Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05151 and BACOVA_05152 are separated by 34 nucleotides BACOVA_05152 and BACOVA_05153 are separated by 116 nucleotides BACOVA_05153 and BACOVA_05154 are separated by 139 nucleotides BACOVA_05154 and BACOVA_05155 are separated by 130 nucleotides
BACOVA_05151: BACOVA_05151 - RNA polymerase sigma-70 factor, at 632,308 to 632,862
_05151
BACOVA_05152: BACOVA_05152 - cyclic nucleotide-binding domain protein, at 632,897 to 633,598
_05152
BACOVA_05153: BACOVA_05153 - glutamate--ammonia ligase, catalytic domain protein, at 633,715 to 635,904
_05153
BACOVA_05154: BACOVA_05154 - hypothetical protein, at 636,044 to 636,517
_05154
BACOVA_05155: BACOVA_05155 - hypothetical protein, at 636,648 to 636,818
_05155
Position (kb) 633
634
635
636 Strain fitness (log2 ratio) -2
-1
0
1
2 at 632.750 kb on + strand, within BACOVA_05151 at 632.776 kb on - strand, within BACOVA_05151 at 632.776 kb on - strand, within BACOVA_05151 at 632.780 kb on + strand, within BACOVA_05151 at 632.780 kb on + strand, within BACOVA_05151 at 632.781 kb on - strand, within BACOVA_05151 at 632.783 kb on + strand, within BACOVA_05151 at 632.784 kb on - strand, within BACOVA_05151 at 632.784 kb on - strand, within BACOVA_05151 at 632.794 kb on + strand, within BACOVA_05151 at 632.795 kb on - strand, within BACOVA_05151 at 632.828 kb on - strand at 632.840 kb on - strand at 632.850 kb on + strand at 632.854 kb on + strand at 632.854 kb on + strand at 632.854 kb on + strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.867 kb on + strand at 632.898 kb on + strand at 633.226 kb on + strand, within BACOVA_05152 at 633.260 kb on - strand, within BACOVA_05152 at 633.483 kb on + strand, within BACOVA_05152 at 633.492 kb on - strand, within BACOVA_05152 at 633.542 kb on + strand at 633.619 kb on - strand at 633.667 kb on - strand at 633.738 kb on + strand at 633.878 kb on - strand at 633.911 kb on - strand at 634.119 kb on - strand, within BACOVA_05153 at 634.183 kb on - strand, within BACOVA_05153 at 634.209 kb on + strand, within BACOVA_05153 at 634.210 kb on - strand, within BACOVA_05153 at 634.394 kb on - strand, within BACOVA_05153 at 634.765 kb on - strand, within BACOVA_05153 at 634.802 kb on + strand, within BACOVA_05153 at 635.227 kb on - strand, within BACOVA_05153 at 635.230 kb on + strand, within BACOVA_05153 at 635.243 kb on - strand, within BACOVA_05153 at 635.277 kb on + strand, within BACOVA_05153 at 635.282 kb on - strand, within BACOVA_05153 at 635.389 kb on - strand, within BACOVA_05153 at 635.431 kb on + strand, within BACOVA_05153 at 635.466 kb on - strand, within BACOVA_05153 at 635.718 kb on + strand at 635.725 kb on - strand at 635.982 kb on - strand at 636.012 kb on + strand at 636.039 kb on + strand at 636.045 kb on + strand at 636.070 kb on + strand at 636.103 kb on + strand, within BACOVA_05154 at 636.103 kb on + strand, within BACOVA_05154 at 636.106 kb on - strand, within BACOVA_05154 at 636.209 kb on - strand, within BACOVA_05154 at 636.236 kb on + strand, within BACOVA_05154 at 636.237 kb on - strand, within BACOVA_05154 at 636.353 kb on + strand, within BACOVA_05154 at 636.353 kb on + strand, within BACOVA_05154 at 636.354 kb on - strand, within BACOVA_05154 at 636.471 kb on - strand at 636.492 kb on - strand at 636.500 kb on - strand at 636.517 kb on + strand at 636.520 kb on + strand at 636.521 kb on - strand at 636.522 kb on + strand at 636.527 kb on - strand at 636.527 kb on - strand at 636.558 kb on - strand at 