Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01240 and BACOVA_01241 are separated by 2 nucleotides BACOVA_01241 and BACOVA_01242 are separated by 16 nucleotides BACOVA_01242 and BACOVA_01243 are separated by 171 nucleotides
BACOVA_01240: BACOVA_01240 - hypothetical protein, at 22,583 to 24,148
_01240
BACOVA_01241: BACOVA_01241 - hypothetical protein, at 24,151 to 24,264
_01241
BACOVA_01242: BACOVA_01242 - transporter, major facilitator family protein, at 24,281 to 25,498
_01242
BACOVA_01243: BACOVA_01243 - glycerophosphodiester phosphodiesterase family protein, at 25,670 to 26,581
_01243
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 23.567 kb on + strand, within BACOVA_01240 at 23.717 kb on + strand, within BACOVA_01240 at 23.718 kb on - strand, within BACOVA_01240 at 23.750 kb on + strand, within BACOVA_01240 at 23.751 kb on - strand, within BACOVA_01240 at 23.751 kb on - strand, within BACOVA_01240 at 23.753 kb on - strand, within BACOVA_01240 at 24.147 kb on - strand at 24.150 kb on + strand at 24.150 kb on + strand at 24.177 kb on + strand, within BACOVA_01241 at 24.181 kb on + strand, within BACOVA_01241 at 24.181 kb on + strand, within BACOVA_01241 at 24.181 kb on + strand, within BACOVA_01241 at 24.267 kb on + strand at 24.267 kb on + strand at 24.270 kb on + strand at 24.271 kb on - strand at 24.272 kb on + strand at 24.367 kb on + strand at 24.369 kb on + strand at 24.437 kb on + strand, within BACOVA_01242 at 24.438 kb on - strand, within BACOVA_01242 at 24.438 kb on - strand, within BACOVA_01242 at 24.447 kb on - strand, within BACOVA_01242 at 24.460 kb on + strand, within BACOVA_01242 at 24.462 kb on + strand, within BACOVA_01242 at 24.463 kb on - strand, within BACOVA_01242 at 24.608 kb on + strand, within BACOVA_01242 at 24.695 kb on + strand, within BACOVA_01242 at 24.696 kb on - strand, within BACOVA_01242 at 24.709 kb on + strand, within BACOVA_01242 at 24.727 kb on + strand, within BACOVA_01242 at 24.728 kb on - strand, within BACOVA_01242 at 24.731 kb on + strand, within BACOVA_01242 at 24.731 kb on + strand, within BACOVA_01242 at 24.732 kb on - strand, within BACOVA_01242 at 24.732 kb on - strand, within BACOVA_01242 at 24.803 kb on + strand, within BACOVA_01242 at 24.829 kb on + strand, within BACOVA_01242 at 24.850 kb on + strand, within BACOVA_01242 at 24.851 kb on - strand, within BACOVA_01242 at 24.851 kb on - strand, within BACOVA_01242 at 24.851 kb on - strand, within BACOVA_01242 at 24.872 kb on + strand, within BACOVA_01242 at 24.897 kb on - strand, within BACOVA_01242 at 24.968 kb on + strand, within BACOVA_01242 at 25.023 kb on - strand, within BACOVA_01242 at 25.023 kb on - strand, within BACOVA_01242 at 25.079 kb on + strand, within BACOVA_01242 at 25.155 kb on + strand, within BACOVA_01242 at 25.155 kb on + strand, within BACOVA_01242 at 25.238 kb on - strand, within BACOVA_01242 at 25.238 kb on - strand, within BACOVA_01242 at 25.276 kb on + strand, within