Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02852

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02851 and BACOVA_02852 are separated by 25 nucleotidesBACOVA_02852 and BACOVA_02853 are separated by 115 nucleotides BACOVA_02851: BACOVA_02851 - hypothetical protein, at 333,066 to 335,414 _02851 BACOVA_02852: BACOVA_02852 - hypothetical protein, at 335,440 to 337,551 _02852 BACOVA_02853: BACOVA_02853 - radical SAM domain protein, at 337,667 to 338,440 _02853 Position (kb) 335 336 337 338Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 334.441 kb on - strand, within BACOVA_02851at 334.442 kb on + strand, within BACOVA_02851at 334.443 kb on - strand, within BACOVA_02851at 334.445 kb on + strand, within BACOVA_02851at 334.445 kb on + strand, within BACOVA_02851at 334.446 kb on - strand, within BACOVA_02851at 334.451 kb on + strand, within BACOVA_02851at 334.451 kb on + strand, within BACOVA_02851at 334.467 kb on + strand, within BACOVA_02851at 334.468 kb on - strand, within BACOVA_02851at 334.479 kb on - strand, within BACOVA_02851at 334.479 kb on - strand, within BACOVA_02851at 334.528 kb on + strand, within BACOVA_02851at 334.547 kb on + strand, within BACOVA_02851at 334.547 kb on + strand, within BACOVA_02851at 334.548 kb on - strand, within BACOVA_02851at 334.548 kb on - strand, within BACOVA_02851at 334.548 kb on - strand, within BACOVA_02851at 334.557 kb on - strand, within BACOVA_02851at 334.575 kb on - strand, within BACOVA_02851at 334.655 kb on - strand, within BACOVA_02851at 334.678 kb on + strand, within BACOVA_02851at 334.678 kb on + strand, within BACOVA_02851at 334.679 kb on - strand, within BACOVA_02851at 334.716 kb on - strand, within BACOVA_02851at 334.716 kb on - strand, within BACOVA_02851at 334.750 kb on - strand, within BACOVA_02851at 334.788 kb on - strand, within BACOVA_02851at 334.807 kb on + strand, within BACOVA_02851at 334.842 kb on - strand, within BACOVA_02851at 334.914 kb on + strand, within BACOVA_02851at 334.915 kb on - strand, within BACOVA_02851at 334.935 kb on + strand, within BACOVA_02851at 334.940 kb on + strand, within BACOVA_02851at 334.941 kb on - strand, within BACOVA_02851at 334.949 kb on + strand, within BACOVA_02851at 334.950 kb on - strand, within BACOVA_02851at 334.958 kb on + strand, within BACOVA_02851at 334.959 kb on - strand, within BACOVA_02851at 334.968 kb on + strand, within BACOVA_02851at 334.969 kb on - strand, within BACOVA_02851at 334.970 kb on + strand, within BACOVA_02851at 334.970 kb on + strand, within BACOVA_02851at 334.971 kb on - strand, within BACOVA_02851at 334.971 kb on - strand, within BACOVA_02851at 334.971 kb on - strand, within BACOVA_02851at 334.972 kb on + strand, within BACOVA_02851at 334.973 kb on - strand, within BACOVA_02851at 334.976 kb on - strand, within BACOVA_02851at 335.010 kb on - strand, within BACOVA_02851at 335.055 kb on + strand, within