Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01225

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01224 and BACOVA_01225 are separated by 17 nucleotidesBACOVA_01225 and BACOVA_01226 are separated by 19 nucleotidesBACOVA_01226 and BACOVA_01227 are separated by 25 nucleotides BACOVA_01224: BACOVA_01224 - leucine Rich Repeat protein, at 1,454 to 4,108 _01224 BACOVA_01225: BACOVA_01225 - hypothetical protein, at 4,126 to 5,688 _01225 BACOVA_01226: BACOVA_01226 - hypothetical protein, at 5,708 to 6,598 _01226 BACOVA_01227: BACOVA_01227 - SusD family protein, at 6,624 to 8,144 _01227 Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3.126 kb on - strand, within BACOVA_01224at 3.126 kb on - strand, within BACOVA_01224at 3.132 kb on + strand, within BACOVA_01224at 3.137 kb on - strand, within BACOVA_01224at 3.137 kb on - strand, within BACOVA_01224at 3.222 kb on + strand, within BACOVA_01224at 3.235 kb on + strand, within BACOVA_01224at 3.235 kb on + strand, within BACOVA_01224at 3.235 kb on + strand, within BACOVA_01224at 3.235 kb on + strand, within BACOVA_01224at 3.236 kb on - strand, within BACOVA_01224at 3.277 kb on + strand, within BACOVA_01224at 3.341 kb on - strand, within BACOVA_01224at 3.350 kb on + strand, within BACOVA_01224at 3.352 kb on + strand, within BACOVA_01224at 3.376 kb on - strand, within BACOVA_01224at 3.454 kb on + strand, within BACOVA_01224at 3.457 kb on - strand, within BACOVA_01224at 3.516 kb on - strand, within BACOVA_01224at 3.521 kb on - strand, within BACOVA_01224at 3.523 kb on + strand, within BACOVA_01224at 3.523 kb on + strand, within BACOVA_01224at 3.525 kb on + strand, within BACOVA_01224at 3.525 kb on + strand, within BACOVA_01224at 3.526 kb on - strand, within BACOVA_01224at 3.526 kb on - strand, within BACOVA_01224at 3.546 kb on + strand, within BACOVA_01224at 3.635 kb on + strand, within BACOVA_01224at 3.635 kb on + strand, within BACOVA_01224at 3.635 kb on + strand, within BACOVA_01224at 3.645 kb on - strand, within BACOVA_01224at 3.645 kb on - strand, within BACOVA_01224at 3.670 kb on + strand, within BACOVA_01224at 3.671 kb on - strand, within BACOVA_01224at 3.725 kb on - strand, within BACOVA_01224at 3.739 kb on + strand, within BACOVA_01224at 3.742 kb on - strand, within BACOVA_01224at 3.742 kb on - strand, within BACOVA_01224at 3.743 kb on + strand, within BACOVA_01224at 3.743 kb on + strand, within BACOVA_01224at 3.743 kb on + strand, within BACOVA_01224at 3.744 kb on - strand, within BACOVA_01224at 3.769 kb on + strand, within BACOVA_01224at 3.770 kb on - strand, within BACOVA_01224at 3.770 kb on - strand, within BACOVA_01224at 3.815 