Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01606 and BACOVA_01607 are separated by 75 nucleotides BACOVA_01607 and BACOVA_01608 are separated by 18 nucleotides
BACOVA_01606: BACOVA_01606 - TonB-linked outer membrane protein, SusC/RagA family, at 106,228 to 109,578
_01606
BACOVA_01607: BACOVA_01607 - SusD family protein, at 109,654 to 111,513
_01607
BACOVA_01608: BACOVA_01608 - hypothetical protein, at 111,532 to 113,094
_01608
Position (kb) 109
110
111
112 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 108.664 kb on - strand, within BACOVA_01606 at 108.664 kb on - strand, within BACOVA_01606 at 108.664 kb on - strand, within BACOVA_01606 at 108.726 kb on + strand, within BACOVA_01606 at 108.727 kb on - strand, within BACOVA_01606 at 108.731 kb on + strand, within BACOVA_01606 at 108.735 kb on - strand, within BACOVA_01606 at 108.735 kb on - strand, within BACOVA_01606 at 108.865 kb on - strand, within BACOVA_01606 at 108.865 kb on - strand, within BACOVA_01606 at 108.868 kb on - strand, within BACOVA_01606 at 108.868 kb on - strand, within BACOVA_01606 at 108.873 kb on + strand, within BACOVA_01606 at 108.873 kb on + strand, within BACOVA_01606 at 108.874 kb on - strand, within BACOVA_01606 at 108.877 kb on + strand, within BACOVA_01606 at 108.878 kb on - strand, within BACOVA_01606 at 108.884 kb on - strand, within BACOVA_01606 at 108.884 kb on - strand, within BACOVA_01606 at 108.908 kb on - strand, within BACOVA_01606 at 108.950 kb on + strand, within BACOVA_01606 at 108.955 kb on + strand, within BACOVA_01606 at 108.955 kb on + strand, within BACOVA_01606 at 108.955 kb on + strand, within BACOVA_01606 at 108.955 kb on + strand, within BACOVA_01606 at 109.026 kb on + strand, within BACOVA_01606 at 109.032 kb on - strand, within BACOVA_01606 at 109.161 kb on + strand, within BACOVA_01606 at 109.161 kb on + strand, within BACOVA_01606 at 109.161 kb on + strand, within BACOVA_01606 at 109.162 kb on - strand, within BACOVA_01606 at 109.162 kb on - strand, within BACOVA_01606 at 109.228 kb on - strand, within BACOVA_01606 at 109.338 kb on - strand at 109.341 kb on + strand at 109.384 kb on + strand at 109.407 kb on + strand at 109.460 kb on - strand at 109.474 kb on - strand at 109.531 kb on + strand at 109.531 kb on + strand at 109.549 kb on - strand at 109.583 kb on + strand at 109.583 kb on + strand at 109.584 kb on - strand at 109.584 kb on - strand at 109.584 kb on - strand at 109.616 kb on - strand at 109.624 kb on - strand at 109.635 kb on + strand at 109.638 kb on + strand at 109.638 kb on + strand at 109.639 kb on - strand at 109.676 kb on + strand at 109.677 kb on - strand at 109.765 kb on + strand at 109.771 kb on + strand at 109.772 kb on - strand at 109.826 kb on - strand at 109.841 kb on + strand, within BACOVA_01607 at 109.912 kb on - strand, within BACOVA_01607 at 109.918 kb on + strand, within BACOVA_01607 at 109.919 kb on - strand, within BACOVA_01607 at 109.943 kb on + strand, within BACOVA_01607 at 109.943 kb on + strand, within BACOVA_01607 at 109.944 kb on - strand, within BACOVA_01607 at 109.944 kb on - strand, within BACOVA_01607 at 110.038 