Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01389 and BACOVA_01390 are separated by 42 nucleotides BACOVA_01390 and BACOVA_01391 are separated by 10 nucleotides BACOVA_01391 and BACOVA_01392 overlap by 14 nucleotides BACOVA_01392 and BACOVA_01393 overlap by 6 nucleotides
BACOVA_01389: BACOVA_01389 - RND transporter, HAE1 family, at 53,452 to 56,649
_01389
BACOVA_01390: BACOVA_01390 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 56,692 to 58,056
_01390
BACOVA_01391: BACOVA_01391 - transcriptional regulator, TetR family, at 58,067 to 58,675
_01391
BACOVA_01392: BACOVA_01392 - hypothetical protein, at 58,662 to 58,784
_01392
BACOVA_01393: BACOVA_01393 - hypothetical protein, at 58,779 to 59,654
_01393
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.692 kb on + strand, within BACOVA_01389 at 55.720 kb on + strand, within BACOVA_01389 at 55.721 kb on - strand, within BACOVA_01389 at 55.721 kb on - strand, within BACOVA_01389 at 55.754 kb on - strand, within BACOVA_01389 at 55.879 kb on + strand, within BACOVA_01389 at 55.908 kb on + strand, within BACOVA_01389 at 55.908 kb on + strand, within BACOVA_01389 at 55.909 kb on - strand, within BACOVA_01389 at 55.912 kb on + strand, within BACOVA_01389 at 55.913 kb on - strand, within BACOVA_01389 at 55.913 kb on - strand, within BACOVA_01389 at 55.915 kb on - strand, within BACOVA_01389 at 55.953 kb on + strand, within BACOVA_01389 at 55.954 kb on - strand, within BACOVA_01389 at 55.954 kb on - strand, within BACOVA_01389 at 55.954 kb on - strand, within BACOVA_01389 at 55.956 kb on + strand, within BACOVA_01389 at 56.015 kb on - strand, within BACOVA_01389 at 56.026 kb on + strand, within BACOVA_01389 at 56.034 kb on + strand, within BACOVA_01389 at 56.105 kb on - strand, within BACOVA_01389 at 56.126 kb on - strand, within BACOVA_01389 at 56.223 kb on + strand, within BACOVA_01389 at 56.224 kb on - strand, within BACOVA_01389 at 56.224 kb on - strand, within BACOVA_01389 at 56.247 kb on + strand, within BACOVA_01389 at 56.247 kb on + strand, within BACOVA_01389 at 56.320 kb on - strand, within BACOVA_01389 at 56.469 kb on - strand at 56.469 kb on - strand at 56.471 kb on + strand at 56.472 kb on - strand at 56.472 kb on - strand at 56.478 kb on + strand at 56.478 kb on + strand at 56.491 kb on - strand at 56.526 kb on + strand at 56.527 kb on - strand at 56.527 kb on - strand at 56.632 kb on - strand at 56.648 kb on - strand at 56.648 kb on - strand at 56.678 kb on + strand at 56.683 kb on + strand at 56.736 kb on + strand at 56.737 kb on - strand at 56.749 kb on + strand at 56.758 kb on + strand at 56.792 kb on - strand at 56.869 kb on + strand, within BACOVA_01390 at 56.870 kb on - strand, within BACOVA_01390 at 56.870 kb on - strand, within BACOVA_01390 at 56.978 kb on - strand, within BACOVA_01390 at 57.040 kb on - strand, within BACOVA_01390 at 57.176 kb on + strand, within BACOVA_01390 at 57.192 kb on + strand, within