kb on - strand, within BACOVA_01224at 3.839 kb on + strand, within BACOVA_01224at 3.860 kb on - strandat 3.931 kb on + strandat 3.932 kb on - strandat 3.968 kb on - strandat 4.008 kb on - strandat 4.088 kb on - strandat 4.091 kb on + strandat 4.111 kb on + strandat 4.117 kb on - strandat 4.117 kb on - strandat 4.136 kb on + strandat 4.137 kb on - strandat 4.151 kb on - strandat 4.153 kb on + strandat 4.156 kb on + strandat 4.156 kb on + strandat 4.156 kb on + strandat 4.157 kb on - strandat 4.163 kb on + strandat 4.163 kb on + strandat 4.163 kb on + strandat 4.163 kb on + strandat 4.163 kb on + strandat 4.164 kb on - strandat 4.191 kb on + strandat 4.192 kb on - strandat 4.224 kb on + strandat 4.229 kb on + strandat 4.229 kb on + strandat 4.230 kb on - strandat 4.274 kb on - strandat 4.314 kb on + strand, within BACOVA_01225at 4.318 kb on - strand, within BACOVA_01225at 4.318 kb on - strand, within BACOVA_01225at 4.321 kb on - strand, within BACOVA_01225at 4.332 kb on + strand, within BACOVA_01225at 4.342 kb on - strand, within BACOVA_01225at 4.371 kb on + strand, within BACOVA_01225at 4.371 kb on + strand, within BACOVA_01225at 4.398 kb on - strand, within BACOVA_01225at 4.404 kb on + strand, within BACOVA_01225at 4.404 kb on + strand, within BACOVA_01225at 4.404 kb on + strand, within BACOVA_01225at 4.407 kb on - strand, within BACOVA_01225at 4.419 kb on + strand, within BACOVA_01225at 4.463 kb on + strand, within BACOVA_01225at 4.478 kb on - strand, within BACOVA_01225at 4.499 kb on + strand, within BACOVA_01225at 4.500 kb on - strand, within BACOVA_01225at 4.500 kb on - strand, within BACOVA_01225at 4.500 kb on - strand, within BACOVA_01225at 4.515 kb on + strand, within BACOVA_01225at 4.517 kb on + strand, within BACOVA_01225at 4.545 kb on + strand, within BACOVA_01225at 4.546 kb on - strand, within BACOVA_01225at 4.569 kb on + strand, within BACOVA_01225at 4.584 kb on - strand, within BACOVA_01225at 4.587 kb on + strand, within BACOVA_01225at 4.587 kb on + strand, within BACOVA_01225at 4.588 kb on - strand, within BACOVA_01225at 4.591 kb on - strand, within BACOVA_01225at 4.600 kb on + strand, within BACOVA_01225at 4.655 kb on + strand, within BACOVA_01225at 4.657 kb on + strand, within BACOVA_01225at 4.683 kb on - strand, within BACOVA_01225at 4.776 kb on + strand, within BACOVA_01225at 4.776 kb on + strand, within BACOVA_01225at 4.785 kb on + strand, within BACOVA_01225at 4.833 kb on + strand, within BACOVA_01225at 4.833 kb on + strand, within BACOVA_01225at 4.835 kb on + strand, within BACOVA_01225at 4.836 kb on - strand, within BACOVA_01225at 4.850 kb on + strand, within