BACOVA_02851at 335.126 kb on + strand, within BACOVA_02851at 335.126 kb on + strand, within BACOVA_02851at 335.126 kb on + strand, within BACOVA_02851at 335.127 kb on - strand, within BACOVA_02851at 335.158 kb on + strand, within BACOVA_02851at 335.159 kb on - strand, within BACOVA_02851at 335.170 kb on + strand, within BACOVA_02851at 335.201 kb on - strandat 335.210 kb on + strandat 335.210 kb on + strandat 335.211 kb on - strandat 335.217 kb on - strandat 335.217 kb on - strandat 335.232 kb on + strandat 335.233 kb on - strandat 335.240 kb on + strandat 335.262 kb on - strandat 335.276 kb on - strandat 335.344 kb on - strandat 335.344 kb on - strandat 335.346 kb on - strandat 335.346 kb on - strandat 335.352 kb on - strandat 335.352 kb on - strandat 335.403 kb on - strandat 335.548 kb on - strandat 335.548 kb on - strandat 335.572 kb on + strandat 335.572 kb on + strandat 335.572 kb on + strandat 335.572 kb on + strandat 335.573 kb on - strandat 335.594 kb on - strandat 335.594 kb on - strandat 335.648 kb on + strandat 335.663 kb on - strand, within BACOVA_02852at 335.696 kb on + strand, within BACOVA_02852at 335.704 kb on - strand, within BACOVA_02852at 335.706 kb on + strand, within BACOVA_02852at 335.706 kb on + strand, within BACOVA_02852at 335.708 kb on + strand, within BACOVA_02852at 335.709 kb on - strand, within BACOVA_02852at 335.709 kb on - strand, within BACOVA_02852at 335.751 kb on + strand, within BACOVA_02852at 335.761 kb on - strand, within BACOVA_02852at 335.783 kb on - strand, within BACOVA_02852at 335.808 kb on + strand, within BACOVA_02852at 335.809 kb on - strand, within BACOVA_02852at 335.866 kb on - strand, within BACOVA_02852at 335.885 kb on - strand, within BACOVA_02852at 335.914 kb on + strand, within BACOVA_02852at 335.914 kb on + strand, within BACOVA_02852at 335.915 kb on - strand, within BACOVA_02852at 335.922 kb on + strand, within BACOVA_02852at 335.923 kb on - strand, within BACOVA_02852at 335.969 kb on + strand, within BACOVA_02852at 335.970 kb on - strand, within BACOVA_02852at 335.997 kb on + strand, within BACOVA_02852at 336.034 kb on + strand, within BACOVA_02852at 336.034 kb on + strand, within BACOVA_02852at 336.035 kb on - strand, within BACOVA_02852at 336.036 kb on + strand, within BACOVA_02852at 336.036 kb on + strand, within BACOVA_02852at 336.036 kb on + strand, within BACOVA_02852at 336.036 kb on + strand, within BACOVA_02852at 336.037 kb on - strand, within BACOVA_02852at 336.037 kb on - strand, within BACOVA_02852at 336.037 kb on - strand, within BACOVA_02852at 336.060 kb on - strand, within BACOVA_02852at 336.073 kb on - strand, within BACOVA_02852at 336.073 kb on - strand, within BACOVA_02852at 336.075 kb on + strand, within BACOVA_02852at 336.075 kb on + strand, within BACOVA_02852at 336.075 kb on + strand, within BACOVA_02852at 336.076 kb on - strand, within BACOVA_02852at 336.076 kb on - strand, within BACOVA_02852at 336.102 kb on - strand, within BACOVA_02852at 336.152 kb on + strand, within BACOVA_02852at 336.181 kb on + strand, within BACOVA_02852at 336.201 kb on + strand, within BACOVA_02852at 336.234 kb on + strand, within BACOVA_02852at 336.260 kb on + strand, within BACOVA_02852at 336.261 kb on - strand, within BACOVA_02852at 336.261 kb on - strand, within BACOVA_02852at 336.261 kb on - strand, within BACOVA_02852at 336.261 kb on - strand, within BACOVA_02852at 336.265 kb on - strand, within BACOVA_02852at 336.296 kb on + strand, within BACOVA_02852at 336.333 kb on + strand, within BACOVA_02852at 336.342 kb on + strand, within BACOVA_02852at 336.363 kb on - strand, within BACOVA_02852at 336.408 kb on + strand, within BACOVA_02852at 336.409 kb on - strand, within BACOVA_02852at 336.409 kb on - strand, within BACOVA_02852at 336.415 kb on + strand, within BACOVA_02852at 336.450 kb on + strand, within BACOVA_02852at 336.451 kb on - strand, within BACOVA_02852at 336.533 kb on - strand, within BACOVA_02852at 336.565 kb on - strand, within BACOVA_02852at 336.565 kb on - strand, within BACOVA_02852at 336.585 kb on + strand, within BACOVA_02852at 336.585 kb on + strand, within BACOVA_02852at 336.586 kb on - strand, within BACOVA_02852at 336.586 kb on - strand, within BACOVA_02852at 336.638 kb on - strand, within BACOVA_02852at 336.638 kb on - strand, within BACOVA_02852at 336.645 kb on - strand, within BACOVA_02852at 336.645 kb on - strand, within BACOVA_02852at 336.645 kb on - strand, within BACOVA_02852at 336.645 kb on - strand, within BACOVA_02852at 336.689 kb on + strand, within BACOVA_02852at 336.798 kb on + strand, within BACOVA_02852at 336.799 kb on - strand, within BACOVA_02852at 336.799 kb on - strand, within BACOVA_02852at 336.822 kb on - strand, within BACOVA_02852at 336.871 kb on + strand, within BACOVA_02852at 336.872 kb on - strand, within BACOVA_02852at 336.874 kb on - strand, within BACOVA_02852at 336.902 kb on + strand, within BACOVA_02852at 336.929 kb on - strand, within BACOVA_02852at 336.929 kb on - strand, within BACOVA_02852at 336.944 kb on - strand, within BACOVA_02852at 336.969 kb on + strand, within BACOVA_02852at 336.969 kb on + strand, within BACOVA_02852at 336.971 kb on + strand, within BACOVA_02852at 336.971 kb on + strand, within BACOVA_02852at 336.973 kb on + strand, within BACOVA_02852at 336.974 kb on - strand, within BACOVA_02852at 336.985 kb on - strand, within BACOVA_02852at 336.985 kb on - strand, within BACOVA_02852at 337.033 kb on - strand, within BACOVA_02852at 337.125 kb on - strand, within BACOVA_02852at 337.288 kb on - strand, within BACOVA_02852at 337.300 kb on - strand, within BACOVA_02852at 337.330 kb on + strand, within BACOVA_02852at 337.355 kb on + strandat 337.355 kb on + strandat 337.402 kb on - strandat 337.402 kb on - strandat 337.404 kb on + strandat 337.409 kb on + strandat 