Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00607

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00605 and BACOVA_00606 are separated by 374 nucleotidesBACOVA_00606 and BACOVA_00607 are separated by 14 nucleotidesBACOVA_00607 and BACOVA_00608 are separated by 212 nucleotides BACOVA_00605: BACOVA_00605 - phosphate transport system regulatory protein PhoU, at 41,735 to 42,424 _00605 BACOVA_00606: BACOVA_00606 - riboflavin synthase, alpha subunit, at 42,799 to 43,401 _00606 BACOVA_00607: BACOVA_00607 - nitroreductase family protein, at 43,416 to 43,979 _00607 BACOVA_00608: BACOVA_00608 - WD40-like protein, at 44,192 to 47,476 _00608 Position (kb) 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 42.474 kb on + strandat 42.501 kb on + strandat 42.501 kb on + strandat 42.528 kb on + strandat 42.570 kb on + strandat 42.581 kb on + strandat 42.601 kb on - strandat 42.602 kb on + strandat 42.603 kb on - strandat 42.753 kb on + strandat 43.442 kb on + strandat 43.493 kb on + strand, within BACOVA_00607at 43.691 kb on - strand, within BACOVA_00607at 43.704 kb on - strand, within BACOVA_00607at 43.706 kb on + strand, within BACOVA_00607at 43.706 kb on + strand, within BACOVA_00607at 43.706 kb on + strand, within BACOVA_00607at 43.706 kb on + strand, within BACOVA_00607at 43.707 kb on - strand, within BACOVA_00607at 43.707 kb on - strand, within BACOVA_00607at 43.709 kb on - strand, within BACOVA_00607at 43.709 kb on - strand, within BACOVA_00607at 43.782 kb on - strand, within BACOVA_00607at 43.821 kb on - strand, within BACOVA_00607at 43.866 kb on - strand, within BACOVA_00607at 43.885 kb on + strand, within BACOVA_00607at 43.895 kb on + strand, within BACOVA_00607at 43.895 kb on + strand, within BACOVA_00607at 43.994 kb on + strandat 44.014 kb on - strandat 44.019 kb on + strandat 44.019 kb on + strandat 44.019 kb on + strandat 44.019 kb on + strandat 44.020 kb on - strandat 44.020 kb on - strandat 44.020 kb on - strandat 44.020 kb on - strandat 44.020 kb on - strandat 44.020 kb on - strandat 44.021 kb on + strandat 44.087 kb on + strandat 44.087 kb on + strandat 44.144 kb on + strandat 44.182 kb on - strandat 44.219 kb on + strandat 44.223 kb on + strandat 44.284 kb on - strandat 44.288 kb on + strandat 44.289 kb on - strandat 44.294 kb on - strandat 44.323 kb on - strandat 44.341 kb on + strandat 44.341 kb on + strandat 44.342 kb on - strandat 44.342 kb on - strandat 44.342 kb on - strandat 44.367 kb on - strandat 44.372 kb on - strandat 44.372 kb on - strandat 44.381 kb on + strandat 44.446 kb on + strandat 44.450 kb on + strandat 44.450 kb on + strandat 44.451 kb on - strandat 44.458 kb on + strandat 44.459 kb on - strandat 44.459 kb on - strandat 44.459 kb on - strandat 44.459 kb on - strandat 44.460 kb on + strandat 44.460 kb on + strandat 44.461 kb on - strandat 44.461 kb on - strandat 44.466 kb on + strandat 44.490 kb on + strandat 44.491 kb on - strandat 44.554 kb on + strand, within BACOVA_00608at 44.555 kb on - strand, within BACOVA_00608at 44.555 kb on - strand, within BACOVA_00608at 44.555 kb on - strand, within BACOVA_00608at 44.556 kb on + strand, within BACOVA_00608at 44.557 kb on - strand, within BACOVA_00608at 44.557 kb on - strand, within BACOVA_00608at 44.557 kb on - strand, within BACOVA_00608at 44.584 kb on - strand, within BACOVA_00608at 44.600 kb on + strand, within BACOVA_00608at 44.601 kb on - strand, within BACOVA_00608at 44.648 kb on - strand, within BACOVA_00608at 44.648 kb on - strand, within BACOVA_00608at 44.652 kb on - strand, within BACOVA_00608at 44.688 kb on - strand, within BACOVA_00608at 44.731 kb on + strand, within BACOVA_00608at 44.732 kb on - strand, within BACOVA_00608at 44.738 kb on + strand, within BACOVA_00608at 44.739 kb on - strand, within BACOVA_00608at 44.742 kb on + strand, within BACOVA_00608at 44.743 kb on - strand, within BACOVA_00608at 44.743 kb on - strand, within BACOVA_00608at 44.830 kb on - strand, within BACOVA_00608at 44.888 kb on - strand, within BACOVA_00608at 44.894 kb on + strand, within BACOVA_00608at 44.932 kb on - strand, within BACOVA_00608at 44.932 kb on - strand, within BACOVA_00608