BACOVA_01225at 4.851 kb on - strand, within BACOVA_01225at 4.851 kb on - strand, within BACOVA_01225at 4.854 kb on + strand, within BACOVA_01225at 4.854 kb on + strand, within BACOVA_01225at 4.855 kb on - strand, within BACOVA_01225at 4.856 kb on + strand, within BACOVA_01225at 4.856 kb on + strand, within BACOVA_01225at 4.882 kb on + strand, within BACOVA_01225at 4.904 kb on + strand, within BACOVA_01225at 4.917 kb on + strand, within BACOVA_01225at 4.917 kb on + strand, within BACOVA_01225at 4.951 kb on - strand, within BACOVA_01225at 4.951 kb on - strand, within BACOVA_01225at 4.969 kb on - strand, within BACOVA_01225at 4.971 kb on + strand, within BACOVA_01225at 4.972 kb on - strand, within BACOVA_01225at 4.980 kb on + strand, within BACOVA_01225at 4.981 kb on - strand, within BACOVA_01225at 5.131 kb on - strand, within BACOVA_01225at 5.188 kb on + strand, within BACOVA_01225at 5.188 kb on + strand, within BACOVA_01225at 5.189 kb on - strand, within BACOVA_01225at 5.238 kb on - strand, within BACOVA_01225at 5.238 kb on - strand, within BACOVA_01225at 5.250 kb on - strand, within BACOVA_01225at 5.272 kb on + strand, within BACOVA_01225at 5.306 kb on + strand, within BACOVA_01225at 5.339 kb on - strand, within BACOVA_01225at 5.412 kb on + strand, within BACOVA_01225at 5.413 kb on - strand, within BACOVA_01225at 5.415 kb on + strand, within BACOVA_01225at 5.487 kb on - strand, within BACOVA_01225at 5.521 kb on - strand, within BACOVA_01225at 5.527 kb on - strand, within BACOVA_01225at 5.569 kb on + strandat 5.620 kb on - strandat 5.674 kb on + strandat 5.674 kb on + strandat 5.692 kb on + strandat 5.704 kb on + strandat 5.704 kb on + strandat 5.709 kb on + strandat 5.709 kb on + strandat 5.775 kb on + strandat 5.776 kb on - strandat 5.776 kb on - strandat 5.779 kb on + strandat 5.779 kb on + strandat 5.805 kb on + strand, within BACOVA_01226at 5.809 kb on + strand, within BACOVA_01226at 5.809 kb on + strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.815 kb on + strand, within BACOVA_01226at 5.817 kb on + strand, within BACOVA_01226at 5.819 kb on + strand, within BACOVA_01226at 5.820 kb on - strand, within BACOVA_01226at 5.840 kb on + strand, within BACOVA_01226at 5.840 kb on + strand, within BACOVA_01226at 5.841 kb on - strand, within BACOVA_01226at 5.845 kb on + strand, within BACOVA_01226at 5.846 kb on - strand, within BACOVA_01226at 5.846 kb on - strand, within BACOVA_01226at 5.847 kb on + strand, within BACOVA_01226at 5.851 kb on - strand, within BACOVA_01226at 5.875 kb on + strand, within BACOVA_01226at 5.875 kb on + strand, within BACOVA_01226at 5.876 kb on - strand, within BACOVA_01226at 