kb on + strand, within BACOVA_01607 at 110.039 kb on - strand, within BACOVA_01607 at 110.052 kb on - strand, within BACOVA_01607 at 110.054 kb on + strand, within BACOVA_01607 at 110.055 kb on - strand, within BACOVA_01607 at 110.055 kb on - strand, within BACOVA_01607 at 110.092 kb on + strand, within BACOVA_01607 at 110.144 kb on + strand, within BACOVA_01607 at 110.144 kb on + strand, within BACOVA_01607 at 110.145 kb on - strand, within BACOVA_01607 at 110.145 kb on - strand, within BACOVA_01607 at 110.150 kb on + strand, within BACOVA_01607 at 110.229 kb on + strand, within BACOVA_01607 at 110.375 kb on - strand, within BACOVA_01607 at 110.511 kb on + strand, within BACOVA_01607 at 110.515 kb on - strand, within BACOVA_01607 at 110.516 kb on + strand, within BACOVA_01607 at 110.538 kb on + strand, within BACOVA_01607 at 110.564 kb on - strand, within BACOVA_01607 at 110.603 kb on + strand, within BACOVA_01607 at 110.632 kb on + strand, within BACOVA_01607 at 110.632 kb on + strand, within BACOVA_01607 at 110.633 kb on - strand, within BACOVA_01607 at 110.642 kb on - strand, within BACOVA_01607 at 110.651 kb on + strand, within BACOVA_01607 at 110.651 kb on + strand, within BACOVA_01607 at 110.652 kb on - strand, within BACOVA_01607 at 110.671 kb on + strand, within BACOVA_01607 at 110.671 kb on + strand, within BACOVA_01607 at 110.671 kb on + strand, within BACOVA_01607 at 110.772 kb on + strand, within BACOVA_01607 at 110.784 kb on + strand, within BACOVA_01607 at 110.817 kb on + strand, within BACOVA_01607 at 110.818 kb on - strand, within BACOVA_01607 at 110.832 kb on - strand, within BACOVA_01607 at 110.832 kb on - strand, within BACOVA_01607 at 110.864 kb on - strand, within BACOVA_01607 at 110.879 kb on - strand, within BACOVA_01607 at 110.894 kb on - strand, within BACOVA_01607 at 110.895 kb on + strand, within BACOVA_01607 at 110.896 kb on - strand, within BACOVA_01607 at 110.896 kb on - strand, within BACOVA_01607 at 110.896 kb on - strand, within BACOVA_01607 at 110.959 kb on + strand, within BACOVA_01607 at 110.960 kb on - strand, within BACOVA_01607 at 110.974 kb on + strand, within BACOVA_01607 at 110.974 kb on + strand, within BACOVA_01607 at 110.974 kb on + strand, within BACOVA_01607 at 110.974 kb on + strand, within BACOVA_01607 at 110.975 kb on - strand, within BACOVA_01607 at 110.975 kb on - strand, within BACOVA_01607 at 110.976 kb on + strand, within BACOVA_01607 at 110.986 kb on - strand, within BACOVA_01607 at 110.986 kb on - strand, within BACOVA_01607 at 110.989 kb on - strand, within BACOVA_01607 at 111.021 kb on - strand, within BACOVA_01607 at 111.052 kb on - strand, within BACOVA_01607 at 111.060 kb on + strand, within BACOVA_01607 at 111.060 kb on + strand, within BACOVA_01607 at 111.064 kb on + strand, within BACOVA_01607 at 111.064 kb on + strand, within BACOVA_01607 at 111.073 kb on - strand, within BACOVA_01607 at 111.073 kb on - strand, within BACOVA_01607 at 111.203 kb on + strand, within BACOVA_01607 at 111.229 kb on - strand, within BACOVA_01607 at 111.272 kb on + strand, within BACOVA_01607 at 111.273 kb on - strand, within BACOVA_01607 