832 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
remove
155,506 - BACOVA_01730 0.20 -0.2
155,521 - BACOVA_01730 0.22 +1.1
155,540 - BACOVA_01730 0.25 +1.1
155,586 + BACOVA_01730 0.33 +0.8
155,636 + BACOVA_01730 0.40 +0.1
155,681 + BACOVA_01730 0.48 +0.8
155,695 - BACOVA_01730 0.50 +0.8
155,695 - BACOVA_01730 0.50 +1.0
155,717 - BACOVA_01730 0.53 -0.2
155,791 - BACOVA_01730 0.65 +1.0
155,791 - BACOVA_01730 0.65 +1.4
155,791 - BACOVA_01730 0.65 +0.8
155,820 - BACOVA_01730 0.70 +2.4
155,920 + BACOVA_01730 0.86 +0.8
155,936 - BACOVA_01730 0.88 -0.2
155,985 + -0.2
155,986 - -0.3
156,011 - -1.3
156,021 - +0.4
156,021 - +2.0
156,095 + -0.2
156,222 - BACOVA_01731 0.40 +1.3
156,229 + BACOVA_01731 0.45 -0.2
156,242 + BACOVA_01731 0.53 +0.8
156,242 + BACOVA_01731 0.53 -0.9
156,248 + BACOVA_01731 0.57 +0.2
156,257 - BACOVA_01731 0.63 +1.8
156,260 + BACOVA_01731 0.65 +1.4
156,260 + BACOVA_01731 0.65 -1.7
156,261 - BACOVA_01731 0.66 -0.1
156,261 - BACOVA_01731 0.66 -2.1
156,276 + BACOVA_01731 0.76 -0.9
156,320 - BACOVA_01732 0.10 -0.5
156,408 - BACOVA_01732 0.83 +1.4
156,408 - BACOVA_01732 0.83 +0.4
156,426 - -1.2
156,482 + -2.6
156,485 + +1.4
156,494 - -0.4
156,535 + +0.3
156,586 - +0.1
156,586 - +1.4
156,593 - -1.2
156,593 - -1.0
156,625 + BACOVA_01733 0.12 -0.8
156,626 - BACOVA_01733 0.12 -1.7
156,626 - BACOVA_01733 0.12 +1.4
156,630 + BACOVA_01733 0.12 -0.2
156,630 + BACOVA_01733 0.12 +1.4
156,737 - BACOVA_01733 0.20 +1.4
156,737 - BACOVA_01733 0.20 -1.9
156,895 + BACOVA_01733 0.31 -1.5
156,973 + BACOVA_01733 0.36 +0.4
157,014 - BACOVA_01733 0.39 -1.0
157,026 + BACOVA_01733 0.40 -0.6
157,027 - BACOVA_01733 0.40 -0.4
157,027 - BACOVA_01733 0.40 -1.3
157,056 + BACOVA_01733 0.42 +0.1
157,098 - BACOVA_01733 0.45 -0.8
157,098 - BACOVA_01733 0.45 +0.4
157,144 - BACOVA_01733 0.48 -0.5
157,346 + BACOVA_01733 0.63 -1.2
157,347 - BACOVA_01733 0.63 +0.2
157,351 - BACOVA_01733 0.63 -1.6
157,353 - BACOVA_01733 0.63 -0.3
157,353 - BACOVA_01733 0.63 -1.3
157,353 - BACOVA_01733 0.63 -2.1
157,449 - BACOVA_01733 0.70 +1.0
157,579 + BACOVA_01733 0.79 -1.3
157,580 - BACOVA_01733 0.79 +0.8
157,592 + BACOVA_01733 0.80 +0.8
157,642 - BACOVA_01733 0.84 +1.4
157,658 + BACOVA_01733 0.85 -0.6
157,659 - BACOVA_01733 0.85 -0.8
157,659 - BACOVA_01733 0.85 +0.4
157,779 + +0.8
157,780 - -0.9
157,782 - -0.2
157,811 - -0.5
157,813 - +1.4
157,813 - -1.4
157,822 - +0.1
157,834 - -1.0
157,836 - +0.4
157,854 - +0.7
157,864 - +5.2
157,910 - -0.2
157,917 - -1.0
157,924 + -1.8
157,924 + -0.9
157,925 - -1.3
157,967 + +0.1
158,001 + +2.0
158,002 - -0.9
158,002 - -0.9
158,026 - BACOVA_01734 0.12 -0.6
158,189 + BACOVA_01734 0.32 +1.8
158,225 - BACOVA_01734 0.36 -2.0
158,231 + BACOVA_01734 0.37 -0.6
158,232 - BACOVA_01734 0.37 -1.8
158,319 - BACOVA_01734 0.48 +0.8
158,322 + BACOVA_01734 0.48 -1.6
158,323 - BACOVA_01734 0.48 -1.4
158,357 + BACOVA_01734 0.53 +0.4
158,358 - BACOVA_01734 0.53 +0.6
158,373 + BACOVA_01734 0.55 +1.4
158,374 - BACOVA_01734 0.55 -0.2
158,423 + BACOVA_01734 0.61 -0.4
158,443 - BACOVA_01734 0.63 +0.4
158,485 + BACOVA_01734 0.68 -1.8
158,486 - BACOVA_01734 0.69 +1.2
158,490 + BACOVA_01734 0.69 +2.4
158,491 - BACOVA_01734 0.69 -1.4
158,551 - BACOVA_01734 0.77 +0.1
158,612 + BACOVA_01734 0.84 -0.9
158,612 + BACOVA_01734 0.84 +0.6
158,613 - BACOVA_01734 0.84 +0.4
158,632 - BACOVA_01734 0.87 -0.6
158,638 - BACOVA_01734 0.87 -0.2
158,638 - BACOVA_01734 0.87 +1.0
158,657 + BACOVA_01734 0.90 +0.4
158,657 + BACOVA_01734 0.90 +1.8
158,657 + BACOVA_01734 0.90 +0.4
158,658 - BACOVA_01734 0.90 +0.2
158,694 + +0.8
158,694 + +1.6
158,694 + -1.0
158,694 + +0.1
158,716 - -1.4
158,716 - -0.4
158,748 - +0.1
158,772 + +1.1
158,772 + -1.2
158,773 - -0.7
158,786 + +0.1
158,823 + -3.0
158,831 + -0.2
158,832 - -0.5
158,832 - -0.8

Or see this region's nucleotide sequence