Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02853

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02852 and BACOVA_02853 are separated by 115 nucleotidesBACOVA_02853 and BACOVA_02854 are separated by 243 nucleotidesBACOVA_02854 and BACOVA_02855 are separated by 38 nucleotides BACOVA_02852: BACOVA_02852 - hypothetical protein, at 335,440 to 337,551 _02852 BACOVA_02853: BACOVA_02853 - radical SAM domain protein, at 337,667 to 338,440 _02853 BACOVA_02854: BACOVA_02854 - hypothetical protein, at 338,684 to 338,902 _02854 BACOVA_02855: BACOVA_02855 - hypothetical protein, at 338,941 to 339,063 _02855 Position (kb) 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 336.689 kb on + strand, within BACOVA_02852at 336.798 kb on + strand, within BACOVA_02852at 336.799 kb on - strand, within BACOVA_02852at 336.799 kb on - strand, within BACOVA_02852at 336.822 kb on - strand, within BACOVA_02852at 336.871 kb on + strand, within BACOVA_02852at 336.872 kb on - strand, within BACOVA_02852at 336.874 kb on - strand, within BACOVA_02852at 336.902 kb on + strand, within BACOVA_02852at 336.929 kb on - strand, within BACOVA_02852at 336.929 kb on - strand, within BACOVA_02852at 336.944 kb on - strand, within BACOVA_02852at 336.969 kb on + strand, within BACOVA_02852at 336.969 kb on + strand, within BACOVA_02852at 336.971 kb on + strand, within BACOVA_02852at 336.971 kb on + strand, within BACOVA_02852at 336.973 kb on + strand, within BACOVA_02852at 336.974 kb on - strand, within BACOVA_02852at 336.985 kb on - strand, within BACOVA_02852at 336.985 kb on - strand, within BACOVA_02852at 337.033 kb on - strand, within BACOVA_02852at 337.125 kb on - strand, within BACOVA_02852at 337.288 kb on - strand, within BACOVA_02852at 337.300 kb on - strand, within BACOVA_02852at 337.330 kb on + strand, within BACOVA_02852at 337.355 kb on + strandat 337.355 kb on + strandat 337.402 kb on - strandat 337.402 kb on - strandat 337.404 kb on + strandat 337.409 kb on + strandat 337.501 kb on + strandat 337.502 kb on - strandat 337.527 kb on - strandat 337.560 kb on - strandat 337.564 kb on + strandat 337.568 kb on - strandat 337.568 kb on - strandat 337.610 kb on - strandat 337.610 kb on - strandat 337.610 kb on - strandat 337.615 kb on - strandat 337.616 kb on + strandat 337.644 kb on + strandat 337.645 kb on - strandat 337.658 kb on + strandat 337.659 kb on - strandat 337.664 kb on - strandat 337.965 kb on + strand, within BACOVA_02853at 338.032 kb on + strand, within BACOVA_02853at 338.077 kb on - strand, within BACOVA_02853at 338.081 kb on - strand, within BACOVA_02853at 338.081 kb on - strand, within BACOVA_02853at 338.084 kb on - strand, within BACOVA_02853at 338.086 kb on + strand, within BACOVA_02853at 338.118 kb on - strand, within BACOVA_02853at 338.251 kb on + strand, within BACOVA_02853at 338.251 kb on + strand, within BACOVA_02853at 338.252 kb on - strand, within BACOVA_02853at 338.252 kb on - strand, within BACOVA_02853at 338.254 kb on + strand, within BACOVA_02853at 338.322 kb on + strand, within BACOVA_02853at 338.324 kb on + strand, within BACOVA_02853at 338.326 kb on + strand, within BACOVA_02853at 338.326 kb on + strand, within BACOVA_02853at 338.327 kb on - strand, within BACOVA_02853at 338.383 kb on - strandat 338.389 kb on + strandat 338.417 kb on - strandat 338.417 kb on - strandat 338.435 kb on + strandat 338.444 kb on - strandat 338.462 kb on + strandat 338.463 kb on - strandat 338.476 kb on - strandat 338.479 kb on - strandat 338.496 kb on + strandat 338.497 kb on - strandat 338.497 kb on - strandat 338.529 kb on - strandat 338.531 kb on - strandat 338.537 kb on + strandat 338.542 kb on + strandat 338.543 kb on - strandat 338.558 kb on - strandat 338.597 kb on + strandat 338.598 kb on - strandat 338.598 kb on - strandat 338.654 kb on + strandat 338.654 kb on + strandat 338.700 kb on - strandat 338.731 kb on - strand, within BACOVA_02854at 338.826 kb on + strand, within BACOVA_02854at 338.830 kb on + strand, within BACOVA_02854at 338.863 kb on - strand, within BACOVA_02854at 338.901 kb on - strandat 338.955 kb on + strand, within BACOVA_02855at 338.967 kb on - strand, within BACOVA_02855at 339.126 kb on - strandat 339.138 kb on - strandat 339.173 kb on + strandat 339.178 kb on - strandat 339.226 kb on - strandat 339.344 kb on + strandat 339.344 kb on + strandat 339.353 kb on + strandat 339.369 kb on - strandat 339.374 kb on + strandat 339.375 kb on - strandat 339.385 kb on + strandat 339.386 kb on - strandat 339.386 kb on - strandat 339.411 kb on - strandat 339.412 kb on + strandat 339.413 kb on - strandat 339.413 kb on - strandat 339.414 kb on + strandat 339.414 kb on + strandat 339.415 kb on - strandat 339.415 kb on - strandat 339.418 kb on - strandat 339.427 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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336,689 + BACOVA_02852 0.59 -0.2
336,798 + BACOVA_02852 0.64 +0.2
336,799 - BACOVA_02852 0.64 -0.4
336,799 - BACOVA_02852 0.64 -1.3
336,822 - BACOVA_02852 0.65 -0.2
336,871 + BACOVA_02852 0.68 +0.1
336,872 - BACOVA_02852 0.68 -0.4
336,874 - BACOVA_02852 0.68 +0.4
336,902 + BACOVA_02852 0.69 +0.7
336,929 - BACOVA_02852 0.71 -0.2
336,929 - BACOVA_02852 0.71 +0.0
336,944 - BACOVA_02852 0.71 -0.7
336,969 + BACOVA_02852 0.72 -0.1
336,969 + BACOVA_02852 0.72 -0.8
336,971 + BACOVA_02852 0.72 +0.2
336,971 + BACOVA_02852 0.72 +0.1
336,973 + BACOVA_02852 0.73 +0.7
336,974 - BACOVA_02852 0.73 +0.7
336,985 - BACOVA_02852 0.73 -0.4
336,985 - BACOVA_02852 0.73 -0.3
337,033 - BACOVA_02852 0.75 -0.0
337,125 - BACOVA_02852 0.80 -0.6
337,288 - BACOVA_02852 0.88 -1.7
337,300 - BACOVA_02852 0.88 -0.1
337,330 + BACOVA_02852 0.89 +0.2
337,355 + +0.2
337,355 + -1.0
337,402 - -0.2
337,402 - -0.3
337,404 + -1.1
337,409 + +0.0
337,501 + -0.0
337,502 - -0.9
337,527 - +0.6
337,560 - -0.6
337,564 + -0.3
337,568 - -0.1
337,568 - +0.3
337,610 - -0.2
337,610 - -1.9
337,610 - -1.2
337,615 - -0.5
337,616 + +0.1
337,644 + -1.5
337,645 - -1.5
337,658 + -0.2
337,659 - -1.5
337,664 - -2.6
337,965 + BACOVA_02853 0.39 -1.1
338,032 + BACOVA_02853 0.47 -1.3
338,077 - BACOVA_02853 0.53 -2.1
338,081 - BACOVA_02853 0.53 -1.4
338,081 - BACOVA_02853 0.53 -1.3
338,084 - BACOVA_02853 0.54 -1.9
338,086 + BACOVA_02853 0.54 -2.1
338,118 - BACOVA_02853 0.58 -2.1
338,251 + BACOVA_02853 0.75 -1.5
338,251 + BACOVA_02853 0.75 -1.9
338,252 - BACOVA_02853 0.76 -2.1
338,252 - BACOVA_02853 0.76 -0.9
338,254 + BACOVA_02853 0.76 -1.6
338,322 + BACOVA_02853 0.85 -0.8
338,324 + BACOVA_02853 0.85 -1.9
338,326 + BACOVA_02853 0.85 -2.8
338,326 + BACOVA_02853 0.85 -2.7
338,327 - BACOVA_02853 0.85 -1.8
338,383 - +0.1
338,389 + +0.1
338,417 - -1.4
338,417 - -2.2
338,435 + +0.1
338,444 - -0.4
338,462 + -0.0
338,463 - +0.3
338,476 - -0.2
338,479 - -0.3
338,496 + -0.9
338,497 - +0.0
338,497 - -0.1
338,529 - -1.7
338,531 - -1.3
338,537 + -0.5
338,542 + +0.3
338,543 - +0.2
338,558 - +1.5
338,597 + -0.4
338,598 - +1.0
338,598 - +0.1
338,654 + +0.1
338,654 + -1.4
338,700 - -0.4
338,731 - BACOVA_02854 0.21 +0.9
338,826 + BACOVA_02854 0.65 -0.5
338,830 + BACOVA_02854 0.67 -0.1
338,863 - BACOVA_02854 0.82 +0.7
338,901 - +2.6
338,955 + BACOVA_02855 0.11 +0.1
338,967 - BACOVA_02855 0.21 -0.4
339,126 - -0.7
339,138 - +0.2
339,173 + -0.6
339,178 - +0.5
339,226 - +0.2
339,344 + +0.4
339,344 + -2.9
339,353 + -0.3
339,369 - -0.2
339,374 + +0.6
339,375 - -0.8
339,385 + +1.2
339,386 - -0.4
339,386 - +1.2
339,411 - -0.4
339,412 + -0.6
339,413 - +0.1
339,413 - +0.7
339,414 + -0.7
339,414 + -1.1
339,415 - +0.1
339,415 - -0.8
339,418 - +0.8
339,427 - -0.8

Or see this region's nucleotide sequence