Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00180

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00179 and BACOVA_00180 overlap by 4 nucleotidesBACOVA_00180 and BACOVA_00181 are separated by 145 nucleotides BACOVA_00179: BACOVA_00179 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 505,870 to 507,237 _00179 BACOVA_00180: BACOVA_00180 - response regulator receiver domain protein, at 507,234 to 507,920 _00180 BACOVA_00181: BACOVA_00181 - glycosyl hydrolase family 2, sugar binding domain protein, at 508,066 to 510,915 _00181 Position (kb) 507 508Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 506.242 kb on + strand, within BACOVA_00179at 506.243 kb on - strand, within BACOVA_00179at 506.243 kb on - strand, within BACOVA_00179at 506.243 kb on - strand, within BACOVA_00179at 506.245 kb on + strand, within BACOVA_00179at 506.245 kb on + strand, within BACOVA_00179at 506.246 kb on - strand, within BACOVA_00179at 506.275 kb on + strand, within BACOVA_00179at 506.275 kb on + strand, within BACOVA_00179at 506.276 kb on - strand, within BACOVA_00179at 506.424 kb on + strand, within BACOVA_00179at 506.428 kb on + strand, within BACOVA_00179at 506.428 kb on + strand, within BACOVA_00179at 506.428 kb on + strand, within BACOVA_00179at 506.428 kb on + strand, within BACOVA_00179at 506.502 kb on + strand, within BACOVA_00179at 506.502 kb on + strand, within BACOVA_00179at 506.506 kb on + strand, within BACOVA_00179at 506.518 kb on + strand, within BACOVA_00179at 506.519 kb on - strand, within BACOVA_00179at 506.524 kb on - strand, within BACOVA_00179at 506.637 kb on + strand, within BACOVA_00179at 506.682 kb on + strand, within BACOVA_00179at 506.683 kb on - strand, within BACOVA_00179at 506.683 kb on - strand, within BACOVA_00179at 506.683 kb on - strand, within BACOVA_00179at 506.683 kb on - strand, within BACOVA_00179at 506.683 kb on - strand, within BACOVA_00179at 506.717 kb on + strand, within BACOVA_00179at 506.718 kb on - strand, within BACOVA_00179at 506.811 kb on - strand, within BACOVA_00179at 506.866 kb on - strand, within BACOVA_00179at 506.882 kb on - strand, within BACOVA_00179at 506.882 kb on - strand, within BACOVA_00179at 506.921 kb on - strand, within BACOVA_00179at 506.969 kb on + strand, within BACOVA_00179at 506.992 kb on - strand, within BACOVA_00179at 506.992 kb on - strand, within BACOVA_00179at 507.043 kb on - strand, within BACOVA_00179at 507.118 kb on - strandat 507.156 kb on - strandat 507.159 kb on - strandat 507.175 kb on + strandat 507.195 kb on + strandat 507.196 kb on - strandat 507.207 kb on - strandat 507.212 kb on - strandat 507.252 kb on + strandat 507.307 kb on - strand, within BACOVA_00180at 507.331 kb on + strand, within BACOVA_00180at 507.332 kb on - strand, within BACOVA_00180at 507.332 kb on - strand, within BACOVA_00180at 507.332 kb on - strand, within BACOVA_00180at 507.334 kb on - strand, within BACOVA_00180at 507.334 kb on - strand, within BACOVA_00180at 507.339 kb on + strand, within BACOVA_00180at 507.339 kb on + strand, within BACOVA_00180at 507.428 kb on + strand, within BACOVA_00180at 507.429 kb on - strand, within BACOVA_00180at 507.430 kb on + strand, within BACOVA_00180at 507.431 kb on - strand, within BACOVA_00180at 507.431 kb on - strand, within BACOVA_00180at 507.431 kb on - strand, within BACOVA_00180at 507.432 kb on + strand, within BACOVA_00180at 507.433 kb on - strand, within BACOVA_00180at 507.433 kb on - strand, within BACOVA_00180at 507.433 kb on - strand, within BACOVA_00180at 