Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03119

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03118 and BACOVA_03119 are separated by 154 nucleotidesBACOVA_03119 and BACOVA_03120 are separated by 72 nucleotides BACOVA_03118: BACOVA_03118 - glycosyl hydrolase family 2, sugar binding domain protein, at 203,687 to 206,929 _03118 BACOVA_03119: BACOVA_03119 - hypothetical protein, at 207,084 to 208,469 _03119 BACOVA_03120: BACOVA_03120 - bacterial alpha-L-rhamnosidase, at 208,542 to 210,359 _03120 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 206.091 kb on + strand, within BACOVA_03118at 206.124 kb on + strand, within BACOVA_03118at 206.124 kb on + strand, within BACOVA_03118at 206.124 kb on + strand, within BACOVA_03118at 206.125 kb on - strand, within BACOVA_03118at 206.134 kb on + strand, within BACOVA_03118at 206.157 kb on + strand, within BACOVA_03118at 206.158 kb on - strand, within BACOVA_03118at 206.199 kb on - strand, within BACOVA_03118at 206.199 kb on - strand, within BACOVA_03118at 206.200 kb on + strand, within BACOVA_03118at 206.241 kb on - strand, within BACOVA_03118at 206.245 kb on + strand, within BACOVA_03118at 206.246 kb on - strand, within BACOVA_03118at 206.257 kb on + strand, within BACOVA_03118at 206.333 kb on - strand, within BACOVA_03118at 206.409 kb on + strand, within BACOVA_03118at 206.423 kb on + strand, within BACOVA_03118at 206.423 kb on + strand, within BACOVA_03118at 206.424 kb on - strand, within BACOVA_03118at 206.458 kb on + strand, within BACOVA_03118at 206.466 kb on - strand, within BACOVA_03118at 206.625 kb on - strandat 206.625 kb on - strandat 206.847 kb on + strandat 206.847 kb on + strandat 206.932 kb on - strandat 206.933 kb on + strandat 206.942 kb on - strandat 206.944 kb on - strandat 206.962 kb on + strandat 206.962 kb on + strandat 206.973 kb on - strandat 207.098 kb on + strandat 207.099 kb on - strandat 207.099 kb on - strandat 207.103 kb on + strandat 207.103 kb on + strandat 207.104 kb on - strandat 207.105 kb on + strandat 207.106 kb on - strandat 207.109 kb on - strandat 207.142 kb on + strandat 207.143 kb on - strandat 207.143 kb on - strandat 207.143 kb on - strandat 207.143 kb on - strandat 207.146 kb on + strandat 207.172 kb on + strandat 207.173 kb on - strandat 207.173 kb on - strandat 207.227 kb on + strand, within BACOVA_03119at 207.291 kb on + strand, within BACOVA_03119at 207.292 kb on - strand, within BACOVA_03119at 207.292 kb on - strand, within BACOVA_03119at 207.303 kb on - strand, within BACOVA_03119at 207.342 kb on + strand, within BACOVA_03119at 207.343 kb on - strand, within BACOVA_03119at 207.389 kb on + strand, within BACOVA_03119at 207.400 kb on + strand, within BACOVA_03119at 207.408 kb on + strand, within BACOVA_03119at 207.408 kb on + strand, within BACOVA_03119at 