at 111.273 kb on - strand, within BACOVA_01607 at 111.292 kb on + strand, within BACOVA_01607 at 111.293 kb on - strand, within BACOVA_01607 at 111.358 kb on - strand at 111.407 kb on + strand at 111.426 kb on + strand at 111.426 kb on + strand at 111.446 kb on - strand at 111.474 kb on - strand at 111.474 kb on - strand at 111.475 kb on + strand at 111.475 kb on + strand at 111.475 kb on + strand at 111.476 kb on - strand at 111.476 kb on - strand at 111.476 kb on - strand at 111.491 kb on + strand at 111.492 kb on - strand at 111.492 kb on - strand at 111.495 kb on - strand at 111.531 kb on + strand at 111.532 kb on - strand at 111.572 kb on + strand at 111.572 kb on + strand at 111.573 kb on - strand at 111.584 kb on + strand at 111.585 kb on - strand at 111.586 kb on + strand at 111.594 kb on + strand at 111.615 kb on + strand at 111.616 kb on - strand at 111.621 kb on - strand at 111.634 kb on + strand at 111.645 kb on - strand at 111.650 kb on - strand at 111.672 kb on + strand at 111.674 kb on + strand at 111.674 kb on + strand at 111.675 kb on - strand at 111.678 kb on + strand at 111.726 kb on + strand, within BACOVA_01608 at 111.802 kb on + strand, within BACOVA_01608 at 111.827 kb on - strand, within BACOVA_01608 at 111.851 kb on - strand, within BACOVA_01608 at 111.859 kb on - strand, within BACOVA_01608 at 111.878 kb on + strand, within BACOVA_01608 at 111.913 kb on + strand, within BACOVA_01608 at 111.934 kb on - strand, within BACOVA_01608 at 111.939 kb on - strand, within BACOVA_01608 at 111.940 kb on + strand, within BACOVA_01608 at 111.948 kb on - strand, within BACOVA_01608 at 112.040 kb on + strand, within BACOVA_01608 at 112.041 kb on - strand, within BACOVA_01608 at 112.090 kb on - strand, within BACOVA_01608 at 112.091 kb on + strand, within BACOVA_01608 at 112.091 kb on + strand, within BACOVA_01608 at 112.111 kb on + strand, within BACOVA_01608 at 112.112 kb on - strand, within BACOVA_01608 at 112.112 kb on - strand, within BACOVA_01608 at 112.112 kb on - strand, within BACOVA_01608 at 112.112 kb on - strand, within BACOVA_01608 at 112.112 kb on - strand, within BACOVA_01608 at 112.114 kb on - strand, within BACOVA_01608 at 112.127 kb on + strand, within BACOVA_01608 at 112.152 kb on + strand, within BACOVA_01608 at 112.152 kb on + strand, within BACOVA_01608 at 112.152 kb on + strand, within BACOVA_01608 at 112.153 kb on - strand, within BACOVA_01608 at 112.155 kb on + strand, within BACOVA_01608 at 112.156 kb on - strand, within BACOVA_01608 at 112.156 kb on - strand, within BACOVA_01608 at 112.158 kb on - strand, within BACOVA_01608 at 112.213 kb on + strand, within BACOVA_01608 at 112.215 kb on + strand, within BACOVA_01608 at 112.215 kb on + strand, within BACOVA_01608 at 112.216 kb on - strand, within BACOVA_01608 at 112.305 kb on + strand, within BACOVA_01608 at 112.347 kb on + strand, within BACOVA_01608 at 112.354 kb on + strand, within BACOVA_01608 at 112.355 kb on - strand, within BACOVA_01608 at 112.355 kb on - strand, within BACOVA_01608 at 112.397 kb on + strand, within BACOVA_01608 at 112.397 kb on + strand, within BACOVA_01608 at 112.417 kb on + strand, within BACOVA_01608 at 112.482 kb on - strand, within BACOVA_01608
