Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01549 and BACOVA_01550 are separated by 4 nucleotides BACOVA_01550 and BACOVA_01551 are separated by 88 nucleotides BACOVA_01551 and BACOVA_01552 are separated by 17 nucleotides
BACOVA_01549: BACOVA_01549 - hypothetical protein, at 49,472 to 50,788
_01549
BACOVA_01550: BACOVA_01550 - hypothetical protein, at 50,793 to 51,362
_01550
BACOVA_01551: BACOVA_01551 - hypothetical protein, at 51,451 to 51,612
_01551
BACOVA_01552: BACOVA_01552 - transcriptional regulator, AraC family, at 51,630 to 52,544
_01552
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 49.887 kb on + strand, within BACOVA_01549 at 49.955 kb on + strand, within BACOVA_01549 at 49.955 kb on + strand, within BACOVA_01549 at 49.955 kb on + strand, within BACOVA_01549 at 50.099 kb on - strand, within BACOVA_01549 at 50.099 kb on - strand, within BACOVA_01549 at 50.161 kb on + strand, within BACOVA_01549 at 50.163 kb on + strand, within BACOVA_01549 at 50.194 kb on + strand, within BACOVA_01549 at 50.255 kb on + strand, within BACOVA_01549 at 50.255 kb on + strand, within BACOVA_01549 at 50.255 kb on + strand, within BACOVA_01549 at 50.318 kb on - strand, within BACOVA_01549 at 50.318 kb on - strand, within BACOVA_01549 at 50.416 kb on - strand, within BACOVA_01549 at 50.503 kb on - strand, within BACOVA_01549 at 50.613 kb on - strand, within BACOVA_01549 at 50.687 kb on + strand at 50.714 kb on - strand at 50.714 kb on - strand at 50.766 kb on + strand at 50.766 kb on + strand at 50.766 kb on + strand at 50.767 kb on - strand at 50.768 kb on + strand at 50.769 kb on - strand at 50.770 kb on + strand at 50.799 kb on + strand at 50.806 kb on + strand at 50.806 kb on + strand at 50.806 kb on + strand at 50.808 kb on + strand at 50.891 kb on - strand, within BACOVA_01550 at 50.974 kb on + strand, within BACOVA_01550 at 50.974 kb on + strand, within BACOVA_01550 at 50.975 kb on - strand, within BACOVA_01550 at 51.026 kb on + strand, within BACOVA_01550 at 51.027 kb on - strand, within BACOVA_01550 at 51.058 kb on + strand, within BACOVA_01550 at 51.111 kb on + strand, within BACOVA_01550 at 51.118 kb on + strand, within BACOVA_01550 at 51.184 kb on + strand, within BACOVA_01550 at 51.185 kb on - strand, within BACOVA_01550 at 51.248 kb on + strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.342 kb on + strand at 51.349 kb on - strand at 51.352 kb on + strand at 51.370 kb on + strand at 51.373 kb on + strand at 51.377 kb on + strand at 51.378 kb on - strand at 51.544 kb on - strand, within BACOVA_01551 at 51.545 kb on + strand, within BACOVA_01551 at 51.546 kb on - strand, within BACOVA_01551 at 51.547 kb on + strand, within BACOVA_01551 at 51.568 kb on - strand, within BACOVA_01551 at 51.663 kb on + strand at 51.664 