Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00277

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00276 and BACOVA_00277 are separated by 22 nucleotidesBACOVA_00277 and BACOVA_00278 are separated by 3 nucleotides BACOVA_00276: BACOVA_00276 - hypothetical protein, at 530,890 to 532,443 _00276 BACOVA_00277: BACOVA_00277 - PKD domain protein, at 532,466 to 534,037 _00277 BACOVA_00278: BACOVA_00278 - hypothetical protein, at 534,041 to 535,711 _00278 Position (kb) 532 533 534 535Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 531.607 kb on + strand, within BACOVA_00276at 531.607 kb on + strand, within BACOVA_00276at 531.608 kb on - strand, within BACOVA_00276at 531.608 kb on - strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.643 kb on + strand, within BACOVA_00276at 531.644 kb on - strand, within BACOVA_00276at 531.739 kb on + strand, within BACOVA_00276at 531.740 kb on - strand, within BACOVA_00276at 531.744 kb on + strand, within BACOVA_00276at 531.804 kb on + strand, within BACOVA_00276at 531.807 kb on - strand, within BACOVA_00276at 531.840 kb on - strand, within BACOVA_00276at 531.840 kb on - strand, within BACOVA_00276at 531.864 kb on - strand, within BACOVA_00276at 532.051 kb on + strand, within BACOVA_00276at 532.056 kb on + strand, within BACOVA_00276at 532.056 kb on + strand, within BACOVA_00276at 532.130 kb on + strand, within BACOVA_00276at 532.130 kb on + strand, within BACOVA_00276at 532.150 kb on + strand, within BACOVA_00276at 532.206 kb on - strand, within BACOVA_00276at 532.301 kb on + strandat 532.302 kb on - strandat 532.318 kb on + strandat 532.368 kb on + strandat 532.369 kb on - strandat 532.434 kb on - strandat 532.443 kb on + strandat 532.463 kb on + strandat 532.527 kb on + strandat 532.549 kb on + strandat 532.550 kb on - strandat 532.550 kb on - strandat 532.550 kb on - strandat 532.553 kb on + strandat 532.553 kb on + strandat 532.593 kb on + strandat 532.595 kb on + strandat 532.595 kb on + strandat 532.596 kb on - strandat 532.596 kb on - strandat 532.596 kb on - strandat 532.636 kb on + strand, within BACOVA_00277at 532.686 kb on + strand, within BACOVA_00277at 532.718 kb on - strand, within BACOVA_00277at 532.720 kb on - strand, within BACOVA_00277at 532.769 kb on - strand, within BACOVA_00277at 532.773 kb on + strand, within BACOVA_00277at 532.784 kb on + strand, within BACOVA_00277at 532.785 kb on - strand, within BACOVA_00277at 532.917 kb on + strand, within BACOVA_00277at 532.917 kb on + strand, within BACOVA_00277at 532.953 kb on - strand, within BACOVA_00277at 533.038 kb on + strand, within BACOVA_00277at 533.038 kb on + strand, within BACOVA_00277at 533.091 kb on + strand, within BACOVA_00277at 533.100 kb on + strand, within BACOVA_00277at 533.107 kb on + strand, within BACOVA_00277at 533.171 kb on + strand, within BACOVA_00277at 533.172 kb on - strand, within BACOVA_00277at 533.177 kb on + strand, within BACOVA_00277at 533.216 kb on + strand, within BACOVA_00277at 533.217 kb on - strand, within BACOVA_00277at 533.217 kb on - strand, within BACOVA_00277at 533.252 kb on - strand, within BACOVA_00277at 533.255 kb on - strand, within BACOVA_00277at 533.287 kb on - strand, within