5.876 kb on - strand, within BACOVA_01226at 5.926 kb on + strand, within BACOVA_01226at 5.927 kb on - strand, within BACOVA_01226at 5.927 kb on - strand, within BACOVA_01226at 5.930 kb on + strand, within BACOVA_01226at 5.932 kb on + strand, within BACOVA_01226at 5.987 kb on - strand, within BACOVA_01226at 6.023 kb on + strand, within BACOVA_01226at 6.023 kb on + strand, within BACOVA_01226at 6.024 kb on - strand, within BACOVA_01226at 6.035 kb on - strand, within BACOVA_01226at 6.093 kb on + strand, within BACOVA_01226at 6.126 kb on + strand, within BACOVA_01226at 6.127 kb on - strand, within BACOVA_01226at 6.127 kb on - strand, within BACOVA_01226at 6.140 kb on - strand, within BACOVA_01226at 6.142 kb on + strand, within BACOVA_01226at 6.193 kb on - strand, within BACOVA_01226at 6.203 kb on + strand, within BACOVA_01226at 6.270 kb on + strand, within BACOVA_01226at 6.342 kb on + strand, within BACOVA_01226at 6.342 kb on + strand, within BACOVA_01226at 6.364 kb on + strand, within BACOVA_01226at 6.364 kb on + strand, within BACOVA_01226at 6.406 kb on - strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.426 kb on - strand, within BACOVA_01226at 6.469 kb on - strand, within BACOVA_01226at 6.472 kb on + strand, within BACOVA_01226at 6.472 kb on + strand, within BACOVA_01226at 6.476 kb on + strand, within BACOVA_01226at 6.535 kb on + strandat 6.535 kb on + strandat 6.536 kb on - strandat 6.573 kb on - strandat 6.573 kb on - strandat 6.609 kb on + strandat 6.609 kb on + strandat 6.620 kb on + strandat 6.620 kb on + strandat 6.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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3,126 - BACOVA_01224 0.63 -0.4
3,126 - BACOVA_01224 0.63 +0.6
3,132 + BACOVA_01224 0.63 +1.1
3,137 - BACOVA_01224 0.63 +0.9
3,137 - BACOVA_01224 0.63 +0.6
3,222 + BACOVA_01224 0.67 -0.7
3,235 + BACOVA_01224 0.67 +1.7
3,235 + BACOVA_01224 0.67 -1.5
3,235 + BACOVA_01224 0.67 -3.0
3,235 + BACOVA_01224 0.67 -0.6
3,236 - BACOVA_01224 0.67 +0.5
3,277 + BACOVA_01224 0.69 +2.5
3,341 - BACOVA_01224 0.71 -1.2
3,350 + BACOVA_01224 0.71 -1.9
3,352 + BACOVA_01224 0.71 -1.0
3,376 - BACOVA_01224 0.72 +0.3
3,454 + BACOVA_01224 0.75 -0.1
3,457 - BACOVA_01224 0.75 +0.5
3,516 - BACOVA_01224 0.78 -1.4
3,521 - BACOVA_01224 0.78 -1.5
3,523 + BACOVA_01224 0.78 +0.5
3,523 + BACOVA_01224 0.78 -1.2
3,525 + BACOVA_01224 0.78 -1.1
3,525 + BACOVA_01224 0.78 +0.5
3,526 - BACOVA_01224 0.78 +1.7
3,526 - BACOVA_01224 0.78 -1.2
3,546 + BACOVA_01224 0.79 -0.1
3,635 + BACOVA_01224 0.82 +0.9
3,635 + BACOVA_01224 0.82 -0.4
3,635 + BACOVA_01224 0.82 -0.7
3,645 - BACOVA_01224 0.83 -1.6