636.616 kb on + strand at 636.617 kb on - strand at 636.648 kb on - strand at 636.722 kb on + strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.784 kb on - strand, within BACOVA_05155 at 636.786 kb on - strand, within BACOVA_05155 at 636.806 kb on + strand at 636.807 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.812 kb on - strand at 636.812 kb on - strand at 636.813 kb on + strand at 636.813 kb on + strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.816 kb on + strand at 636.816 kb on + strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.820 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.830 kb on - strand at 636.867 kb on - strand at 636.867 kb on - strand at 636.871 kb on + strand at 636.871 kb on + strand at 636.894 kb on + strand at 636.901 kb on - strand at 636.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 632,750 + BACOVA_05151 0.80 -0.8 632,776 - BACOVA_05151 0.84 +0.3 632,776 - BACOVA_05151 0.84 -0.1 632,780 + BACOVA_05151 0.85 +0.2 632,780 + BACOVA_05151 0.85 -0.6 632,781 - BACOVA_05151 0.85 -0.9 632,783 + BACOVA_05151 0.86 +2.0 632,784 - BACOVA_05151 0.86 +1.8 632,784 - BACOVA_05151 0.86 +0.6 632,794 + BACOVA_05151 0.88 -1.3 632,795 - BACOVA_05151 0.88 +1.3 632,828 - +0.6 632,840 - -0.7 632,850 + -0.9 632,854 + +0.5 632,854 + +0.0 632,854 + +0.5 632,855 - -0.6 632,855 - -1.1 632,855 - +1.4 632,855 - -0.4 632,855 - -0.1 632,867 + +0.2 632,898 + +1.2 633,226 + BACOVA_05152 0.47 -0.6 633,260 - BACOVA_05152 0.52 -1.6 633,483 + BACOVA_05152 0.83 -0.6 633,492 - BACOVA_05152 0.85 -1.0 633,542 + -1.0 633,619 - -0.3 633,667 - -2.4 633,738 + -1.6 633,878 - -1.0 633,911 - -1.8 634,119 - BACOVA_05153 0.18 -0.6 634,183 - BACOVA_05153 0.21 -1.8 634,209 + BACOVA_05153 0.23 -1.8 634,210 - BACOVA_05153 0.23 -1.1 634,394 - BACOVA_05153 0.31 -1.0 634,765 - BACOVA_05153 0.48 -1.0 634,802 + BACOVA_05153 0.50 -1.0 635,227 - BACOVA_05153 0.69 +1.0 635,230 + BACOVA_05153 0.69 -0.6 635,243 - BACOVA_05153 0.70 +0.4 635,277 + BACOVA_05153 0.71 -1.0 635,282 - BACOVA_05153 0.72 +1.0 635,389 - BACOVA_05153 0.76 -1.3 635,431 + BACOVA_05153 0.78 -2.1 635,466 - BACOVA_05153 0.80 -1.0 635,718 + -1.8 635,725 - -0.6 635,982 - +0.4 636,012 + +0.1 636,039 + +0.7 636,045 + -0.7 636,070 + -0.3 636,103 + BACOVA_05154 0.12 -0.8 636,103 + BACOVA_05154 0.12 -0.4 636,106 - BACOVA_05154 0.13 -1.3 636,209 - BACOVA_05154 0.35 +0.6 636,236 + BACOVA_05154 0.41 +0.4 636,237 - BACOVA_05154 0.41 +0.5 636,353 + BACOVA_05154 0.65 +0.3 636,353 + BACOVA_05154 0.65 +0.3 636,354 - BACOVA_05154 0.65 -0.6 636,471 - -0.4 636,492 - -0.5 636,500 - -0.6 636,517 + -1.3 636,520 + +0.9 636,521 - +0.6 636,522 + -0.8 636,527 - +1.0 636,527 - -0.9 636,558 - -1.4 636,616 + -1.6 636,617 - +0.0 636,648 - -0.2 636,722 + BACOVA_05155 0.43 -1.0 636,723 - BACOVA_05155 0.44 +0.2 636,723 - BACOVA_05155 0.44 +0.9 636,761 - BACOVA_05155 0.66 +0.8 636,761 - BACOVA_05155 0.66 +1.0 636,784 - BACOVA_05155 0.80 +0.2 636,786 - BACOVA_05155 0.81 +1.3 636,806 + -0.2 636,807 - +0.7 636,810 - -0.1 636,810 - -0.9 636,810 - +1.6 636,812 - +1.2 636,812 - +0.9 636,813 + -2.6 636,813 + -1.1 636,814 - -0.3 636,814 - -0.3 636,814 - +0.7 636,814 - +1.0 636,816 + +0.1 636,816 + +1.0 636,817 - -0.3 636,817 - -0.6 636,817 - -0.2 636,817 - -0.2 636,820 - +0.1 636,825 - +0.4 636,825 - -1.0 636,825 - -0.2 636,827 - -0.6 636,827 - +0.5 636,827 - +0.0 636,830 - -0.0 636,867 - -1.6 636,867 - +0.2 636,871 + -0.5 636,871 + +0.2 636,894 + -0.9 636,901 - -0.5 636,901 - -0.6
Or see this region's nucleotide sequence