337.501 kb on + strandat 337.502 kb on - strandat 337.527 kb on - strandat 337.560 kb on - strandat 337.564 kb on + strandat 337.568 kb on - strandat 337.568 kb on - strandat 337.610 kb on - strandat 337.610 kb on - strandat 337.610 kb on - strandat 337.615 kb on - strandat 337.616 kb on + strandat 337.644 kb on + strandat 337.645 kb on - strandat 337.658 kb on + strandat 337.659 kb on - strandat 337.664 kb on - strandat 337.965 kb on + strand, within BACOVA_02853at 338.032 kb on + strand, within BACOVA_02853at 338.077 kb on - strand, within BACOVA_02853at 338.081 kb on - strand, within BACOVA_02853at 338.081 kb on - strand, within BACOVA_02853at 338.084 kb on - strand, within BACOVA_02853at 338.086 kb on + strand, within BACOVA_02853at 338.118 kb on - strand, within BACOVA_02853at 338.251 kb on + strand, within BACOVA_02853at 338.251 kb on + strand, within BACOVA_02853at 338.252 kb on - strand, within BACOVA_02853at 338.252 kb on - strand, within BACOVA_02853at 338.254 kb on + strand, within BACOVA_02853at 338.322 kb on + strand, within BACOVA_02853at 338.324 kb on + strand, within BACOVA_02853at 338.326 kb on + strand, within BACOVA_02853at 338.326 kb on + strand, within BACOVA_02853at 338.327 kb on - strand, within BACOVA_02853at 338.383 kb on - strandat 338.389 kb on + strandat 338.417 kb on - strandat 338.417 kb on - strandat 338.435 kb on + strandat 338.444 kb on - strandat 338.462 kb on + strandat 338.463 kb on - strandat 338.476 kb on - strandat 338.479 kb on - strandat 338.496 kb on + strandat 338.497 kb on - strandat 338.497 kb on - strandat 338.529 kb on - strandat 338.531 kb on - strandat 338.537 kb on + strandat 338.542 kb on + strandat 338.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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334,441 - BACOVA_02851 0.59 -4.4
334,442 + BACOVA_02851 0.59 +0.1
334,443 - BACOVA_02851 0.59 +0.3
334,445 + BACOVA_02851 0.59 +0.2
334,445 + BACOVA_02851 0.59 -0.6
334,446 - BACOVA_02851 0.59 -0.7
334,451 + BACOVA_02851 0.59 -1.3
334,451 + BACOVA_02851 0.59 +0.8
334,467 + BACOVA_02851 0.60 -0.4
334,468 - BACOVA_02851 0.60 -0.3
334,479 - BACOVA_02851 0.60 -0.5
334,479 - BACOVA_02851 0.60 -0.4
334,528 + BACOVA_02851 0.62 -1.4
334,547 + BACOVA_02851 0.63 -0.9
334,547 + BACOVA_02851 0.63 -0.9
334,548 - BACOVA_02851 0.63 -0.2
334,548 - BACOVA_02851 0.63 +0.6
334,548 - BACOVA_02851 0.63 -0.0
334,557 - BACOVA_02851 0.63 -0.5
334,575 - BACOVA_02851 0.64 +0.0
334,655 - BACOVA_02851 0.68 -0.0
334,678 + BACOVA_02851 0.69 -0.7
334,678 + BACOVA_02851 0.69 +0.3
334,679 - BACOVA_02851 0.69 +0.5
334,716 - BACOVA_02851 0.70 +1.3
334,716 - BACOVA_02851 0.70 -0.9
334,750 - BACOVA_02851 0.72 +0.7
334,788 - BACOVA_02851 0.73 -0.5
334,807 + BACOVA_02851 0.74 +1.4
334,842 - BACOVA_02851 0.76 +0.7
334,914 + BACOVA_02851 0.79 -0.2
334,915 - BACOVA_02851 0.79 -0.3
334,935 + BACOVA_02851 0.80 +0.1