3,645 - BACOVA_01224 0.83 -1.3
3,670 + BACOVA_01224 0.83 -1.2
3,671 - BACOVA_01224 0.84 +0.6
3,725 - BACOVA_01224 0.86 -0.4
3,739 + BACOVA_01224 0.86 -1.0
3,742 - BACOVA_01224 0.86 -0.1
3,742 - BACOVA_01224 0.86 -0.8
3,743 + BACOVA_01224 0.86 -1.0
3,743 + BACOVA_01224 0.86 -0.7
3,743 + BACOVA_01224 0.86 +0.9
3,744 - BACOVA_01224 0.86 -0.5
3,769 + BACOVA_01224 0.87 -0.1
3,770 - BACOVA_01224 0.87 -0.5
3,770 - BACOVA_01224 0.87 -0.1
3,815 - BACOVA_01224 0.89 +0.2
3,839 + BACOVA_01224 0.90 -1.0
3,860 - -1.3
3,931 + -0.7
3,932 - -0.2
3,968 - +0.9
4,008 - +2.0
4,088 - -0.9
4,091 + +1.4
4,111 + +0.5
4,117 - -0.7
4,117 - -0.5
4,136 + -0.1
4,137 - +0.3
4,151 - +0.1
4,153 + +0.9
4,156 + -0.9
4,156 + -0.2
4,156 + -0.4
4,157 - -1.4
4,163 + -0.7
4,163 + -1.4
4,163 + -0.2
4,163 + -0.5
4,163 + -0.8
4,164 - -0.8
4,191 + -0.9
4,192 - +0.1
4,224 + +0.0
4,229 + -2.1
4,229 + +0.5
4,230 - -2.4
4,274 - +0.5
4,314 + BACOVA_01225 0.12 +1.5
4,318 - BACOVA_01225 0.12 +0.9
4,318 - BACOVA_01225 0.12 +1.5
4,321 - BACOVA_01225 0.12 -0.6
4,332 + BACOVA_01225 0.13 -2.3
4,342 - BACOVA_01225 0.14 +1.5
4,371 + BACOVA_01225 0.16 -0.7
4,371 + BACOVA_01225 0.16 +1.0
4,398 - BACOVA_01225 0.17 -0.3
4,404 + BACOVA_01225 0.18 +0.2
4,404 + BACOVA_01225 0.18 -0.2
4,404 + BACOVA_01225 0.18 -0.0
4,407 - BACOVA_01225 0.18 +0.5
4,419 + BACOVA_01225 0.19 -0.4
4,463 + BACOVA_01225 0.22 +0.1
4,478 - BACOVA_01225 0.23 -0.6
4,499 + BACOVA_01225 0.24 -0.4
4,500 - BACOVA_01225 0.24 +1.2
4,500 - BACOVA_01225 0.24 -1.4
4,500 - BACOVA_01225 0.24 -0.1
4,515 + BACOVA_01225 0.25 -0.6
4,517 + BACOVA_01225 0.25 +1.0
4,545 + BACOVA_01225 0.27 -0.1
4,546 - BACOVA_01225 0.27 +1.5
4,569 + BACOVA_01225 0.28 +0.1
4,584 - BACOVA_01225 0.29 +1.5
4,587 + BACOVA_01225 0.29 -0.2
4,587 + BACOVA_01225 0.29 -1.3
4,588 - BACOVA_01225 0.30 -0.5
4,591 - BACOVA_01225 0.30 -1.5
4,600 + BACOVA_01225 0.30 +0.4
4,655 + BACOVA_01225 0.34 -1.5
4,657 + BACOVA_01225 0.34 -1.1
4,683 - BACOVA_01225 0.36 +1.9
4,776 + BACOVA_01225 0.42 -0.9
4,776 + BACOVA_01225 0.42 -1.1
4,785 + BACOVA_01225 0.42 +0.6
4,833 + BACOVA_01225 0.45 +0.1
4,833 + BACOVA_01225 0.45 +0.1
4,835 + BACOVA_01225 0.45 +0.6
4,836 - BACOVA_01225 0.45 -0.1
4,850 + BACOVA_01225 0.46 -0.4
4,851 - BACOVA_01225 0.46 +0.9
4,851 - BACOVA_01225 0.46 +0.9
4,854 + BACOVA_01225 0.47 +1.7
4,854 + BACOVA_01225 0.47 -0.2
4,855 - BACOVA_01225 0.47 +0.1
4,856 + BACOVA_01225 0.47 -2.0
4,856 + BACOVA_01225 0.47 +0.5
4,882 + BACOVA_01225 0.48 -0.4
4,904 + BACOVA_01225 0.50 +0.1
4,917 + BACOVA_01225 0.51 +1.5
4,917 + BACOVA_01225 0.51 -0.7
4,951 - BACOVA_01225 0.53 -0.4
4,951 - BACOVA_01225 0.53 -0.1
4,969 - BACOVA_01225 0.54 +1.9