BACOVA_00277at 533.287 kb on - strand, within BACOVA_00277at 533.323 kb on + strand, within BACOVA_00277at 533.326 kb on + strand, within BACOVA_00277at 533.406 kb on + strand, within BACOVA_00277at 533.406 kb on + strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.442 kb on + strand, within BACOVA_00277at 533.445 kb on - strand, within BACOVA_00277at 533.532 kb on + strand, within BACOVA_00277at 533.532 kb on + strand, within BACOVA_00277at 533.533 kb on + strand, within BACOVA_00277at 533.533 kb on - strand, within BACOVA_00277at 533.586 kb on + strand, within BACOVA_00277at 533.596 kb on + strand, within BACOVA_00277at 533.635 kb on + strand, within BACOVA_00277at 533.635 kb on + strand, within BACOVA_00277at 533.636 kb on - strand, within BACOVA_00277at 533.664 kb on - strand, within BACOVA_00277at 533.695 kb on + strand, within BACOVA_00277at 533.843 kb on + strand, within BACOVA_00277at 533.882 kb on - strandat 533.912 kb on - strandat 533.957 kb on + strandat 533.958 kb on - strandat 533.962 kb on + strandat 533.963 kb on - strandat 534.006 kb on - strandat 534.012 kb on + strandat 534.017 kb on + strandat 534.028 kb on + strandat 534.029 kb on - strandat 534.031 kb on + strandat 534.052 kb on + strandat 534.097 kb on - strandat 534.162 kb on + strandat 534.250 kb on + strand, within BACOVA_00278at 534.406 kb on + strand, within BACOVA_00278at 534.406 kb on + strand, within BACOVA_00278at 534.406 kb on + strand, within BACOVA_00278at 534.407 kb on - strand, within BACOVA_00278at 534.496 kb on - strand, within BACOVA_00278at 534.510 kb on - strand, within BACOVA_00278at 534.512 kb on + strand, within BACOVA_00278at 534.574 kb on + strand, within BACOVA_00278at 534.575 kb on - strand, within BACOVA_00278at 534.575 kb on - strand, within BACOVA_00278at 534.631 kb on + strand, within BACOVA_00278at 534.638 kb on + strand, within BACOVA_00278at 534.639 kb on - strand, within BACOVA_00278at 534.724 kb on + strand, within BACOVA_00278at 534.754 kb on + strand, within BACOVA_00278at 534.758 kb on + strand, within BACOVA_00278at 534.770 kb on + strand, within BACOVA_00278at 534.882 kb on + strand, within BACOVA_00278at 534.934 kb on + strand, within BACOVA_00278at 534.934 kb on + strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.939 kb on + strand, within BACOVA_00278at 534.939 kb on + strand, within BACOVA_00278at 534.969 kb on + strand, within BACOVA_00278at 534.971 kb on + strand, within BACOVA_00278

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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531,607 + BACOVA_00276 0.46 -0.0
531,607 + BACOVA_00276 0.46 +1.3
531,608 - BACOVA_00276 0.46 -0.5
531,608 - BACOVA_00276 0.46 -0.3
531,609 + BACOVA_00276 0.46 -0.3
531,609 + BACOVA_00276 0.46 +1.3
531,609 + BACOVA_00276 0.46 -0.9
531,643 + BACOVA_00276 0.48 +0.9
531,644 - BACOVA_00276 0.49 +0.5
531,739 + BACOVA_00276 0.55 -0.5
531,740 - BACOVA_00276 0.55 -0.9
531,744 + BACOVA_00276 0.55 -0.9
531,804 + BACOVA_00276 0.59 -0.9
531,807 - BACOVA_00276 0.59 +1.9
531,840 - BACOVA_00276 0.61 +0.7
531,840 - BACOVA_00276 0.61 -1.2
531,864 - BACOVA_00276 0.63 +1.7
532,051 + BACOVA_00276 0.75 +0.3
532,056 + BACOVA_00276 0.75 -0.9
532,056 + BACOVA_00276 0.75 +2.3