BACOVA_01242 at 25.339 kb on + strand, within BACOVA_01242 at 25.340 kb on - strand, within BACOVA_01242 at 25.449 kb on - strand at 25.449 kb on - strand at 25.491 kb on + strand at 25.491 kb on + strand at 25.491 kb on + strand at 25.492 kb on - strand at 25.492 kb on - strand at 25.492 kb on - strand at 25.494 kb on + strand at 25.495 kb on - strand at 25.495 kb on - strand at 25.495 kb on - strand at 25.495 kb on - strand at 25.495 kb on - strand at 25.642 kb on + strand at 25.671 kb on - strand at 25.706 kb on + strand at 25.707 kb on - strand at 25.791 kb on - strand, within BACOVA_01243 at 25.841 kb on + strand, within BACOVA_01243 at 25.852 kb on + strand, within BACOVA_01243 at 25.852 kb on + strand, within BACOVA_01243 at 25.852 kb on + strand, within BACOVA_01243 at 25.853 kb on - strand, within BACOVA_01243 at 25.900 kb on + strand, within BACOVA_01243 at 25.900 kb on + strand, within BACOVA_01243 at 25.901 kb on - strand, within BACOVA_01243 at 25.906 kb on + strand, within BACOVA_01243 at 25.906 kb on + strand, within BACOVA_01243 at 25.916 kb on + strand, within BACOVA_01243 at 25.916 kb on + strand, within BACOVA_01243 at 25.917 kb on - strand, within BACOVA_01243 at 25.950 kb on + strand, within BACOVA_01243 at 25.963 kb on + strand, within BACOVA_01243 at 25.991 kb on + strand, within BACOVA_01243 at 25.991 kb on + strand, within BACOVA_01243 at 25.997 kb on - strand, within BACOVA_01243 at 26.021 kb on + strand, within BACOVA_01243 at 26.022 kb on - strand, within BACOVA_01243 at 26.111 kb on - strand, within BACOVA_01243 at 26.111 kb on - strand, within BACOVA_01243 at 26.112 kb on + strand, within BACOVA_01243 at 26.112 kb on + strand, within BACOVA_01243 at 26.128 kb on - strand, within BACOVA_01243 at 26.146 kb on + strand, within BACOVA_01243 at 26.146 kb on + strand, within BACOVA_01243 at 26.151 kb on - strand, within BACOVA_01243 at 26.162 kb on - strand, within BACOVA_01243 at 26.194 kb on + strand, within BACOVA_01243 at 26.222 kb on + strand, within BACOVA_01243 at 26.264 kb on - strand, within BACOVA_01243 at 26.264 kb on - strand, within BACOVA_01243 at 26.296 kb on + strand, within BACOVA_01243 at 26.327 kb on + strand, within BACOVA_01243 at 26.327 kb on + strand, within BACOVA_01243 at 26.328 kb on - strand, within BACOVA_01243 at 26.380 kb on + strand, within BACOVA_01243 at 26.381 kb on - strand, within BACOVA_01243 at 26.397 kb on - strand, within BACOVA_01243 at 26.448 kb on - strand, within BACOVA_01243 at 26.462 kb on - strand, within BACOVA_01243