507.438 kb on + strand, within BACOVA_00180at 507.438 kb on + strand, within BACOVA_00180at 507.439 kb on - strand, within BACOVA_00180at 507.446 kb on - strand, within BACOVA_00180at 507.465 kb on + strand, within BACOVA_00180at 507.471 kb on + strand, within BACOVA_00180at 507.487 kb on - strand, within BACOVA_00180at 507.510 kb on - strand, within BACOVA_00180at 507.625 kb on + strand, within BACOVA_00180at 507.625 kb on + strand, within BACOVA_00180at 507.626 kb on - strand, within BACOVA_00180at 507.626 kb on - strand, within BACOVA_00180at 507.675 kb on + strand, within BACOVA_00180at 507.695 kb on + strand, within BACOVA_00180at 507.771 kb on + strand, within BACOVA_00180at 507.771 kb on + strand, within BACOVA_00180at 507.845 kb on - strand, within BACOVA_00180at 507.903 kb on - strandat 507.903 kb on - strandat 507.903 kb on - strandat 507.906 kb on + strandat 507.907 kb on - strandat 507.917 kb on - strandat 507.917 kb on - strandat 507.917 kb on - strandat 507.920 kb on + strandat 507.921 kb on - strandat 507.948 kb on + strandat 507.971 kb on + strandat 507.982 kb on + strandat 507.982 kb on + strandat 507.982 kb on + strandat 507.983 kb on - strandat 508.031 kb on - strandat 508.034 kb on + strandat 508.048 kb on + strandat 508.054 kb on + strandat 508.055 kb on - strandat 508.068 kb on - strandat 508.072 kb on - strandat 508.162 kb on - strandat 508.162 kb on - strandat 508.162 kb on - strandat 508.162 kb on - strandat 508.166 kb on - strandat 508.250 kb on - strandat 508.256 kb on - strandat 508.256 kb on - strandat 508.259 kb on + strandat 508.260 kb on - strandat 508.260 kb on - strandat 508.290 kb on + strandat 508.311 kb on + strandat 508.356 kb on - strand, within BACOVA_00181at 508.519 kb on + strand, within BACOVA_00181at 508.539 kb on - strand, within BACOVA_00181at 508.545 kb on - strand, within BACOVA_00181at 508.572 kb on + strand, within BACOVA_00181at 508.610 kb on + strand, within BACOVA_00181at 508.666 kb on + strand, within BACOVA_00181at 508.667 kb on - strand, within BACOVA_00181at 508.691 kb on + strand, within BACOVA_00181at 508.692 kb on - strand, within BACOVA_00181at 508.733 kb on + strand, within BACOVA_00181at 508.733 kb on + strand, within BACOVA_00181at 508.734 kb on - strand, within BACOVA_00181at 508.803 kb on + strand, within BACOVA_00181at 508.803 kb on + strand, within BACOVA_00181at 508.814 kb on - strand, within BACOVA_00181at 508.814 kb on - strand, within BACOVA_00181at 508.860 kb on + strand, within BACOVA_00181at 508.860 kb on + strand, within BACOVA_00181at 508.903 kb on - strand, within BACOVA_00181at 508.904 kb on + strand, within BACOVA_00181at 508.904 kb on + strand, within BACOVA_00181at 508.905 kb on - strand, within BACOVA_00181at 508.905 kb on - strand, within BACOVA_00181at 508.908 kb on + strand, within BACOVA_00181at 508.909 kb on - strand, within BACOVA_00181

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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506,242 + BACOVA_00179 0.27 -0.3
506,243 - BACOVA_00179 0.27 +2.1
506,243 - BACOVA_00179 0.27 +0.9
506,243 - BACOVA_00179 0.27 -0.0
506,245 + BACOVA_00179 0.27 -1.1
506,245 + BACOVA_00179 0.27 +0.3
506,246 - BACOVA_00179 0.27 -0.2
506,275 + BACOVA_00179 0.30 -1.2
506,275 + BACOVA_00179 0.30 +0.7
506,276 - BACOVA_00179 0.30 -0.4
506,424 + BACOVA_00179 0.40 +1.3
506,428 + BACOVA_00179 0.41 -1.5
506,428 + BACOVA_00179 0.41 -0.5
506,428 + BACOVA_00179 0.41 -0.6
506,428 + BACOVA_00179 0.41 +0.3
506,502 + BACOVA_00179 0.46 -1.0