BACOVA_01390 at 57.196 kb on + strand, within BACOVA_01390 at 57.197 kb on - strand, within BACOVA_01390 at 57.197 kb on - strand, within BACOVA_01390 at 57.197 kb on - strand, within BACOVA_01390 at 57.199 kb on + strand, within BACOVA_01390 at 57.199 kb on + strand, within BACOVA_01390 at 57.200 kb on - strand, within BACOVA_01390 at 57.233 kb on + strand, within BACOVA_01390 at 57.341 kb on - strand, within BACOVA_01390 at 57.348 kb on + strand, within BACOVA_01390 at 57.350 kb on + strand, within BACOVA_01390 at 57.350 kb on - strand, within BACOVA_01390 at 57.351 kb on - strand, within BACOVA_01390 at 57.354 kb on + strand, within BACOVA_01390 at 57.498 kb on - strand, within BACOVA_01390 at 57.559 kb on + strand, within BACOVA_01390 at 57.590 kb on - strand, within BACOVA_01390 at 57.856 kb on + strand, within BACOVA_01390 at 57.857 kb on - strand, within BACOVA_01390 at 57.986 kb on + strand at 58.017 kb on - strand at 58.055 kb on - strand at 58.063 kb on - strand at 58.063 kb on - strand at 58.063 kb on - strand at 58.063 kb on - strand at 58.066 kb on + strand at 58.066 kb on + strand at 58.066 kb on + strand at 58.066 kb on + strand at 58.104 kb on - strand at 58.156 kb on + strand, within BACOVA_01391 at 58.157 kb on - strand, within BACOVA_01391 at 58.158 kb on + strand, within BACOVA_01391 at 58.194 kb on - strand, within BACOVA_01391 at 58.285 kb on - strand, within BACOVA_01391 at 58.285 kb on - strand, within BACOVA_01391 at 58.379 kb on - strand, within BACOVA_01391 at 58.465 kb on + strand, within BACOVA_01391 at 58.576 kb on + strand, within BACOVA_01391 at 58.576 kb on + strand, within BACOVA_01391 at 58.577 kb on - strand, within BACOVA_01391 at 58.577 kb on - strand, within BACOVA_01391 at 58.628 kb on + strand at 58.629 kb on - strand at 58.629 kb on - strand at 58.631 kb on - strand at 58.654 kb on + strand at 58.721 kb on - strand, within BACOVA_01392 at 58.747 kb on + strand, within BACOVA_01392 at 58.747 kb on + strand, within BACOVA_01392 at 58.748 kb on - strand, within BACOVA_01392 at 58.754 kb on + strand, within BACOVA_01392 at 58.755 kb on - strand, within BACOVA_01392 at 58.755 kb on - strand, within BACOVA_01392 at 58.755 kb on - strand, within BACOVA_01392 at 58.801 kb on - strand at 58.839 kb on + strand at 58.924 kb on + strand, within BACOVA_01393 at 58.946 kb on + strand, within BACOVA_01393 at 58.947 kb on - strand, within BACOVA_01393 at 58.979 kb on + strand, within BACOVA_01393 at 58.980 kb on - strand, within BACOVA_01393 at 58.980 kb on - strand, within BACOVA_01393 at 58.980 kb on - strand, within BACOVA_01393
