Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01589

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01588 and BACOVA_01589 are separated by 85 nucleotidesBACOVA_01589 and BACOVA_01590 are separated by 138 nucleotidesBACOVA_01590 and BACOVA_01591 are separated by 13 nucleotidesBACOVA_01591 and BACOVA_01592 are separated by 136 nucleotides BACOVA_01588: BACOVA_01588 - outer membrane efflux protein, at 88,520 to 89,857 _01588 BACOVA_01589: BACOVA_01589 - methionine-R-sulfoxide reductase, at 89,943 to 90,971 _01589 BACOVA_01590: BACOVA_01590 - hypothetical protein, at 91,110 to 91,625 _01590 BACOVA_01591: BACOVA_01591 - hypothetical protein, at 91,639 to 91,776 _01591 BACOVA_01592: BACOVA_01592 - hypothetical protein, at 91,913 to 92,098 _01592 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2 3at 88.968 kb on - strand, within BACOVA_01588at 88.999 kb on + strand, within BACOVA_01588at 89.137 kb on - strand, within BACOVA_01588at 89.149 kb on + strand, within BACOVA_01588at 89.149 kb on + strand, within BACOVA_01588at 89.150 kb on - strand, within BACOVA_01588at 89.153 kb on + strand, within BACOVA_01588at 89.167 kb on - strand, within BACOVA_01588at 89.214 kb on + strand, within BACOVA_01588at 89.272 kb on - strand, within BACOVA_01588at 89.272 kb on - strand, within BACOVA_01588at 89.273 kb on + strand, within BACOVA_01588at 89.273 kb on + strand, within BACOVA_01588at 89.273 kb on + strand, within BACOVA_01588at 89.274 kb on - strand, within BACOVA_01588at 89.276 kb on - strand, within BACOVA_01588at 89.276 kb on - strand, within BACOVA_01588at 89.287 kb on + strand, within BACOVA_01588at 89.291 kb on + strand, within BACOVA_01588at 89.292 kb on - strand, within BACOVA_01588at 89.292 kb on - strand, within BACOVA_01588at 89.306 kb on - strand, within BACOVA_01588at 89.333 kb on - strand, within BACOVA_01588at 89.338 kb on + strand, within BACOVA_01588at 89.338 kb on + strand, within BACOVA_01588at 89.339 kb on - strand, within BACOVA_01588at 89.339 kb on - strand, within BACOVA_01588at 89.341 kb on + strand, within BACOVA_01588at 89.344 kb on + strand, within BACOVA_01588at 89.351 kb on - strand, within BACOVA_01588at 89.412 kb on - strand, within BACOVA_01588at 89.476 kb on + strand, within BACOVA_01588at 89.477 kb on - strand, within BACOVA_01588at 89.477 kb on - strand, within BACOVA_01588at 89.478 kb on + strand, within BACOVA_01588at 89.479 kb on - strand, within BACOVA_01588at 89.485 kb on + strand, within BACOVA_01588at 89.557 kb on - strand, within BACOVA_01588at 89.622 kb on - strand, within BACOVA_01588at 89.649 kb on - strand, within BACOVA_01588at 89.741 kb on + strandat 89.742 kb on - strandat 89.782 kb on + strandat 89.798 kb on + strandat 89.798 kb on + strandat 89.799 kb on - strandat 89.799 kb on - strandat 89.805 kb on - strandat 89.819 kb on - strandat 89.878 kb on + strandat 89.879 kb on - strandat 89.879 kb on - strandat 89.882 kb on - strandat 89.882 kb on - strandat 89.882 kb on - strandat 89.886 kb on + strandat 89.887 kb on - strandat 89.887 kb on - strandat 89.898 kb on - strandat 89.901 kb on + strandat 89.921 kb on - strandat 89.923 kb on + strandat 89.923 kb on + strandat 89.949 kb on + strandat 89.954 kb on + strandat 89.955 kb on - strandat 89.955 kb on - strandat 89.971 kb on + strandat 90.089 kb on - strand, within BACOVA_01589at 90.095 kb on + strand, within BACOVA_01589at 90.095 kb on + strand, within BACOVA_01589at 90.104 kb on - strand, within BACOVA_01589at 90.119 kb on + strand, within BACOVA_01589at 90.138 kb on + strand, within BACOVA_01589at 90.138 kb on + strand, within BACOVA_01589at 90.182 kb on - strand, within BACOVA_01589at 90.192 kb on + strand, within BACOVA_01589at 90.208 kb on + strand, within BACOVA_01589at 90.233 kb on - strand, within BACOVA_01589at 90.235 kb on - strand, within BACOVA_01589at 90.254 kb on + strand, within BACOVA_01589at 90.254 kb on + strand, within BACOVA_01589at 90.294 kb on + strand, within BACOVA_01589at 90.296 kb on + strand, within BACOVA_01589at 90.296 kb on + strand, within BACOVA_01589at 90.296 kb on + strand, within BACOVA_01589at 90.297 kb on - strand, within BACOVA_01589at 90.297 kb on - strand, within BACOVA_01589at 90.297 kb on - strand, within BACOVA_01589at 90.297 kb on - strand, within BACOVA_01589at 90.309 kb on + strand, within BACOVA_01589at 90.316 kb on + strand, within BACOVA_01589at 90.316 kb on + strand, within BACOVA_01589at 90.316 kb on + strand, within BACOVA_01589at 90.317 kb on - strand, within BACOVA_01589at 90.317 kb on - strand, within BACOVA_01589at 90.358 kb on + strand, within BACOVA_01589at 90.372 kb on + strand, within BACOVA_01589at 90.383 kb on + strand, within BACOVA_01589at 90.383 kb on + strand, within BACOVA_01589at 90.384 kb on - strand, within BACOVA_01589at 90.397 kb on + strand, within BACOVA_01589at 90.432 kb on + strand, within BACOVA_01589at 90.433 kb on - strand, within BACOVA_01589at 90.490 kb on + strand, within BACOVA_01589at 90.491 kb on - strand, within BACOVA_01589at 90.527 kb on + strand, within BACOVA_01589at 90.528 kb on - strand, within BACOVA_01589at 90.634 kb on - strand, within BACOVA_01589at 90.661 kb on - strand, within BACOVA_01589at 90.664 kb on + strand, within BACOVA_01589at 90.664 kb on + strand, within BACOVA_01589at 90.668 kb on + strand, within BACOVA_01589at 90.669 kb on - strand, within BACOVA_01589at 90.669 kb on - strand, within BACOVA_01589at 90.672 kb on - strand, within BACOVA_01589at 90.672 kb on - strand, within BACOVA_01589at 90.779 kb on + strand, within BACOVA_01589at 90.780 kb on - strand, within BACOVA_01589at 90.780 kb on - strand, within BACOVA_01589at 90.797 kb on - strand, within BACOVA_01589at 90.800 kb on + strand, within BACOVA_01589at 90.815 kb on + strand, within BACOVA_01589at 90.951 kb on + strandat 90.952 kb on - strandat 90.952 kb on - strandat 90.955 kb on + strandat 90.974 kb on - strandat 90.985 kb on - strandat 90.999 kb on + strandat 90.999 kb on + strandat 91.015 kb on - strandat 91.143 kb on - strandat 91.143 kb on - strandat 91.167 kb on - strand, within BACOVA_01590at 91.199 kb on + strand, within BACOVA_01590at 91.213 kb on + strand, within BACOVA_01590at 91.214 kb on - strand, within BACOVA_01590at 91.220 kb on + strand, within BACOVA_01590at 91.222 kb on + strand, within BACOVA_01590at 91.222 kb on + strand, within BACOVA_01590at 91.222 kb on + strand, within BACOVA_01590at 91.222 kb on + strand, within BACOVA_01590at 91.235 kb on + strand, within BACOVA_01590at 91.236 kb on - strand, within BACOVA_01590at 91.256 kb on - strand, within BACOVA_01590at 