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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42,474 + +1.0
42,501 + -0.4
42,501 + -2.9
42,528 + -2.0
42,570 + +0.8
42,581 + -2.1
42,601 - -1.0
42,602 + -1.2
42,603 - -3.2
42,753 + -0.8
43,442 + -0.1
43,493 + BACOVA_00607 0.14 -1.3
43,691 - BACOVA_00607 0.49 -0.4
43,704 - BACOVA_00607 0.51 -1.3
43,706 + BACOVA_00607 0.51 +0.8
43,706 + BACOVA_00607 0.51 -1.3
43,706 + BACOVA_00607 0.51 -0.0
43,706 + BACOVA_00607 0.51 -1.0
43,707 - BACOVA_00607 0.52 -1.7
43,707 - BACOVA_00607 0.52 +1.8
43,709 - BACOVA_00607 0.52 -1.1
43,709 - BACOVA_00607 0.52 +2.4
43,782 - BACOVA_00607 0.65 -0.7
43,821 - BACOVA_00607 0.72 -1.2
43,866 - BACOVA_00607 0.80 +1.8
43,885 + BACOVA_00607 0.83 +0.8
43,895 + BACOVA_00607 0.85 -0.4
43,895 + BACOVA_00607 0.85 +1.0
43,994 + -0.2
44,014 - +0.8
44,019 + +1.0
44,019 + -0.0
44,019 + -0.7
44,019 + -0.3
44,020 - -0.6
44,020 - -1.3
44,020 - -1.3
44,020 - +2.4
44,020 - +0.3
44,020 - -2.0
44,021 + -1.2
44,087 + +0.8
44,087 + +0.2
44,144 + -1.0
44,182 - -0.8
44,219 + -0.4
44,223 + -1.0
44,284 - -0.6
44,288 + +0.0
44,289 - -0.4
44,294 - -2.1
44,323 - -1.3
44,341 + -0.6
44,341 + -0.2
44,342 - -1.0
44,342 - -0.4
44,342 - -1.8
44,367 - -0.1
44,372 - -1.8
44,372 - +0.4
44,381 + -0.8
44,446 + -0.7
44,450 + -2.3
44,450 + -1.1
44,451 - +0.7
44,458 + +0.3
44,459 - -0.6
44,459 - -1.1
44,459 - -2.0
44,459 - +0.3
44,460 + -0.3
44,460 + +0.6
44,461 - -0.2
44,461 - -0.4
44,466 + +0.0
44,490 + +2.4
44,491 - +0.0
44,554 + BACOVA_00608 0.11 +0.5
44,555 - BACOVA_00608 0.11 +0.3
44,555 - BACOVA_00608 0.11 -0.4
44,555 - BACOVA_00608 0.11 +0.4
44,556 + BACOVA_00608 0.11 -0.4
44,557 - BACOVA_00608 0.11 +0.5
44,557 - BACOVA_00608 0.11 -2.9
44,557 - BACOVA_00608 0.11 -0.2
44,584 - BACOVA_00608 0.12 -1.0
44,600 + BACOVA_00608 0.12 -0.4
44,601 - BACOVA_00608 0.12 +1.2
44,648 - BACOVA_00608 0.14 -0.8
44,648 - BACOVA_00608 0.14 -0.5
44,652 - BACOVA_00608 0.14 +0.3
44,688 - BACOVA_00608 0.15 -0.1
44,731 + BACOVA_00608 0.16 -2.2
44,732 - BACOVA_00608 0.16 -0.9
44,738 + BACOVA_00608 0.17 +0.4
44,739 - BACOVA_00608 0.17 +0.4
44,742 + BACOVA_00608 0.17 -1.7
44,743 - BACOVA_00608 0.17 -1.0
44,743 - BACOVA_00608 0.17 -1.5
44,830 - BACOVA_00608 0.19 -0.4
44,888 - BACOVA_00608 0.21 -1.7
44,894 + BACOVA_00608 0.21 +0.5
44,932 - BACOVA_00608 0.23 -0.2
44,932 - BACOVA_00608 0.23 +1.4

Or see this region's nucleotide sequence