Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05555 and BACOVA_05556 are separated by 337 nucleotides BACOVA_05556 and BACOVA_05557 are separated by 173 nucleotides
BACOVA_05555: BACOVA_05555 - O-succinylbenzoic acid--CoA ligase, at 1,067,645 to 1,068,787
_05555
BACOVA_05556: BACOVA_05556 - RNA polymerase sigma-70 factor, at 1,069,125 to 1,069,688
_05556
BACOVA_05557: BACOVA_05557 - BNR/Asp-box repeat protein, at 1,069,862 to 1,071,853
_05557
Position (kb)
1069
1070 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1068.143 kb on - strand, within BACOVA_05555 at 1068.242 kb on - strand, within BACOVA_05555 at 1068.285 kb on - strand, within BACOVA_05555 at 1068.328 kb on + strand, within BACOVA_05555 at 1068.328 kb on + strand, within BACOVA_05555 at 1068.329 kb on - strand, within BACOVA_05555 at 1068.329 kb on - strand, within BACOVA_05555 at 1068.329 kb on - strand, within BACOVA_05555 at 1068.334 kb on - strand, within BACOVA_05555 at 1068.391 kb on + strand, within BACOVA_05555 at 1068.391 kb on + strand, within BACOVA_05555 at 1068.392 kb on - strand, within BACOVA_05555 at 1068.392 kb on - strand, within BACOVA_05555 at 1068.396 kb on - strand, within BACOVA_05555 at 1068.499 kb on + strand, within BACOVA_05555 at 1068.521 kb on - strand, within BACOVA_05555 at 1068.562 kb on - strand, within BACOVA_05555 at 1068.565 kb on - strand, within BACOVA_05555 at 1068.606 kb on + strand, within BACOVA_05555 at 1068.643 kb on + strand, within BACOVA_05555 at 1068.643 kb on + strand, within BACOVA_05555 at 1068.644 kb on + strand, within BACOVA_05555 at 1068.645 kb on + strand, within BACOVA_05555 at 1068.645 kb on + strand, within BACOVA_05555 at 1068.645 kb on + strand, within BACOVA_05555 at 1068.646 kb on - strand, within BACOVA_05555 at 1068.646 kb on - strand, within BACOVA_05555 at 1068.823 kb on - strand at 1068.863 kb on + strand at 1068.866 kb on - strand at 1068.875 kb on + strand at 1068.877 kb on + strand at 1068.878 kb on - strand at 1068.878 kb on - strand at 1068.878 kb on - strand at 1068.878 kb on - strand at 1068.883 kb on - strand at 1068.894 kb on + strand at 1068.899 kb on - strand at 1068.909 kb on + strand at 1068.917 kb on - strand at 1068.917 kb on - strand at 1068.924 kb on + strand at 1068.924 kb on + strand at 1068.987 kb on + strand at 1068.988 kb on - strand at 1068.988 kb on - strand at 1068.992 kb on + strand at 1069.008 kb on + strand at 1069.009 kb on - strand at 1069.023 kb on + strand at 1069.023 kb on + strand at 1069.023 kb on + strand at 1069.024 kb on - strand at 1069.040 kb on + strand at 1069.041 kb on - strand at 1069.056 kb on + strand at 1069.060 kb on + strand at 1069.061 kb on - strand at 1069.061 kb on - strand at 1069.061 kb on - strand at 1069.061 kb on - strand at 1069.061 kb on - strand at 1069.063 kb on - strand at 1069.063 kb on - strand at 1069.065 kb on - strand at 1069.070 kb on - strand at 1069.095 kb on + strand at 1069.095 kb on + strand at 1069.097 kb on + strand at 1069.098 kb on - strand at 1069.098 kb on - strand at 1069.149 kb on + strand at 1069.152 kb on + strand at 1069.152 kb on + strand at 1069.161 kb on - strand at 1069.161 kb on - strand at 1069.162 kb on + strand at 1069.162 kb on + strand at 1069.163 kb on - strand at 1069.163 kb on - strand at 1069.178 kb on + strand at 1069.217 kb on + strand, within BACOVA_05556 at 1069.257 kb on - strand, within BACOVA_05556 at 1069.330 kb on + strand, within