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 23,567 + BACOVA_01240 0.63 -0.1 23,717 + BACOVA_01240 0.72 +1.0 23,718 - BACOVA_01240 0.72 -0.1 23,750 + BACOVA_01240 0.75 +0.1 23,751 - BACOVA_01240 0.75 -1.0 23,751 - BACOVA_01240 0.75 -0.4 23,753 - BACOVA_01240 0.75 +1.0 24,147 - +0.7 24,150 + -0.4 24,150 + -1.6 24,177 + BACOVA_01241 0.23 -0.1 24,181 + BACOVA_01241 0.26 -1.1 24,181 + BACOVA_01241 0.26 -0.7 24,181 + BACOVA_01241 0.26 +0.6 24,267 + -0.1 24,267 + -0.1 24,270 + +0.6 24,271 - -1.4 24,272 + +1.5 24,367 + -1.1 24,369 + +4.8 24,437 + BACOVA_01242 0.13 +0.6 24,438 - BACOVA_01242 0.13 -0.1 24,438 - BACOVA_01242 0.13 -0.7 24,447 - BACOVA_01242 0.14 +0.5 24,460 + BACOVA_01242 0.15 +0.3 24,462 + BACOVA_01242 0.15 -0.4 24,463 - BACOVA_01242 0.15 -1.2 24,608 + BACOVA_01242 0.27 +0.3 24,695 + BACOVA_01242 0.34 -0.9 24,696 - BACOVA_01242 0.34 -2.1 24,709 + BACOVA_01242 0.35 -0.1 24,727 + BACOVA_01242 0.37 +0.5 24,728 - BACOVA_01242 0.37 -0.9 24,731 + BACOVA_01242 0.37 -0.5 24,731 + BACOVA_01242 0.37 +0.9 24,732 - BACOVA_01242 0.37 +0.1 24,732 - BACOVA_01242 0.37 +0.9 24,803 + BACOVA_01242 0.43 -0.1 24,829 + BACOVA_01242 0.45 -1.0 24,850 + BACOVA_01242 0.47 -0.4 24,851 - BACOVA_01242 0.47 +0.9 24,851 - BACOVA_01242 0.47 -0.9 24,851 - BACOVA_01242 0.47 +0.2 24,872 + BACOVA_01242 0.49 -1.5 24,897 - BACOVA_01242 0.51 +0.1 24,968 + BACOVA_01242 0.56 +0.6 25,023 - BACOVA_01242 0.61 -0.8 25,023 - BACOVA_01242 0.61 +0.9 25,079 + BACOVA_01242 0.66 +0.6 25,155 + BACOVA_01242 0.72 +0.7 25,155 + BACOVA_01242 0.72 -0.9 25,238 - BACOVA_01242 0.79 +0.6 25,238 - BACOVA_01242 0.79 -0.7 25,276 + BACOVA_01242 0.82 +0.1 25,339 + BACOVA_01242 0.87 -0.9 25,340 - BACOVA_01242 0.87 +0.5 25,449 - +0.1 25,449 - -0.9 25,491 + -0.4 25,491 + -0.5 25,491 + -1.4 25,492 - -1.0 25,492 - +0.5 25,492 - -1.8 25,494 + -0.5 25,495 - -0.2 25,495 - -0.1 25,495 - +1.1 25,495 - -0.5 25,495 - +0.9 25,642 + -0.9 25,671 - -1.2 25,706 + -0.1 25,707 - -1.5 25,791 - BACOVA_01243 0.13 -0.3 25,841 + BACOVA_01243 0.19 -1.8 25,852 + BACOVA_01243 0.20 -0.5 25,852 + BACOVA_01243 0.20 -1.4 25,852 + BACOVA_01243 0.20 +0.5 25,853 - BACOVA_01243 0.20 -1.2 25,900 + BACOVA_01243 0.25 -1.4 25,900 + BACOVA_01243 0.25 -1.0 25,901 - BACOVA_01243 0.25 -0.1 25,906 + BACOVA_01243 0.26 +0.9 25,906 + BACOVA_01243 0.26 +0.1 25,916 + BACOVA_01243 0.27 +0.1 25,916 + BACOVA_01243 0.27 +0.5 25,917 - BACOVA_01243 0.27 +1.5 25,950 + BACOVA_01243 0.31 -0.5 25,963 + BACOVA_01243 0.32 -1.9 25,991 + BACOVA_01243 0.35 -0.5 25,991 + BACOVA_01243 0.35 +0.1 25,997 - BACOVA_01243 0.36 +0.5 26,021 + BACOVA_01243 0.38 -0.4 26,022 - BACOVA_01243 0.39 -0.0 26,111 - BACOVA_01243 0.48 +2.8 26,111 - BACOVA_01243 0.48 +2.8 26,112 + BACOVA_01243 0.48 +2.5 26,112 + BACOVA_01243 0.48 -0.5 26,128 - BACOVA_01243 0.50 +0.5 26,146 + BACOVA_01243 0.52 -1.7 26,146 + BACOVA_01243 0.52 +0.1 26,151 - BACOVA_01243 0.53 +0.5 26,162 - BACOVA_01243 0.54 -1.4 26,194 + BACOVA_01243 0.57 -0.1 26,222 + BACOVA_01243 0.61 +1.5 26,264 - BACOVA_01243 0.65 -0.7 26,264 - BACOVA_01243 0.65 -1.9 26,296 + BACOVA_01243 0.69 -0.7 26,327 + BACOVA_01243 0.72 +2.5 26,327 + BACOVA_01243 0.72 -1.5 26,328 - BACOVA_01243 0.72 +1.5 26,380 + BACOVA_01243 0.78 +0.6 26,381 - BACOVA_01243 0.78 +0.5 26,397 - BACOVA_01243 0.80 +0.5 26,448 - BACOVA_01243 0.85 -0.4 26,462 - BACOVA_01243 0.87 +0.9
Or see this region's nucleotide sequence