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 108,664 - BACOVA_01606 0.73 +1.5 108,664 - BACOVA_01606 0.73 -0.2 108,664 - BACOVA_01606 0.73 -0.8 108,726 + BACOVA_01606 0.75 -1.5 108,727 - BACOVA_01606 0.75 -0.9 108,731 + BACOVA_01606 0.75 -0.3 108,735 - BACOVA_01606 0.75 -1.0 108,735 - BACOVA_01606 0.75 -1.4 108,865 - BACOVA_01606 0.79 +0.7 108,865 - BACOVA_01606 0.79 +0.0 108,868 - BACOVA_01606 0.79 -0.4 108,868 - BACOVA_01606 0.79 -0.9 108,873 + BACOVA_01606 0.79 -0.5 108,873 + BACOVA_01606 0.79 -0.5 108,874 - BACOVA_01606 0.79 -0.8 108,877 + BACOVA_01606 0.79 +0.3 108,878 - BACOVA_01606 0.79 +0.7 108,884 - BACOVA_01606 0.79 -1.8 108,884 - BACOVA_01606 0.79 +2.4 108,908 - BACOVA_01606 0.80 -0.7 108,950 + BACOVA_01606 0.81 +1.4 108,955 + BACOVA_01606 0.81 +0.2 108,955 + BACOVA_01606 0.81 -1.8 108,955 + BACOVA_01606 0.81 -0.1 108,955 + BACOVA_01606 0.81 +1.1 109,026 + BACOVA_01606 0.83 -1.1 109,032 - BACOVA_01606 0.84 +0.4 109,161 + BACOVA_01606 0.88 -0.7 109,161 + BACOVA_01606 0.88 +0.1 109,161 + BACOVA_01606 0.88 +0.0 109,162 - BACOVA_01606 0.88 -0.1 109,162 - BACOVA_01606 0.88 -2.1 109,228 - BACOVA_01606 0.90 +0.7 109,338 - -0.5 109,341 + +0.4 109,384 + -0.8 109,407 + +0.2 109,460 - -0.1 109,474 - -0.9 109,531 + +0.6 109,531 + -0.5 109,549 - -0.1 109,583 + +0.4 109,583 + -1.2 109,584 - -0.6 109,584 - +1.7 109,584 - -0.1 109,616 - +0.3 109,624 - -0.6 109,635 + -0.6 109,638 + -0.5 109,638 + -1.6 109,639 - +0.5 109,676 + +0.4 109,677 - +0.7 109,765 + +0.8 109,771 + +0.7 109,772 - +0.5 109,826 - -1.5 109,841 + BACOVA_01607 0.10 +1.7 109,912 - BACOVA_01607 0.14 -0.3 109,918 + BACOVA_01607 0.14 -0.4 109,919 - BACOVA_01607 0.14 -1.1 109,943 + BACOVA_01607 0.16 -1.4 109,943 + BACOVA_01607 0.16 -0.6 109,944 - BACOVA_01607 0.16 +1.7 109,944 - BACOVA_01607 0.16 -1.0 110,038 + BACOVA_01607 0.21 +1.4 110,039 - BACOVA_01607 0.21 -0.1 110,052 - BACOVA_01607 0.21 -0.6 110,054 + BACOVA_01607 0.22 +0.6 110,055 - BACOVA_01607 0.22 -0.0 110,055 - BACOVA_01607 0.22 +1.4 110,092 + BACOVA_01607 0.24 +0.7 110,144 + BACOVA_01607 0.26 +0.0 110,144 + BACOVA_01607 0.26 -0.5 110,145 - BACOVA_01607 0.26 -0.5 110,145 - BACOVA_01607 0.26 +1.4 110,150 + BACOVA_01607 0.27 +0.7 110,229 + BACOVA_01607 0.31 -1.8 110,375 - BACOVA_01607 0.39 +1.8 110,511 + BACOVA_01607 0.46 +1.9 110,515 - BACOVA_01607 0.46 -0.5 110,516 + BACOVA_01607 0.46 -0.1 110,538 + BACOVA_01607 0.48 +0.7 110,564 - BACOVA_01607 0.49 -0.4 110,603 + BACOVA_01607 0.51 -1.5 110,632 + BACOVA_01607 0.53 +0.4 110,632 + BACOVA_01607 0.53 +0.0 110,633 - BACOVA_01607 0.53 -0.5 110,642 - BACOVA_01607 0.53 -0.4 110,651 + BACOVA_01607 0.54 +1.1 110,651 + BACOVA_01607 0.54 -1.0 110,652 - BACOVA_01607 0.54 +1.1 110,671 + BACOVA_01607 0.55 +0.3 110,671 + BACOVA_01607 0.55 +0.1 110,671 + BACOVA_01607 0.55 -0.1 110,772 + BACOVA_01607 0.60 +0.7 110,784 + BACOVA_01607 0.61 -0.7 110,817 + BACOVA_01607 0.63 +2.5 110,818 - BACOVA_01607 0.63 -2.9 110,832 - BACOVA_01607 0.63 +0.2 110,832 - BACOVA_01607 0.63 +0.7 110,864 - BACOVA_01607 0.65 -0.1 110,879 - BACOVA_01607 0.66 -0.4 