BACOVA_05556 at 1069.330 kb on + strand, within BACOVA_05556 at 1069.331 kb on - strand, within BACOVA_05556 at 1069.360 kb on + strand, within BACOVA_05556 at 1069.361 kb on - strand, within BACOVA_05556 at 1069.361 kb on - strand, within BACOVA_05556 at 1069.362 kb on + strand, within BACOVA_05556 at 1069.362 kb on + strand, within BACOVA_05556 at 1069.362 kb on + strand, within BACOVA_05556 at 1069.362 kb on + strand, within BACOVA_05556 at 1069.362 kb on + strand, within BACOVA_05556 at 1069.362 kb on + strand, within BACOVA_05556 at 1069.363 kb on - strand, within BACOVA_05556 at 1069.363 kb on - strand, within BACOVA_05556 at 1069.363 kb on - strand, within BACOVA_05556 at 1069.364 kb on + strand, within BACOVA_05556 at 1069.364 kb on + strand, within BACOVA_05556 at 1069.365 kb on - strand, within BACOVA_05556 at 1069.365 kb on - strand, within BACOVA_05556 at 1069.365 kb on - strand, within BACOVA_05556 at 1069.405 kb on - strand, within BACOVA_05556 at 1069.418 kb on - strand, within BACOVA_05556 at 1069.429 kb on + strand, within BACOVA_05556 at 1069.430 kb on - strand, within BACOVA_05556 at 1069.430 kb on - strand, within BACOVA_05556 at 1069.483 kb on + strand, within BACOVA_05556 at 1069.483 kb on + strand, within BACOVA_05556 at 1069.484 kb on - strand, within BACOVA_05556 at 1069.488 kb on + strand, within BACOVA_05556 at 1069.488 kb on + strand, within BACOVA_05556 at 1069.539 kb on + strand, within BACOVA_05556 at 1069.551 kb on + strand, within BACOVA_05556 at 1069.552 kb on - strand, within BACOVA_05556 at 1069.607 kb on - strand, within BACOVA_05556 at 1069.624 kb on + strand, within BACOVA_05556 at 1069.624 kb on + strand, within BACOVA_05556 at 1069.625 kb on - strand, within BACOVA_05556 at 1069.627 kb on + strand, within BACOVA_05556 at 1069.628 kb on - strand, within BACOVA_05556 at 1069.662 kb on - strand at 1069.662 kb on - strand at 1069.704 kb on + strand at 1069.704 kb on + strand at 1069.705 kb on - strand at 1069.705 kb on - strand at 1069.726 kb on + strand at 1069.726 kb on + strand at 1069.733 kb on + strand at 1069.738 kb on + strand at 1069.824 kb on + strand at 1069.825 kb on - strand at 1069.837 kb on + strand at 1069.840 kb on + strand at 1069.840 kb on + strand at 1069.843 kb on - strand at 1069.844 kb on + strand at 1069.845 kb on - strand at 1069.846 kb on + strand at 1069.846 kb on + strand at 1069.847 kb on - strand at 1069.908 kb on + strand at 1070.064 kb on + strand, within BACOVA_05557 at 1070.064 kb on + strand, within BACOVA_05557 at 1070.065 kb on - strand, within BACOVA_05557 at 1070.065 kb on - strand, within BACOVA_05557 at 1070.250 kb on - strand, within BACOVA_05557 at 1070.270 kb on + strand, within BACOVA_05557 at 1070.270 kb on + strand, within BACOVA_05557 at 1070.271 kb on - strand, within BACOVA_05557 at 1070.271 kb on - strand, within BACOVA_05557 at 1070.271 kb on - strand, within BACOVA_05557 at 1070.278 kb on - strand, within BACOVA_05557 at 1070.285 kb on - strand, within BACOVA_05557 at 1070.309 kb on + strand, within BACOVA_05557 at 1070.399 kb on - strand, within BACOVA_05557 at 1070.435 kb on + strand, within BACOVA_05557 at 1070.435 kb on + strand, within BACOVA_05557 at 1070.560 kb on + strand, within BACOVA_05557 at 1070.561 kb on - strand, within BACOVA_05557 at 1070.671 kb on - strand, within BACOVA_05557 at 1070.684 kb on - strand, within BACOVA_05557 at 1070.686 kb on - strand, within BACOVA_05557