kb on - strand at 51.693 kb on + strand at 51.724 kb on - strand, within BACOVA_01552 at 51.764 kb on + strand, within BACOVA_01552 at 51.764 kb on + strand, within BACOVA_01552 at 51.765 kb on - strand, within BACOVA_01552 at 51.765 kb on - strand, within BACOVA_01552 at 51.813 kb on - strand, within BACOVA_01552 at 51.860 kb on - strand, within BACOVA_01552 at 51.962 kb on - strand, within BACOVA_01552 at 51.982 kb on + strand, within BACOVA_01552 at 51.982 kb on + strand, within BACOVA_01552 at 51.999 kb on + strand, within BACOVA_01552 at 51.999 kb on + strand, within BACOVA_01552 at 52.000 kb on - strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 49,887 + BACOVA_01549 0.32 -0.3 49,955 + BACOVA_01549 0.37 -1.1 49,955 + BACOVA_01549 0.37 -1.9 49,955 + BACOVA_01549 0.37 +0.4 50,099 - BACOVA_01549 0.48 +0.7 50,099 - BACOVA_01549 0.48 +0.9 50,161 + BACOVA_01549 0.52 +2.0 50,163 + BACOVA_01549 0.52 +0.2 50,194 + BACOVA_01549 0.55 -0.9 50,255 + BACOVA_01549 0.59 -0.1 50,255 + BACOVA_01549 0.59 +0.7 50,255 + BACOVA_01549 0.59 -1.7 50,318 - BACOVA_01549 0.64 -0.3 50,318 - BACOVA_01549 0.64 +0.8 50,416 - BACOVA_01549 0.72 -0.2 50,503 - BACOVA_01549 0.78 +0.7 50,613 - BACOVA_01549 0.87 +0.5 50,687 + -2.3 50,714 - -0.1 50,714 - +1.7 50,766 + -1.2 50,766 + +2.7 50,766 + -0.3 50,767 - +0.1 50,768 + -0.5 50,769 - +0.1 50,770 + +0.1 50,799 + -0.2 50,806 + +1.1 50,806 + +1.7 50,806 + -0.5 50,808 + +1.1 50,891 - BACOVA_01550 0.17 +0.7 50,974 + BACOVA_01550 0.32 +0.7 50,974 + BACOVA_01550 0.32 -1.1 50,975 - BACOVA_01550 0.32 +1.4 51,026 + BACOVA_01550 0.41 +0.5 51,027 - BACOVA_01550 0.41 +0.8 51,058 + BACOVA_01550 0.46 -1.2 51,111 + BACOVA_01550 0.56 -1.2 51,118 + BACOVA_01550 0.57 -0.8 51,184 + BACOVA_01550 0.69 +0.6 51,185 - BACOVA_01550 0.69 +1.1 51,248 + BACOVA_01550 0.80 +0.7 51,249 - BACOVA_01550 0.80 -0.5 51,249 - BACOVA_01550 0.80 +0.7 51,249 - BACOVA_01550 0.80 +1.1 51,342 + -0.6 51,349 - +1.2 51,352 + +1.1 51,370 + +0.5 51,373 + -1.4 51,377 + +0.4 51,378 - +2.0 51,544 - BACOVA_01551 0.57 +0.1 51,545 + BACOVA_01551 0.58 +1.1 51,546 - BACOVA_01551 0.59 +1.9 51,547 + BACOVA_01551 0.59 -0.8 51,568 - BACOVA_01551 0.72 +1.1 51,663 + +0.5 51,664 - +0.9 51,693 + -0.3 51,724 - BACOVA_01552 0.10 -0.1 51,764 + BACOVA_01552 0.15 +1.7 51,764 + BACOVA_01552 0.15 -1.2 51,765 - BACOVA_01552 0.15 +0.2 51,765 - BACOVA_01552 0.15 -0.1 51,813 - BACOVA_01552 0.20 +0.9 51,860 - BACOVA_01552 0.25 +0.4 51,962 - BACOVA_01552 0.36 +1.4 51,982 + BACOVA_01552 0.38 -0.0 51,982 + BACOVA_01552 0.38 -0.3 51,999 + BACOVA_01552 0.40 +0.4 51,999 + BACOVA_01552 0.40 -0.3 52,000 - BACOVA_01552 0.40 +0.7 52,240 + BACOVA_01552 0.67 +1.1 52,240 + BACOVA_01552 0.67 -0.6 52,240 + BACOVA_01552 0.67 -0.2 52,240 + BACOVA_01552 0.67 -0.7
Or see this region's nucleotide sequence