207.409 kb on - strand, within BACOVA_03119at 207.409 kb on - strand, within BACOVA_03119at 207.409 kb on - strand, within BACOVA_03119at 207.409 kb on - strand, within BACOVA_03119at 207.409 kb on - strand, within BACOVA_03119at 207.411 kb on - strand, within BACOVA_03119at 207.413 kb on - strand, within BACOVA_03119at 207.434 kb on + strand, within BACOVA_03119at 207.434 kb on + strand, within BACOVA_03119at 207.435 kb on - strand, within BACOVA_03119at 207.522 kb on + strand, within BACOVA_03119at 207.522 kb on + strand, within BACOVA_03119at 207.526 kb on + strand, within BACOVA_03119at 207.526 kb on + strand, within BACOVA_03119at 207.527 kb on - strand, within BACOVA_03119at 207.596 kb on - strand, within BACOVA_03119at 207.625 kb on - strand, within BACOVA_03119at 207.741 kb on - strand, within BACOVA_03119at 207.768 kb on + strand, within BACOVA_03119at 207.769 kb on - strand, within BACOVA_03119at 207.896 kb on + strand, within BACOVA_03119at 207.959 kb on + strand, within BACOVA_03119at 207.960 kb on - strand, within BACOVA_03119at 208.028 kb on + strand, within BACOVA_03119at 208.047 kb on + strand, within BACOVA_03119at 208.070 kb on + strand, within BACOVA_03119at 208.071 kb on - strand, within BACOVA_03119at 208.117 kb on - strand, within BACOVA_03119at 208.120 kb on - strand, within BACOVA_03119at 208.120 kb on - strand, within BACOVA_03119at 208.127 kb on + strand, within BACOVA_03119at 208.128 kb on - strand, within BACOVA_03119at 208.167 kb on - strand, within BACOVA_03119at 208.240 kb on - strand, within BACOVA_03119at 208.252 kb on - strand, within BACOVA_03119at 208.301 kb on + strand, within BACOVA_03119at 208.344 kb on - strandat 208.414 kb on - strandat 208.443 kb on + strandat 208.476 kb on - strandat 208.484 kb on + strandat 208.496 kb on + strandat 208.496 kb on + strandat 208.518 kb on + strandat 208.519 kb on - strandat 208.519 kb on - strandat 208.528 kb on - strandat 208.587 kb on + strandat 208.588 kb on - strandat 208.649 kb on + strandat 208.686 kb on + strandat 208.688 kb on + strandat 208.688 kb on + strandat 208.688 kb on + strandat 208.688 kb on + strandat 208.689 kb on - strandat 208.692 kb on + strandat 208.801 kb on + strand, within BACOVA_03120at 208.801 kb on + strand, within BACOVA_03120at 208.801 kb on + strand, within BACOVA_03120at 208.801 kb on + strand, within BACOVA_03120at 208.801 kb on + strand, within BACOVA_03120at 208.802 kb on - strand, within BACOVA_03120at 208.802 kb on - strand, within BACOVA_03120at 208.802 kb on - strand, within BACOVA_03120at 208.802 kb on - strand, within BACOVA_03120at 208.830 kb on - strand, within BACOVA_03120at 208.852 kb on - strand, within BACOVA_03120at 208.852 kb on - strand, within BACOVA_03120at 208.973 kb on - strand, within BACOVA_03120at 209.003 kb on + strand, within