110,894 - BACOVA_01607 0.67 -0.9 110,895 + BACOVA_01607 0.67 +1.1 110,896 - BACOVA_01607 0.67 -0.9 110,896 - BACOVA_01607 0.67 -1.9 110,896 - BACOVA_01607 0.67 -0.6 110,959 + BACOVA_01607 0.70 +2.3 110,960 - BACOVA_01607 0.70 -1.1 110,974 + BACOVA_01607 0.71 +0.2 110,974 + BACOVA_01607 0.71 -2.0 110,974 + BACOVA_01607 0.71 -0.5 110,974 + BACOVA_01607 0.71 +0.1 110,975 - BACOVA_01607 0.71 -0.9 110,975 - BACOVA_01607 0.71 +0.8 110,976 + BACOVA_01607 0.71 -0.3 110,986 - BACOVA_01607 0.72 +1.1 110,986 - BACOVA_01607 0.72 +0.4 110,989 - BACOVA_01607 0.72 +1.4 111,021 - BACOVA_01607 0.73 -0.5 111,052 - BACOVA_01607 0.75 -0.8 111,060 + BACOVA_01607 0.76 -1.5 111,060 + BACOVA_01607 0.76 +0.1 111,064 + BACOVA_01607 0.76 +0.3 111,064 + BACOVA_01607 0.76 -1.0 111,073 - BACOVA_01607 0.76 +1.7 111,073 - BACOVA_01607 0.76 -1.2 111,203 + BACOVA_01607 0.83 -0.5 111,229 - BACOVA_01607 0.85 +0.4 111,272 + BACOVA_01607 0.87 -1.5 111,273 - BACOVA_01607 0.87 +0.1 111,273 - BACOVA_01607 0.87 -0.4 111,292 + BACOVA_01607 0.88 +1.2 111,293 - BACOVA_01607 0.88 -0.9 111,358 - -1.2 111,407 + -0.8 111,426 + -0.5 111,426 + -2.7 111,446 - -1.5 111,474 - +0.7 111,474 - +1.7 111,475 + -1.2 111,475 + -1.7 111,475 + -0.1 111,476 - -2.0 111,476 - +1.1 111,476 - +0.2 111,491 + -0.8 111,492 - -0.0 111,492 - +1.0 111,495 - +0.2 111,531 + +5.0 111,532 - -0.3 111,572 + +0.5 111,572 + -0.5 111,573 - -0.2 111,584 + -1.2 111,585 - -0.5 111,586 + +0.9 111,594 + -0.5 111,615 + +0.6 111,616 - +0.7 111,621 - -0.9 111,634 + -2.0 111,645 - +2.1 111,650 - +1.4 111,672 + -2.3 111,674 + -0.3 111,674 + +2.7 111,675 - -1.7 111,678 + +0.4 111,726 + BACOVA_01608 0.12 -0.8 111,802 + BACOVA_01608 0.17 -1.8 111,827 - BACOVA_01608 0.19 +0.1 111,851 - BACOVA_01608 0.20 -1.4 111,859 - BACOVA_01608 0.21 -0.1 111,878 + BACOVA_01608 0.22 -0.3 111,913 + BACOVA_01608 0.24 -0.3 111,934 - BACOVA_01608 0.26 -2.2 111,939 - BACOVA_01608 0.26 -0.5 111,940 + BACOVA_01608 0.26 -0.7 111,948 - BACOVA_01608 0.27 +1.1 112,040 + BACOVA_01608 0.33 +0.9 112,041 - BACOVA_01608 0.33 -0.5 112,090 - BACOVA_01608 0.36 +2.1 112,091 + BACOVA_01608 0.36 +1.9 112,091 + BACOVA_01608 0.36 +1.5 112,111 + BACOVA_01608 0.37 -0.6 112,112 - BACOVA_01608 0.37 -1.5 112,112 - BACOVA_01608 0.37 +1.7 112,112 - BACOVA_01608 0.37 +0.7 112,112 - BACOVA_01608 0.37 -0.3 112,112 - BACOVA_01608 0.37 -0.8 112,114 - BACOVA_01608 0.37 -0.1 112,127 + BACOVA_01608 0.38 +0.4 112,152 + BACOVA_01608 0.40 +0.4 112,152 + BACOVA_01608 0.40 -0.8 112,152 + BACOVA_01608 0.40 -0.1 112,153 - BACOVA_01608 0.40 +0.1 112,155 + BACOVA_01608 0.40 -0.5 112,156 - BACOVA_01608 0.40 -0.0 112,156 - BACOVA_01608 0.40 -0.8 112,158 - BACOVA_01608 0.40 -1.6 112,213 + BACOVA_01608 0.44 +0.3 112,215 + BACOVA_01608 0.44 +0.5 112,215 + BACOVA_01608 0.44 +0.6 112,216 - BACOVA_01608 0.44 -1.6 112,305 + BACOVA_01608 0.49 +1.7 112,347 + BACOVA_01608 0.52 -2.4 112,354 + BACOVA_01608 0.53 +1.7 112,355 - BACOVA_01608 0.53 +1.4 112,355 - BACOVA_01608 0.53 -1.6 112,397 + BACOVA_01608 0.55 +0.2 112,397 + BACOVA_01608 0.55 +1.3 112,417 + BACOVA_01608 0.57 +0.5 112,482 - BACOVA_01608 0.61 -1.3
Or see this region's nucleotide sequence