91.283 kb on - strand, within BACOVA_01590at 91.283 kb on - strand, within BACOVA_01590at 91.312 kb on + strand, within BACOVA_01590at 91.313 kb on - strand, within BACOVA_01590at 91.313 kb on - strand, within BACOVA_01590at 91.332 kb on - strand, within BACOVA_01590at 91.339 kb on + strand, within BACOVA_01590at 91.340 kb on - strand, within BACOVA_01590at 91.340 kb on - strand, within BACOVA_01590at 91.343 kb on + strand, within BACOVA_01590at 91.344 kb on - strand, within BACOVA_01590at 91.345 kb on + strand, within BACOVA_01590at 91.346 kb on - strand, within BACOVA_01590at 91.360 kb on + strand, within BACOVA_01590at 91.413 kb on + strand, within BACOVA_01590at 91.436 kb on + strand, within BACOVA_01590at 91.480 kb on + strand, within BACOVA_01590at 91.510 kb on - strand, within BACOVA_01590at 91.526 kb on + strand, within BACOVA_01590at 91.527 kb on - strand, within BACOVA_01590at 91.591 kb on - strandat 91.591 kb on - strandat 91.611 kb on + strandat 91.612 kb on - strandat 91.616 kb on + strandat 91.616 kb on + strandat 91.626 kb on - strandat 91.634 kb on - strandat 91.755 kb on - strand, within BACOVA_01591at 91.841 kb on + strandat 91.890 kb on + strandat 91.891 kb on - strandat 91.901 kb on - strandat 91.902 kb on + strandat 91.903 kb on - strandat 91.943 kb on + strand, within BACOVA_01592at 91.943 kb on + strand, within BACOVA_01592at 91.951 kb on - strand, within BACOVA_01592at 91.965 kb on + strand, within BACOVA_01592

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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88,968 - BACOVA_01588 0.33 -0.3
88,999 + BACOVA_01588 0.36 -1.6
89,137 - BACOVA_01588 0.46 -0.3
89,149 + BACOVA_01588 0.47 -1.1
89,149 + BACOVA_01588 0.47 -0.9
89,150 - BACOVA_01588 0.47 -0.8
89,153 + BACOVA_01588 0.47 -1.1
89,167 - BACOVA_01588 0.48 -1.3
89,214 + BACOVA_01588 0.52 -1.0
89,272 - BACOVA_01588 0.56 -0.8
89,272 - BACOVA_01588 0.56 -0.6
89,273 + BACOVA_01588 0.56 -0.8
89,273 + BACOVA_01588 0.56 -0.2
89,273 + BACOVA_01588 0.56 -0.9
89,274 - BACOVA_01588 0.56 +0.6
89,276 - BACOVA_01588 0.57 -0.3
89,276 - BACOVA_01588 0.57 +3.3
89,287 + BACOVA_01588 0.57 -0.1
89,291 + BACOVA_01588 0.58 -0.2
89,292 - BACOVA_01588 0.58 -0.8
89,292 - BACOVA_01588 0.58 -0.4
89,306 - BACOVA_01588 0.59 -0.7
89,333 - BACOVA_01588 0.61 +1.1
89,338 + BACOVA_01588 0.61 -1.2
89,338 + BACOVA_01588 0.61 -1.7
89,339 - BACOVA_01588 0.61 +0.4
89,339 - BACOVA_01588 0.61 -0.5
89,341 + BACOVA_01588 0.61 -1.5
89,344 + BACOVA_01588 0.62 -1.3
89,351 - BACOVA_01588 0.62 -0.5
89,412 - BACOVA_01588 0.67 -0.6
89,476 + BACOVA_01588 0.71 -0.1
89,477 - BACOVA_01588 0.72 -0.5
89,477 - BACOVA_01588 0.72 +2.1
89,478 + BACOVA_01588 0.72 +1.2
89,479 - BACOVA_01588 0.72 -0.6
89,485 + BACOVA_01588 0.72 -0.9
89,557 - BACOVA_01588 0.78 -0.8
89,622 - BACOVA_01588 0.82 -1.7
89,649 - BACOVA_01588 0.84 +1.1
89,741 + -1.0
89,742 - -0.5
89,782 + -0.3
89,798 + +0.9
89,798 + +1.1
89,799 - +0.4
89,799 - +0.3
89,805 - -1.2
89,819 - -0.7
89,878 + +0.6
89,879 - +1.1
89,879 - -0.9
89,882 - -0.1
89,882 - -2.5
89,882 - +1.1
89,886 + +0.1
89,887 - +0.6
89,887 - +1.0
89,898 - -0.1
89,901 + -2.4
89,921 - +0.9
89,923 + -0.1
89,923 + -1.4
89,949 + +0.5
89,954 + -0.8
89,955 - +1.5
89,955 - -0.7
89,971 + +0.4
90,089 - BACOVA_01589 0.14 -0.2
90,095 + BACOVA_01589 0.15 -0.0
