Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00543

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00540 and BACOVA_00541 are separated by 126 nucleotidesBACOVA_00541 and BACOVA_00542 are separated by 143 nucleotidesBACOVA_00542 and BACOVA_00543 are separated by 17 nucleotidesBACOVA_00543 and BACOVA_00544 are separated by 191 nucleotidesBACOVA_00544 and BACOVA_00545 overlap by 4 nucleotidesBACOVA_00545 and BACOVA_00546 are separated by 352 nucleotides BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675 _00540 BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903 _00541 BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547 _00542 BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080 _00543 BACOVA_00544: BACOVA_00544 - hypothetical protein, at 42,272 to 42,379 _00544 BACOVA_00545: BACOVA_00545 - hypothetical protein, at 42,376 to 42,621 _00545 BACOVA_00546: BACOVA_00546 - hypothetical protein, at 42,974 to 43,198 _00546 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1 2at 40.576 kb on + strandat 40.576 kb on + strandat 40.617 kb on + strandat 40.621 kb on + strandat 40.621 kb on + strandat 40.621 kb on + strandat 40.622 kb on - strandat 40.624 kb on + strandat 40.624 kb on + strandat 40.634 kb on + strandat 40.661 kb on - strandat 40.661 kb on - strandat 40.661 kb on - strandat 40.664 kb on + strandat 40.678 kb on - strandat 40.777 kb on + strandat 40.778 kb on - strandat 40.960 kb on + strandat 40.964 kb on + strandat 40.970 kb on + strandat 41.158 kb on + strand, within BACOVA_00542at 41.298 kb on + strand, within BACOVA_00542at 41.387 kb on + strand, within BACOVA_00542at 41.390 kb on + strand, within BACOVA_00542at 41.514 kb on + strandat 41.514 kb on + strandat 41.566 kb on + strandat 41.789 kb on + strand, within BACOVA_00543at 41.982 kb on + strand, within BACOVA_00543at 42.208 kb on + strandat 42.275 kb on + strandat 42.309 kb on + strand, within BACOVA_00544at 42.427 kb on + strand, within BACOVA_00545at 42.452 kb on + strand, within BACOVA_00545at 42.468 kb on - strand, within BACOVA_00545at 42.478 kb on + strand, within BACOVA_00545at 42.513 kb on + strand, within BACOVA_00545at 42.524 kb on + strand, within BACOVA_00545at 42.525 kb on - strand, within BACOVA_00545at 42.571 kb on + strand, within BACOVA_00545at 42.587 kb on + strand, within BACOVA_00545at 42.645 kb on + strandat 42.651 kb on + strandat 42.670 kb on + strandat 42.672 kb on + strandat 42.687 kb on + strandat 42.687 kb on + strandat 42.691 kb on + strandat 42.691 kb on + strandat 42.713 kb on - strandat 42.730 kb on - strandat 42.734 kb on - strandat 42.736 kb on - strandat 42.769 kb on - strandat 42.769 kb on - strandat 42.813 kb on + strandat 42.878 kb on + strandat 42.905 kb on + strandat 42.905 kb on + strandat 42.909 kb on + strandat 42.909 kb on + strandat 42.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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40,576 + +0.5
40,576 + +0.1
40,617 + -0.9
40,621 + -0.1
40,621 + +0.9
40,621 + -0.1
40,622 - +1.5
40,624 + -0.9
40,624 + -1.6
40,634 + -1.0
40,661 - +0.6
40,661 - -0.0
40,661 - +0.3
40,664 + -0.1
40,678 - +0.6
40,777 + -0.3
40,778 - -0.7
40,960 + -0.6
40,964 + -0.3
40,970 + +0.9
41,158 + BACOVA_00542 0.22 -0.9
41,298 + BACOVA_00542 0.50 -0.7
41,387 + BACOVA_00542 0.68 -1.4
41,390 + BACOVA_00542 0.68 +1.9
41,514 + +1.6
41,514 + -0.2
41,566 + +0.7
41,789 + BACOVA_00543 0.43 -1.1
41,982 + BACOVA_00543 0.81 +1.3
42,208 + +0.1
42,275 + +0.1
42,309 + BACOVA_00544 0.34 -0.4
42,427 + BACOVA_00545 0.21 -0.3
42,452 + BACOVA_00545 0.31 +0.3
42,468 - BACOVA_00545 0.37 -0.7
42,478 + BACOVA_00545 0.41 -0.8
42,513 + BACOVA_00545 0.56 -0.7
42,524 + BACOVA_00545 0.60 +0.2
42,525 - BACOVA_00545 0.61 -0.1
42,571 + BACOVA_00545 0.79 -0.1
42,587 + BACOVA_00545 0.86 -1.9
42,645 + -1.0
42,651 + +0.5
42,670 + -0.8
42,672 + +0.9
42,687 + -0.2
42,687 + -0.0
42,691 + +0.9
42,691 + -0.7
42,713 - -0.5
42,730 - +0.5
42,734 - +1.0
42,736 - -0.7
42,769 - -0.8
42,769 - -0.6
42,813 + -0.3
42,878 + -1.7
42,905 + +0.3
42,905 + +1.6
42,909 + -0.5
42,909 + -0.4
42,934 + -0.0

Or see this region's nucleotide sequence