334,940 + BACOVA_02851 0.80 -0.9
334,941 - BACOVA_02851 0.80 +0.3
334,949 + BACOVA_02851 0.80 -0.4
334,950 - BACOVA_02851 0.80 +0.5
334,958 + BACOVA_02851 0.81 +0.1
334,959 - BACOVA_02851 0.81 +0.3
334,968 + BACOVA_02851 0.81 +0.3
334,969 - BACOVA_02851 0.81 -0.5
334,970 + BACOVA_02851 0.81 -1.5
334,970 + BACOVA_02851 0.81 -0.9
334,971 - BACOVA_02851 0.81 +0.1
334,971 - BACOVA_02851 0.81 -0.2
334,971 - BACOVA_02851 0.81 +0.5
334,972 + BACOVA_02851 0.81 +0.8
334,973 - BACOVA_02851 0.81 +1.8
334,976 - BACOVA_02851 0.81 -1.0
335,010 - BACOVA_02851 0.83 +0.4
335,055 + BACOVA_02851 0.85 -0.2
335,126 + BACOVA_02851 0.88 -1.5
335,126 + BACOVA_02851 0.88 +0.3
335,126 + BACOVA_02851 0.88 -0.1
335,127 - BACOVA_02851 0.88 -0.9
335,158 + BACOVA_02851 0.89 +0.1
335,159 - BACOVA_02851 0.89 +0.1
335,170 + BACOVA_02851 0.90 +1.2
335,201 - -0.5
335,210 + -1.1
335,210 + -0.2
335,211 - -0.4
335,217 - +0.6
335,217 - -0.1
335,232 + +0.3
335,233 - -1.3
335,240 + +1.6
335,262 - +0.6
335,276 - -0.9
335,344 - +0.1
335,344 - +0.4
335,346 - +0.6
335,346 - +1.1
335,352 - +0.1
335,352 - +0.6
335,403 - +1.1
335,548 - +0.8
335,548 - +0.3
335,572 + +0.7
335,572 + -0.5
335,572 + -0.5
335,572 + +2.6
335,573 - +0.7
335,594 - -0.0
335,594 - -0.5
335,648 + +1.1
335,663 - BACOVA_02852 0.11 +0.8
335,696 + BACOVA_02852 0.12 -0.9
335,704 - BACOVA_02852 0.12 -0.1
335,706 + BACOVA_02852 0.13 -0.5
335,706 + BACOVA_02852 0.13 +0.4
335,708 + BACOVA_02852 0.13 -0.8
335,709 - BACOVA_02852 0.13 -0.0
335,709 - BACOVA_02852 0.13 +1.8
335,751 + BACOVA_02852 0.15 +0.3
335,761 - BACOVA_02852 0.15 +1.1
335,783 - BACOVA_02852 0.16 -0.1
335,808 + BACOVA_02852 0.17 -0.2
335,809 - BACOVA_02852 0.17 +0.0
335,866 - BACOVA_02852 0.20 -0.2
335,885 - BACOVA_02852 0.21 -0.1
335,914 + BACOVA_02852 0.22 -0.6
335,914 + BACOVA_02852 0.22 -0.5
335,915 - BACOVA_02852 0.22 -0.6
335,922 + BACOVA_02852 0.23 +0.1
335,923 - BACOVA_02852 0.23 -2.3
335,969 + BACOVA_02852 0.25 +0.7
335,970 - BACOVA_02852 0.25 +0.6
335,997 + BACOVA_02852 0.26 -1.3
336,034 + BACOVA_02852 0.28 -1.9
336,034 + BACOVA_02852 0.28 -0.8
336,035 - BACOVA_02852 0.28 +0.2
336,036 + BACOVA_02852 0.28 +0.3
336,036 + BACOVA_02852 0.28 -0.4
336,036 + BACOVA_02852 0.28 +0.2
336,036 + BACOVA_02852 0.28 -0.1
336,037 - BACOVA_02852 0.28 +0.7
336,037 - BACOVA_02852 0.28 +1.1
336,037 - BACOVA_02852 0.28 -0.7
336,060 - BACOVA_02852 0.29 +0.0
336,073 - BACOVA_02852 0.30 +0.1
336,073 - BACOVA_02852 0.30 -0.3
336,075 + BACOVA_02852 0.30 +0.7
336,075 + BACOVA_02852 0.30 -0.8
336,075 + BACOVA_02852 0.30 -0.3
336,076 - BACOVA_02852 0.30 -0.9
336,076 - BACOVA_02852 0.30 -1.5
336,102 - BACOVA_02852 0.31 +1.6
336,152 + BACOVA_02852 0.34 +0.3
336,181 + BACOVA_02852 0.35 -0.7
336,201 + BACOVA_02852 0.36 +1.4
336,234 + BACOVA_02852 0.38 +0.9
336,260 + BACOVA_02852 0.39 +0.2
336,261 - BACOVA_02852 0.39 -0.4
336,261 - BACOVA_02852 0.39 +4.1
336,261 - BACOVA_02852 0.39 +0.6