BACOVA_03120at 209.003 kb on + strand, within BACOVA_03120at 209.004 kb on - strand, within BACOVA_03120at 209.004 kb on - strand, within BACOVA_03120at 209.005 kb on + strand, within BACOVA_03120at 209.005 kb on + strand, within BACOVA_03120at 209.008 kb on + strand, within BACOVA_03120at 209.043 kb on + strand, within BACOVA_03120at 209.091 kb on - strand, within BACOVA_03120at 209.152 kb on - strand, within BACOVA_03120at 209.217 kb on - strand, within BACOVA_03120at 209.239 kb on - strand, within BACOVA_03120at 209.318 kb on + strand, within BACOVA_03120at 209.318 kb on + strand, within BACOVA_03120at 209.389 kb on - strand, within BACOVA_03120at 209.401 kb on - strand, within BACOVA_03120at 209.409 kb on - strand, within BACOVA_03120at 209.409 kb on - strand, within BACOVA_03120at 209.409 kb on - strand, within BACOVA_03120at 209.411 kb on + strand, within BACOVA_03120at 209.411 kb on + strand, within BACOVA_03120at 209.412 kb on - strand, within BACOVA_03120at 209.414 kb on - strand, within BACOVA_03120at 209.452 kb on + strand, within BACOVA_03120at 209.467 kb on + strand, within BACOVA_03120at 209.467 kb on + strand, within BACOVA_03120

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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206,091 + BACOVA_03118 0.74 -1.1
206,124 + BACOVA_03118 0.75 -0.6
206,124 + BACOVA_03118 0.75 -1.1
206,124 + BACOVA_03118 0.75 -0.3
206,125 - BACOVA_03118 0.75 +1.4
206,134 + BACOVA_03118 0.75 -0.7
206,157 + BACOVA_03118 0.76 -1.6
206,158 - BACOVA_03118 0.76 -0.6
206,199 - BACOVA_03118 0.77 -0.4
206,199 - BACOVA_03118 0.77 +0.4
206,200 + BACOVA_03118 0.77 -1.0
206,241 - BACOVA_03118 0.79 +0.2
206,245 + BACOVA_03118 0.79 +1.3
206,246 - BACOVA_03118 0.79 -0.4
206,257 + BACOVA_03118 0.79 -1.0
206,333 - BACOVA_03118 0.82 -0.3
206,409 + BACOVA_03118 0.84 -0.4
206,423 + BACOVA_03118 0.84 +0.7
206,423 + BACOVA_03118 0.84 -0.6
206,424 - BACOVA_03118 0.84 -0.0
206,458 + BACOVA_03118 0.85 +0.1
206,466 - BACOVA_03118 0.86 +0.2
206,625 - -0.2
206,625 - -1.0
206,847 + +0.2
206,847 + +0.6
206,932 - +1.0
206,933 + -1.2
206,942 - -1.3
206,944 - -0.1
206,962 + -1.1
206,962 + +0.3
206,973 - +0.1
207,098 + +1.0
207,099 - +0.6
207,099 - +0.5
207,103 + +0.1
207,103 + -0.6
207,104 - +1.6
207,105 + -0.6
207,106 - -1.0
207,109 - -0.8
207,142 + +0.5
207,143 - -0.6
207,143 - +0.3
207,143 - +0.4
207,143 - -0.7
207,146 + +0.3
207,172 + -0.3
207,173 - +0.5
207,173 - +0.2
207,227 + BACOVA_03119 0.10 +0.9
207,291 + BACOVA_03119 0.15 +0.4
207,292 - BACOVA_03119 0.15 -1.0
207,292 - BACOVA_03119 0.15 -0.6
207,303 - BACOVA_03119 0.16 -1.3
207,342 + BACOVA_03119 0.19 -0.6
207,343 - BACOVA_03119 0.19 +0.3
207,389 + BACOVA_03119 0.22 -0.1
207,400 + BACOVA_03119 0.23 +2.2
207,408 + BACOVA_03119 0.23 -0.7
207,408 + BACOVA_03119 0.23 -0.2
207,409 - BACOVA_03119 0.23 -0.2