4,971 + BACOVA_01225 0.54 -0.1
4,972 - BACOVA_01225 0.54 -0.1
4,980 + BACOVA_01225 0.55 +1.5
4,981 - BACOVA_01225 0.55 -0.4
5,131 - BACOVA_01225 0.64 -0.9
5,188 + BACOVA_01225 0.68 -0.4
5,188 + BACOVA_01225 0.68 -0.7
5,189 - BACOVA_01225 0.68 -0.1
5,238 - BACOVA_01225 0.71 -1.2
5,238 - BACOVA_01225 0.71 -0.4
5,250 - BACOVA_01225 0.72 -0.8
5,272 + BACOVA_01225 0.73 +0.0
5,306 + BACOVA_01225 0.75 +1.9
5,339 - BACOVA_01225 0.78 +1.5
5,412 + BACOVA_01225 0.82 -1.5
5,413 - BACOVA_01225 0.82 -0.9
5,415 + BACOVA_01225 0.82 -0.9
5,487 - BACOVA_01225 0.87 +1.7
5,521 - BACOVA_01225 0.89 +0.5
5,527 - BACOVA_01225 0.90 -0.1
5,569 + +1.5
5,620 - -1.0
5,674 + +0.5
5,674 + -1.1
5,692 + +0.9
5,704 + -1.2
5,704 + -1.8
5,709 + -1.1
5,709 + -1.1
5,775 + +0.6
5,776 - +1.2
5,776 - -0.1
5,779 + +0.5
5,779 + +2.0
5,805 + BACOVA_01226 0.11 -0.6
5,809 + BACOVA_01226 0.11 -0.7
5,809 + BACOVA_01226 0.11 +0.9
5,810 - BACOVA_01226 0.11 +1.5
5,810 - BACOVA_01226 0.11 -0.1
5,810 - BACOVA_01226 0.11 +2.5
5,815 + BACOVA_01226 0.12 -1.0
5,817 + BACOVA_01226 0.12 -0.9
5,819 + BACOVA_01226 0.12 +0.5
5,820 - BACOVA_01226 0.13 -0.9
5,840 + BACOVA_01226 0.15 -1.0
5,840 + BACOVA_01226 0.15 -0.1
5,841 - BACOVA_01226 0.15 -1.5
5,845 + BACOVA_01226 0.15 -0.1
5,846 - BACOVA_01226 0.15 -0.9
5,846 - BACOVA_01226 0.15 -0.5
5,847 + BACOVA_01226 0.16 -1.4
5,851 - BACOVA_01226 0.16 +1.5
5,875 + BACOVA_01226 0.19 +0.6
5,875 + BACOVA_01226 0.19 +0.5
5,876 - BACOVA_01226 0.19 -0.1
5,876 - BACOVA_01226 0.19 +0.9
5,926 + BACOVA_01226 0.24 +0.3
5,927 - BACOVA_01226 0.25 -1.4
5,927 - BACOVA_01226 0.25 +1.1
5,930 + BACOVA_01226 0.25 +0.5
5,932 + BACOVA_01226 0.25 -0.9
5,987 - BACOVA_01226 0.31 +0.5
6,023 + BACOVA_01226 0.35 -0.0
6,023 + BACOVA_01226 0.35 +0.5
6,024 - BACOVA_01226 0.35 -0.1
6,035 - BACOVA_01226 0.37 -0.0
6,093 + BACOVA_01226 0.43 -0.1
6,126 + BACOVA_01226 0.47 -0.5
6,127 - BACOVA_01226 0.47 -0.7
6,127 - BACOVA_01226 0.47 +1.1
6,140 - BACOVA_01226 0.48 -0.5
6,142 + BACOVA_01226 0.49 +0.9
6,193 - BACOVA_01226 0.54 +0.1
6,203 + BACOVA_01226 0.56 -1.0
6,270 + BACOVA_01226 0.63 +0.9
6,342 + BACOVA_01226 0.71 -0.5
6,342 + BACOVA_01226 0.71 -2.4
6,364 + BACOVA_01226 0.74 -0.0
6,364 + BACOVA_01226 0.74 -0.5
6,406 - BACOVA_01226 0.78 -1.2
6,415 + BACOVA_01226 0.79 -0.1
6,415 + BACOVA_01226 0.79 -0.8
6,415 + BACOVA_01226 0.79 -0.0
6,426 - BACOVA_01226 0.81 -0.4
6,469 - BACOVA_01226 0.85 +0.1
6,472 + BACOVA_01226 0.86 +1.6
6,472 + BACOVA_01226 0.86 +1.2
6,476 + BACOVA_01226 0.86 -0.7
6,535 + -0.4
6,535 + +1.9
6,536 - -0.4
6,573 - +0.6
6,573 - -0.4
6,609 + -0.5
6,609 + +0.2
6,620 + -1.5
6,620 + -2.3
6,626 - -0.1

Or see this region's nucleotide sequence