336,261 - BACOVA_02852 0.39 -0.9
336,265 - BACOVA_02852 0.39 -0.8
336,296 + BACOVA_02852 0.41 -1.1
336,333 + BACOVA_02852 0.42 -0.6
336,342 + BACOVA_02852 0.43 -1.9
336,363 - BACOVA_02852 0.44 -1.0
336,408 + BACOVA_02852 0.46 -0.5
336,409 - BACOVA_02852 0.46 -1.0
336,409 - BACOVA_02852 0.46 +1.2
336,415 + BACOVA_02852 0.46 +1.1
336,450 + BACOVA_02852 0.48 -1.3
336,451 - BACOVA_02852 0.48 -0.2
336,533 - BACOVA_02852 0.52 +1.5
336,565 - BACOVA_02852 0.53 +0.0
336,565 - BACOVA_02852 0.53 -0.1
336,585 + BACOVA_02852 0.54 +0.1
336,585 + BACOVA_02852 0.54 +0.5
336,586 - BACOVA_02852 0.54 -0.5
336,586 - BACOVA_02852 0.54 -0.8
336,638 - BACOVA_02852 0.57 +0.9
336,638 - BACOVA_02852 0.57 -0.2
336,645 - BACOVA_02852 0.57 -0.1
336,645 - BACOVA_02852 0.57 -1.2
336,645 - BACOVA_02852 0.57 -0.1
336,645 - BACOVA_02852 0.57 +0.1
336,689 + BACOVA_02852 0.59 -0.2
336,798 + BACOVA_02852 0.64 +0.2
336,799 - BACOVA_02852 0.64 -0.4
336,799 - BACOVA_02852 0.64 -1.3
336,822 - BACOVA_02852 0.65 -0.2
336,871 + BACOVA_02852 0.68 +0.1
336,872 - BACOVA_02852 0.68 -0.4
336,874 - BACOVA_02852 0.68 +0.4
336,902 + BACOVA_02852 0.69 +0.7
336,929 - BACOVA_02852 0.71 -0.2
336,929 - BACOVA_02852 0.71 +0.0
336,944 - BACOVA_02852 0.71 -0.7
336,969 + BACOVA_02852 0.72 -0.1
336,969 + BACOVA_02852 0.72 -0.8
336,971 + BACOVA_02852 0.72 +0.2
336,971 + BACOVA_02852 0.72 +0.1
336,973 + BACOVA_02852 0.73 +0.7
336,974 - BACOVA_02852 0.73 +0.7
336,985 - BACOVA_02852 0.73 -0.4
336,985 - BACOVA_02852 0.73 -0.3
337,033 - BACOVA_02852 0.75 -0.0
337,125 - BACOVA_02852 0.80 -0.6
337,288 - BACOVA_02852 0.88 -1.7
337,300 - BACOVA_02852 0.88 -0.1
337,330 + BACOVA_02852 0.89 +0.2
337,355 + +0.2
337,355 + -1.0
337,402 - -0.2
337,402 - -0.3
337,404 + -1.1
337,409 + +0.0
337,501 + -0.0
337,502 - -0.9
337,527 - +0.6
337,560 - -0.6
337,564 + -0.3
337,568 - -0.1
337,568 - +0.3
337,610 - -0.2
337,610 - -1.9
337,610 - -1.2
337,615 - -0.5
337,616 + +0.1
337,644 + -1.5
337,645 - -1.5
337,658 + -0.2
337,659 - -1.5
337,664 - -2.6
337,965 + BACOVA_02853 0.39 -1.1
338,032 + BACOVA_02853 0.47 -1.3
338,077 - BACOVA_02853 0.53 -2.1
338,081 - BACOVA_02853 0.53 -1.4
338,081 - BACOVA_02853 0.53 -1.3
338,084 - BACOVA_02853 0.54 -1.9
338,086 + BACOVA_02853 0.54 -2.1
338,118 - BACOVA_02853 0.58 -2.1
338,251 + BACOVA_02853 0.75 -1.5
338,251 + BACOVA_02853 0.75 -1.9
338,252 - BACOVA_02853 0.76 -2.1
338,252 - BACOVA_02853 0.76 -0.9
338,254 + BACOVA_02853 0.76 -1.6
338,322 + BACOVA_02853 0.85 -0.8
338,324 + BACOVA_02853 0.85 -1.9
338,326 + BACOVA_02853 0.85 -2.8
338,326 + BACOVA_02853 0.85 -2.7
338,327 - BACOVA_02853 0.85 -1.8
338,383 - +0.1
338,389 + +0.1
338,417 - -1.4
338,417 - -2.2
338,435 + +0.1
338,444 - -0.4
338,462 + -0.0
338,463 - +0.3
338,476 - -0.2
338,479 - -0.3
338,496 + -0.9
338,497 - +0.0
338,497 - -0.1
338,529 - -1.7
338,531 - -1.3
338,537 + -0.5
338,542 + +0.3
338,543 - +0.2

Or see this region's nucleotide sequence