506,502 + BACOVA_00179 0.46 -0.8
506,506 + BACOVA_00179 0.46 +1.3
506,518 + BACOVA_00179 0.47 -1.5
506,519 - BACOVA_00179 0.47 +0.3
506,524 - BACOVA_00179 0.48 -0.3
506,637 + BACOVA_00179 0.56 +0.5
506,682 + BACOVA_00179 0.59 -0.3
506,683 - BACOVA_00179 0.59 +0.6
506,683 - BACOVA_00179 0.59 +0.3
506,683 - BACOVA_00179 0.59 -2.2
506,683 - BACOVA_00179 0.59 -0.3
506,683 - BACOVA_00179 0.59 +1.3
506,717 + BACOVA_00179 0.62 +0.9
506,718 - BACOVA_00179 0.62 -1.3
506,811 - BACOVA_00179 0.69 +1.7
506,866 - BACOVA_00179 0.73 +1.3
506,882 - BACOVA_00179 0.74 +0.1
506,882 - BACOVA_00179 0.74 +0.1
506,921 - BACOVA_00179 0.77 +1.3
506,969 + BACOVA_00179 0.80 -1.3
506,992 - BACOVA_00179 0.82 +0.7
506,992 - BACOVA_00179 0.82 -0.5
507,043 - BACOVA_00179 0.86 -1.2
507,118 - -0.8
507,156 - -0.5
507,159 - +1.0
507,175 + +0.7
507,195 + -0.9
507,196 - +1.7
507,207 - -1.5
507,212 - +0.7
507,252 + +0.4
507,307 - BACOVA_00180 0.11 -0.1
507,331 + BACOVA_00180 0.14 +1.7
507,332 - BACOVA_00180 0.14 +0.3
507,332 - BACOVA_00180 0.14 -0.1
507,332 - BACOVA_00180 0.14 -2.2
507,334 - BACOVA_00180 0.15 +0.7
507,334 - BACOVA_00180 0.15 +0.3
507,339 + BACOVA_00180 0.15 -1.6
507,339 + BACOVA_00180 0.15 -1.9
507,428 + BACOVA_00180 0.28 +0.8
507,429 - BACOVA_00180 0.28 -0.9
507,430 + BACOVA_00180 0.29 +1.3
507,431 - BACOVA_00180 0.29 +0.7
507,431 - BACOVA_00180 0.29 -1.5
507,431 - BACOVA_00180 0.29 +1.1
507,432 + BACOVA_00180 0.29 +0.7
507,433 - BACOVA_00180 0.29 -0.5
507,433 - BACOVA_00180 0.29 -0.7
507,433 - BACOVA_00180 0.29 -0.3
507,438 + BACOVA_00180 0.30 -0.5
507,438 + BACOVA_00180 0.30 -0.2
507,439 - BACOVA_00180 0.30 -0.9
507,446 - BACOVA_00180 0.31 +1.5
507,465 + BACOVA_00180 0.34 -0.7
507,471 + BACOVA_00180 0.34 -0.7
507,487 - BACOVA_00180 0.37 +0.1
507,510 - BACOVA_00180 0.40 +0.5
507,625 + BACOVA_00180 0.57 +0.7
507,625 + BACOVA_00180 0.57 +1.3
507,626 - BACOVA_00180 0.57 +0.1
507,626 - BACOVA_00180 0.57 +0.3
507,675 + BACOVA_00180 0.64 +5.2
507,695 + BACOVA_00180 0.67 +0.7
507,771 + BACOVA_00180 0.78 -0.3
507,771 + BACOVA_00180 0.78 -1.4
507,845 - BACOVA_00180 0.89 +0.2
507,903 - +0.3
507,903 - +0.3
507,903 - +0.3
507,906 + -1.3
507,907 - -1.3
507,917 - -0.0
507,917 - -0.2
507,917 - +0.3
507,920 + -0.3
507,921 - +8.7
507,948 + -2.3
507,971 + +1.5
507,982 + -0.9
507,982 + -1.0
507,982 + +1.0
507,983 - -2.3
508,031 - +0.5
508,034 + -1.6
508,048 + +0.3
508,054 + -0.3
508,055 - -0.3
508,068 - -1.0
508,072 - -0.5
508,162 - -0.5
508,162 - +1.7
508,162 - -0.7
508,162 - +1.0
508,166 - +0.4
508,250 - +2.9
508,256 - +1.3
508,256 - -0.5
508,259 + +0.3
508,260 - -0.0
508,260 - +1.3
508,290 + -1.1
508,311 + -2.2
508,356 - BACOVA_00181 0.10 -2.4
508,519 + BACOVA_00181 0.16 -0.5
508,539 - BACOVA_00181 0.17 -0.0
508,545 - BACOVA_00181 0.17 +0.4
508,572 + BACOVA_00181 0.18 +0.7
508,610 + BACOVA_00181 0.19 -0.3
508,666 + BACOVA_00181 0.21 -1.4
508,667 - BACOVA_00181 0.21 -0.7
508,691 + BACOVA_00181 0.22 +1.1
508,692 - BACOVA_00181 0.22 +0.2
508,733 + BACOVA_00181 0.23 -0.2
508,733 + BACOVA_00181 0.23 +0.7
508,734 - BACOVA_00181 0.23 +3.0
508,803 + BACOVA_00181 0.26 +1.3
508,803 + BACOVA_00181 0.26 -1.7
508,814 - BACOVA_00181 0.26 +0.7
508,814 - BACOVA_00181 0.26 -0.2
508,860 + BACOVA_00181 0.28 -1.0
508,860 + BACOVA_00181 0.28 +1.7
508,903 - BACOVA_00181 0.29 -0.9
508,904 + BACOVA_00181 0.29 +1.3
508,904 + BACOVA_00181 0.29 -0.9
508,905 - BACOVA_00181 0.29 -1.3
508,905 - BACOVA_00181 0.29 -0.0
508,908 + BACOVA_00181 0.30 -0.7
508,909 - BACOVA_00181 0.30 +1.9

Or see this region's nucleotide sequence