532,130 + BACOVA_00276 0.80 +1.1
532,130 + BACOVA_00276 0.80 +0.7
532,150 + BACOVA_00276 0.81 -0.2
532,206 - BACOVA_00276 0.85 +1.7
532,301 + -1.6
532,302 - -1.6
532,318 + +1.3
532,368 + +0.1
532,369 - -2.7
532,434 - +0.7
532,443 + +0.7
532,463 + -0.3
532,527 + -1.6
532,549 + -1.0
532,550 - +2.3
532,550 - -0.3
532,550 - -1.0
532,553 + -1.3
532,553 + -0.5
532,593 + -1.0
532,595 + -0.1
532,595 + +0.1
532,596 - +1.3
532,596 - +0.7
532,596 - +1.0
532,636 + BACOVA_00277 0.11 +2.3
532,686 + BACOVA_00277 0.14 -0.7
532,718 - BACOVA_00277 0.16 +0.7
532,720 - BACOVA_00277 0.16 -0.0
532,769 - BACOVA_00277 0.19 -0.5
532,773 + BACOVA_00277 0.20 -0.3
532,784 + BACOVA_00277 0.20 -1.2
532,785 - BACOVA_00277 0.20 +1.3
532,917 + BACOVA_00277 0.29 +0.1
532,917 + BACOVA_00277 0.29 -0.7
532,953 - BACOVA_00277 0.31 -1.2
533,038 + BACOVA_00277 0.36 +1.3
533,038 + BACOVA_00277 0.36 -1.6
533,091 + BACOVA_00277 0.40 +0.3
533,100 + BACOVA_00277 0.40 +1.0
533,107 + BACOVA_00277 0.41 +0.0
533,171 + BACOVA_00277 0.45 +0.3
533,172 - BACOVA_00277 0.45 +0.3
533,177 + BACOVA_00277 0.45 -1.2
533,216 + BACOVA_00277 0.48 -0.0
533,217 - BACOVA_00277 0.48 -0.5
533,217 - BACOVA_00277 0.48 +1.9
533,252 - BACOVA_00277 0.50 -0.7
533,255 - BACOVA_00277 0.50 -0.0
533,287 - BACOVA_00277 0.52 -0.3
533,287 - BACOVA_00277 0.52 +5.4
533,323 + BACOVA_00277 0.55 -0.0
533,326 + BACOVA_00277 0.55 -0.8
533,406 + BACOVA_00277 0.60 +0.3
533,406 + BACOVA_00277 0.60 -0.7
533,407 - BACOVA_00277 0.60 -0.6
533,407 - BACOVA_00277 0.60 +1.7
533,407 - BACOVA_00277 0.60 -0.0
533,442 + BACOVA_00277 0.62 -0.9
533,445 - BACOVA_00277 0.62 -0.7
533,532 + BACOVA_00277 0.68 +0.3
533,532 + BACOVA_00277 0.68 -0.0
533,533 + BACOVA_00277 0.68 +0.3
533,533 - BACOVA_00277 0.68 +0.3
533,586 + BACOVA_00277 0.71 +2.3
533,596 + BACOVA_00277 0.72 +1.5
533,635 + BACOVA_00277 0.74 +2.3
533,635 + BACOVA_00277 0.74 +0.7
533,636 - BACOVA_00277 0.74 +2.7
533,664 - BACOVA_00277 0.76 +0.9
533,695 + BACOVA_00277 0.78 -0.3
533,843 + BACOVA_00277 0.88 +0.2
533,882 - +0.6
533,912 - +0.4
533,957 + +0.8
533,958 - +1.5
533,962 + -1.0
533,963 - -0.3
534,006 - -0.5
534,012 + -2.7
534,017 + -0.5
534,028 + -1.2
534,029 - -1.0
534,031 + +0.1
534,052 + -0.0
534,097 - +1.3
534,162 + -0.3
534,250 + BACOVA_00278 0.13 -0.3
534,406 + BACOVA_00278 0.22 +3.9
534,406 + BACOVA_00278 0.22 -0.5
534,406 + BACOVA_00278 0.22 +1.5
534,407 - BACOVA_00278 0.22 -0.3
534,496 - BACOVA_00278 0.27 +1.7
534,510 - BACOVA_00278 0.28 +0.5
534,512 + BACOVA_00278 0.28 +0.3
534,574 + BACOVA_00278 0.32 +0.7
534,575 - BACOVA_00278 0.32 +1.3
534,575 - BACOVA_00278 0.32 -0.7
534,631 + BACOVA_00278 0.35 -0.3
534,638 + BACOVA_00278 0.36 -1.3
534,639 - BACOVA_00278 0.36 +1.7
534,724 + BACOVA_00278 0.41 -0.2
534,754 + BACOVA_00278 0.43 -0.7
534,758 + BACOVA_00278 0.43 -0.5
534,770 + BACOVA_00278 0.44 +0.0
534,882 + BACOVA_00278 0.50 +0.5
534,934 + BACOVA_00278 0.53 +1.1
534,934 + BACOVA_00278 0.53 -1.2
534,938 - BACOVA_00278 0.54 +1.3
534,938 - BACOVA_00278 0.54 +1.3
534,938 - BACOVA_00278 0.54 +0.7
534,939 + BACOVA_00278 0.54 +0.3
534,939 + BACOVA_00278 0.54 -0.9
534,969 + BACOVA_00278 0.56 -0.8
534,971 + BACOVA_00278 0.56 -0.7

Or see this region's nucleotide sequence