90,095 + BACOVA_01589 0.15 +0.4
90,104 - BACOVA_01589 0.16 -0.2
90,119 + BACOVA_01589 0.17 +0.0
90,138 + BACOVA_01589 0.19 -0.6
90,138 + BACOVA_01589 0.19 -1.3
90,182 - BACOVA_01589 0.23 -0.3
90,192 + BACOVA_01589 0.24 +1.1
90,208 + BACOVA_01589 0.26 +0.7
90,233 - BACOVA_01589 0.28 +0.1
90,235 - BACOVA_01589 0.28 +1.7
90,254 + BACOVA_01589 0.30 -0.1
90,254 + BACOVA_01589 0.30 +0.0
90,294 + BACOVA_01589 0.34 -0.6
90,296 + BACOVA_01589 0.34 -0.8
90,296 + BACOVA_01589 0.34 -0.2
90,296 + BACOVA_01589 0.34 -0.8
90,297 - BACOVA_01589 0.34 +1.7
90,297 - BACOVA_01589 0.34 -0.9
90,297 - BACOVA_01589 0.34 -0.2
90,297 - BACOVA_01589 0.34 +0.5
90,309 + BACOVA_01589 0.36 +1.0
90,316 + BACOVA_01589 0.36 +0.4
90,316 + BACOVA_01589 0.36 -0.6
90,316 + BACOVA_01589 0.36 +0.3
90,317 - BACOVA_01589 0.36 -1.3
90,317 - BACOVA_01589 0.36 -1.6
90,358 + BACOVA_01589 0.40 -1.1
90,372 + BACOVA_01589 0.42 -0.9
90,383 + BACOVA_01589 0.43 -0.3
90,383 + BACOVA_01589 0.43 -0.9
90,384 - BACOVA_01589 0.43 -1.0
90,397 + BACOVA_01589 0.44 +0.1
90,432 + BACOVA_01589 0.48 +0.0
90,433 - BACOVA_01589 0.48 +2.7
90,490 + BACOVA_01589 0.53 -0.4
90,491 - BACOVA_01589 0.53 +0.5
90,527 + BACOVA_01589 0.57 -0.3
90,528 - BACOVA_01589 0.57 -1.0
90,634 - BACOVA_01589 0.67 -0.4
90,661 - BACOVA_01589 0.70 -1.8
90,664 + BACOVA_01589 0.70 -1.0
90,664 + BACOVA_01589 0.70 +2.1
90,668 + BACOVA_01589 0.70 +1.1
90,669 - BACOVA_01589 0.71 +0.7
90,669 - BACOVA_01589 0.71 -0.5
90,672 - BACOVA_01589 0.71 +2.7
90,672 - BACOVA_01589 0.71 -0.6
90,779 + BACOVA_01589 0.81 -1.5
90,780 - BACOVA_01589 0.81 +3.2
90,780 - BACOVA_01589 0.81 -2.2
90,797 - BACOVA_01589 0.83 +0.0
90,800 + BACOVA_01589 0.83 +0.5
90,815 + BACOVA_01589 0.85 -2.0
90,951 + -0.1
90,952 - +0.4
90,952 - +0.3
90,955 + -0.4
90,974 - -0.3
90,985 - +1.1
90,999 + -0.2
90,999 + -0.4
91,015 - -1.1
91,143 - -0.5
91,143 - +0.6
91,167 - BACOVA_01590 0.11 -1.8
91,199 + BACOVA_01590 0.17 -2.0
91,213 + BACOVA_01590 0.20 +0.0
91,214 - BACOVA_01590 0.20 +0.0
91,220 + BACOVA_01590 0.21 +0.4
91,222 + BACOVA_01590 0.22 -0.0
91,222 + BACOVA_01590 0.22 +0.7
91,222 + BACOVA_01590 0.22 -0.6
91,222 + BACOVA_01590 0.22 +0.1
91,235 + BACOVA_01590 0.24 -0.8
91,236 - BACOVA_01590 0.24 -0.4
91,256 - BACOVA_01590 0.28 -1.2
91,283 - BACOVA_01590 0.34 -0.2
91,283 - BACOVA_01590 0.34 -0.4
91,312 + BACOVA_01590 0.39 -0.5
91,313 - BACOVA_01590 0.39 +0.3
91,313 - BACOVA_01590 0.39 -0.2
91,332 - BACOVA_01590 0.43 -0.5
91,339 + BACOVA_01590 0.44 +1.7
91,340 - BACOVA_01590 0.45 +0.1
91,340 - BACOVA_01590 0.45 +0.5
91,343 + BACOVA_01590 0.45 -1.6
91,344 - BACOVA_01590 0.45 +0.5
91,345 + BACOVA_01590 0.46 -0.4
91,346 - BACOVA_01590 0.46 -1.6
91,360 + BACOVA_01590 0.48 -0.3
91,413 + BACOVA_01590 0.59 -0.3
91,436 + BACOVA_01590 0.63 +0.1
91,480 + BACOVA_01590 0.72 -0.9
91,510 - BACOVA_01590 0.78 +0.4
91,526 + BACOVA_01590 0.81 -1.8
91,527 - BACOVA_01590 0.81 +0.5
91,591 - -1.1
91,591 - -0.1
91,611 + -1.6
91,612 - -0.9
91,616 + -1.2
91,616 + -1.2
91,626 - +0.7
91,634 - +0.0
91,755 - BACOVA_01591 0.84 +0.2
91,841 + +2.0
91,890 + +3.7
91,891 - -2.0
91,901 - -1.1
91,902 + -0.1
91,903 - -0.9
91,943 + BACOVA_01592 0.16 +1.7
91,943 + BACOVA_01592 0.16 -0.3
91,951 - BACOVA_01592 0.20 -0.8
91,965 + BACOVA_01592 0.28 +1.1

Or see this region's nucleotide sequence