207,409 - BACOVA_03119 0.23 +0.0
207,409 - BACOVA_03119 0.23 +0.7
207,409 - BACOVA_03119 0.23 -0.2
207,409 - BACOVA_03119 0.23 -2.6
207,411 - BACOVA_03119 0.24 -0.9
207,413 - BACOVA_03119 0.24 -0.7
207,434 + BACOVA_03119 0.25 +0.0
207,434 + BACOVA_03119 0.25 -1.0
207,435 - BACOVA_03119 0.25 +2.4
207,522 + BACOVA_03119 0.32 +0.8
207,522 + BACOVA_03119 0.32 -0.6
207,526 + BACOVA_03119 0.32 +0.4
207,526 + BACOVA_03119 0.32 -1.4
207,527 - BACOVA_03119 0.32 +0.3
207,596 - BACOVA_03119 0.37 -0.8
207,625 - BACOVA_03119 0.39 +0.6
207,741 - BACOVA_03119 0.47 -1.8
207,768 + BACOVA_03119 0.49 +0.1
207,769 - BACOVA_03119 0.49 -1.6
207,896 + BACOVA_03119 0.59 -0.2
207,959 + BACOVA_03119 0.63 -0.6
207,960 - BACOVA_03119 0.63 +0.2
208,028 + BACOVA_03119 0.68 -0.2
208,047 + BACOVA_03119 0.69 -0.5
208,070 + BACOVA_03119 0.71 +1.2
208,071 - BACOVA_03119 0.71 +0.3
208,117 - BACOVA_03119 0.75 -0.7
208,120 - BACOVA_03119 0.75 -1.0
208,120 - BACOVA_03119 0.75 +0.5
208,127 + BACOVA_03119 0.75 +0.6
208,128 - BACOVA_03119 0.75 +2.0
208,167 - BACOVA_03119 0.78 +1.0
208,240 - BACOVA_03119 0.83 +0.6
208,252 - BACOVA_03119 0.84 -0.4
208,301 + BACOVA_03119 0.88 +0.3
208,344 - +0.3
208,414 - -0.0
208,443 + +0.0
208,476 - +0.5
208,484 + -0.7
208,496 + -0.3
208,496 + +0.3
208,518 + -0.4
208,519 - -0.2
208,519 - +0.7
208,528 - -0.7
208,587 + -0.6
208,588 - -0.1
208,649 + -0.9
208,686 + +1.0
208,688 + -1.3
208,688 + +1.3
208,688 + -1.0
208,688 + -0.0
208,689 - -0.7
208,692 + +0.6
208,801 + BACOVA_03120 0.14 -0.6
208,801 + BACOVA_03120 0.14 +0.9
208,801 + BACOVA_03120 0.14 -1.6
208,801 + BACOVA_03120 0.14 -0.6
208,801 + BACOVA_03120 0.14 -0.9
208,802 - BACOVA_03120 0.14 -0.6
208,802 - BACOVA_03120 0.14 -1.0
208,802 - BACOVA_03120 0.14 -0.2
208,802 - BACOVA_03120 0.14 -1.2
208,830 - BACOVA_03120 0.16 -1.6
208,852 - BACOVA_03120 0.17 +0.4
208,852 - BACOVA_03120 0.17 +0.1
208,973 - BACOVA_03120 0.24 -1.1
209,003 + BACOVA_03120 0.25 -0.1
209,003 + BACOVA_03120 0.25 +0.1
209,004 - BACOVA_03120 0.25 +0.0
209,004 - BACOVA_03120 0.25 +1.0
209,005 + BACOVA_03120 0.25 -0.4
209,005 + BACOVA_03120 0.25 +2.0
209,008 + BACOVA_03120 0.26 -0.8
209,043 + BACOVA_03120 0.28 -0.2
209,091 - BACOVA_03120 0.30 -1.1
209,152 - BACOVA_03120 0.34 +0.1
209,217 - BACOVA_03120 0.37 -1.6
209,239 - BACOVA_03120 0.38 +0.3
209,318 + BACOVA_03120 0.43 +0.3
209,318 + BACOVA_03120 0.43 -0.6
209,389 - BACOVA_03120 0.47 -0.5
209,401 - BACOVA_03120 0.47 -0.7
209,409 - BACOVA_03120 0.48 -1.3
209,409 - BACOVA_03120 0.48 -1.0
209,409 - BACOVA_03120 0.48 -1.0
209,411 + BACOVA_03120 0.48 +0.0
209,411 + BACOVA_03120 0.48 -0.1
209,412 - BACOVA_03120 0.48 -0.6
209,414 - BACOVA_03120 0.48 -0.9
209,452 + BACOVA_03120 0.50 -0.4
209,467 + BACOVA_03120 0.51 -0.3
209,467 + BACOVA_03120 0.51 +0.0

Or see this region's nucleotide sequence