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 55,692 + BACOVA_01389 0.70 +1.6 55,720 + BACOVA_01389 0.71 +1.6 55,721 - BACOVA_01389 0.71 -1.7 55,721 - BACOVA_01389 0.71 +1.0 55,754 - BACOVA_01389 0.72 +0.1 55,879 + BACOVA_01389 0.76 -0.6 55,908 + BACOVA_01389 0.77 +0.3 55,908 + BACOVA_01389 0.77 +0.3 55,909 - BACOVA_01389 0.77 -1.1 55,912 + BACOVA_01389 0.77 -1.2 55,913 - BACOVA_01389 0.77 -0.5 55,913 - BACOVA_01389 0.77 -0.2 55,915 - BACOVA_01389 0.77 -0.7 55,953 + BACOVA_01389 0.78 -0.2 55,954 - BACOVA_01389 0.78 -0.6 55,954 - BACOVA_01389 0.78 -0.8 55,954 - BACOVA_01389 0.78 -2.0 55,956 + BACOVA_01389 0.78 +0.3 56,015 - BACOVA_01389 0.80 -0.9 56,026 + BACOVA_01389 0.80 +1.0 56,034 + BACOVA_01389 0.81 +1.6 56,105 - BACOVA_01389 0.83 -0.9 56,126 - BACOVA_01389 0.84 -0.2 56,223 + BACOVA_01389 0.87 -0.8 56,224 - BACOVA_01389 0.87 -0.1 56,224 - BACOVA_01389 0.87 +0.8 56,247 + BACOVA_01389 0.87 -0.2 56,247 + BACOVA_01389 0.87 -2.2 56,320 - BACOVA_01389 0.90 -0.2 56,469 - +1.7 56,469 - -0.2 56,471 + -0.6 56,472 - +0.3 56,472 - +0.6 56,478 + +0.3 56,478 + -0.7 56,491 - -2.0 56,526 + +1.0 56,527 - -0.1 56,527 - -1.0 56,632 - -0.0 56,648 - -1.9 56,648 - -1.1 56,678 + -1.2 56,683 + -0.4 56,736 + +1.4 56,737 - -0.8 56,749 + +0.4 56,758 + -0.4 56,792 - -1.3 56,869 + BACOVA_01390 0.13 -0.1 56,870 - BACOVA_01390 0.13 +0.8 56,870 - BACOVA_01390 0.13 -0.6 56,978 - BACOVA_01390 0.21 +0.6 57,040 - BACOVA_01390 0.25 +0.7 57,176 + BACOVA_01390 0.35 -0.7 57,192 + BACOVA_01390 0.37 -2.4 57,196 + BACOVA_01390 0.37 +1.3 57,197 - BACOVA_01390 0.37 +0.6 57,197 - BACOVA_01390 0.37 +0.8 57,197 - BACOVA_01390 0.37 +1.8 57,199 + BACOVA_01390 0.37 +0.4 57,199 + BACOVA_01390 0.37 -0.5 57,200 - BACOVA_01390 0.37 +0.6 57,233 + BACOVA_01390 0.40 +1.4 57,341 - BACOVA_01390 0.48 -1.1 57,348 + BACOVA_01390 0.48 -0.0 57,350 + BACOVA_01390 0.48 -0.0 57,350 - BACOVA_01390 0.48 +0.3 57,351 - BACOVA_01390 0.48 +1.0 57,354 + BACOVA_01390 0.48 -1.1 57,498 - BACOVA_01390 0.59 -1.3 57,559 + BACOVA_01390 0.64 -0.9 57,590 - BACOVA_01390 0.66 +0.1 57,856 + BACOVA_01390 0.85 -0.7 57,857 - BACOVA_01390 0.85 -0.0 57,986 + +1.3 58,017 - -0.2 58,055 - +0.3 58,063 - -1.2 58,063 - -0.9 58,063 - -1.2 58,063 - -0.7 58,066 + -1.2 58,066 + -0.5 58,066 + -1.6 58,066 + +0.1 58,104 - +0.3 58,156 + BACOVA_01391 0.15 -0.4 58,157 - BACOVA_01391 0.15 +0.2 58,158 + BACOVA_01391 0.15 +1.0 58,194 - BACOVA_01391 0.21 -1.5 58,285 - BACOVA_01391 0.36 +1.4 58,285 - BACOVA_01391 0.36 -0.0 58,379 - BACOVA_01391 0.51 +0.3 58,465 + BACOVA_01391 0.65 -0.6 58,576 + BACOVA_01391 0.84 -0.9 58,576 + BACOVA_01391 0.84 -0.3 58,577 - BACOVA_01391 0.84 +2.6 58,577 - BACOVA_01391 0.84 +0.3 58,628 + +1.0 58,629 - +0.8 58,629 - -1.8 58,631 - -1.4 58,654 + -1.0 58,721 - BACOVA_01392 0.48 +0.1 58,747 + BACOVA_01392 0.69 -0.7 58,747 + BACOVA_01392 0.69 -1.1 58,748 - BACOVA_01392 0.70 -1.0 58,754 + BACOVA_01392 0.75 -1.2 58,755 - BACOVA_01392 0.76 -0.9 58,755 - BACOVA_01392 0.76 -0.2 58,755 - BACOVA_01392 0.76 +0.5 58,801 - -0.4 58,839 + -0.1 58,924 + BACOVA_01393 0.17 -0.8 58,946 + BACOVA_01393 0.19 +1.0 58,947 - BACOVA_01393 0.19 +0.3 58,979 + BACOVA_01393 0.23 -0.5 58,980 - BACOVA_01393 0.23 -0.9 58,980 - BACOVA_01393 0.23 +0.1 58,980 - BACOVA_01393 0.23 -0.3
Or see this region's nucleotide sequence