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 1,068,143 - BACOVA_05555 0.44 -2.6 1,068,242 - BACOVA_05555 0.52 -1.3 1,068,285 - BACOVA_05555 0.56 +0.2 1,068,328 + BACOVA_05555 0.60 -3.8 1,068,328 + BACOVA_05555 0.60 -0.6 1,068,329 - BACOVA_05555 0.60 -1.0 1,068,329 - BACOVA_05555 0.60 -1.6 1,068,329 - BACOVA_05555 0.60 -0.9 1,068,334 - BACOVA_05555 0.60 -1.0 1,068,391 + BACOVA_05555 0.65 -1.6 1,068,391 + BACOVA_05555 0.65 -3.2 1,068,392 - BACOVA_05555 0.65 -2.0 1,068,392 - BACOVA_05555 0.65 -2.3 1,068,396 - BACOVA_05555 0.66 -2.4 1,068,499 + BACOVA_05555 0.75 -0.8 1,068,521 - BACOVA_05555 0.77 +1.0 1,068,562 - BACOVA_05555 0.80 -2.6 1,068,565 - BACOVA_05555 0.80 -1.0 1,068,606 + BACOVA_05555 0.84 -3.6 1,068,643 + BACOVA_05555 0.87 -2.0 1,068,643 + BACOVA_05555 0.87 -3.6 1,068,644 + BACOVA_05555 0.87 -1.3 1,068,645 + BACOVA_05555 0.87 -2.2 1,068,645 + BACOVA_05555 0.87 -1.0 1,068,645 + BACOVA_05555 0.87 -2.3 1,068,646 - BACOVA_05555 0.88 -1.3 1,068,646 - BACOVA_05555 0.88 -1.3 1,068,823 - -0.3 1,068,863 + -0.6 1,068,866 - -0.9 1,068,875 + -0.7 1,068,877 + -1.1 1,068,878 - -1.6 1,068,878 - -0.8 1,068,878 - -0.7 1,068,878 - +0.0 1,068,883 - +0.4 1,068,894 + -0.3 1,068,899 - +0.6 1,068,909 + -0.6 1,068,917 - +0.4 1,068,917 - +1.8 1,068,924 + +0.3 1,068,924 + +0.5 1,068,987 + -1.8 1,068,988 - +0.3 1,068,988 - +0.4 1,068,992 + +1.0 1,069,008 + -1.2 1,069,009 - +0.3 1,069,023 + +1.0 1,069,023 + -0.6 1,069,023 + +0.0 1,069,024 - +0.7 1,069,040 + +0.5 1,069,041 - -1.1 1,069,056 + +0.6 1,069,060 + -0.4 1,069,061 - +1.4 1,069,061 - +0.3 1,069,061 - -0.1 1,069,061 - -2.3 1,069,061 - +0.0 1,069,063 - -0.3 1,069,063 - -0.2 1,069,065 - +1.5 1,069,070 - -0.2 1,069,095 + -0.2 1,069,095 + -0.4 1,069,097 + +2.2 1,069,098 - +0.4 1,069,098 - +0.7 1,069,149 + -1.0 1,069,152 + -0.7 1,069,152 + +0.9 1,069,161 - -0.3 1,069,161 - +0.0 1,069,162 + +1.0 1,069,162 + -1.8 1,069,163 - -0.8 1,069,163 - -0.6 1,069,178 + +1.4 1,069,217 + BACOVA_05556 0.16 -1.8 1,069,257 - BACOVA_05556 0.23 -0.5 1,069,330 + BACOVA_05556 0.36 -1.0 1,069,330 + BACOVA_05556 0.36 -0.6 1,069,331 - BACOVA_05556 0.37 -0.6 1,069,360 + BACOVA_05556 0.42 -0.2 1,069,361 - BACOVA_05556 0.42 +0.4 1,069,361 - BACOVA_05556 0.42 -0.8 1,069,362 + BACOVA_05556 0.42 +0.1 1,069,362 + BACOVA_05556 0.42 -0.9 1,069,362 + BACOVA_05556 0.42 -0.2 1,069,362 + BACOVA_05556 0.42 -2.3 1,069,362 + BACOVA_05556 0.42 -1.5 1,069,362 + BACOVA_05556 0.42 +1.3 1,069,363 - BACOVA_05556 0.42 -2.2 1,069,363 - BACOVA_05556 0.42 +0.1 1,069,363 - BACOVA_05556 0.42 -0.9 1,069,364 + BACOVA_05556 0.42 +0.8 1,069,364 + BACOVA_05556 0.42 +0.4 1,069,365 - BACOVA_05556 0.43 -0.3 1,069,365 - BACOVA_05556 0.43 +0.8 1,069,365 - BACOVA_05556 0.43 -0.0 1,069,405 - BACOVA_05556 0.50 +0.2 1,069,418 - BACOVA_05556 0.52 +0.7 1,069,429 + BACOVA_05556 0.54 +0.0 1,069,430 - BACOVA_05556 0.54 -1.3 1,069,430 - BACOVA_05556 0.54 -1.5 1,069,483 + BACOVA_05556 0.63 +0.6 1,069,483 + BACOVA_05556 0.63 +0.8 1,069,484 - BACOVA_05556 0.64 +0.1 1,069,488 + BACOVA_05556 0.64 +2.3 1,069,488 + BACOVA_05556 0.64 +0.5 1,069,539 + BACOVA_05556 0.73 +0.1 1,069,551 + BACOVA_05556 0.76 -0.3 1,069,552 - BACOVA_05556 0.76 +1.2 1,069,607 - BACOVA_05556 0.85 -1.0 1,069,624 + BACOVA_05556 0.88 +0.2 1,069,624 + BACOVA_05556 0.88 -0.6 1,069,625 - BACOVA_05556 0.89 +0.3 1,069,627 + BACOVA_05556 0.89 +1.6 1,069,628 - BACOVA_05556 0.89 +1.0 1,069,662 - -0.6 1,069,662 - +1.0 1,069,704 + +0.2 1,069,704 + -0.5 1,069,705 - -0.1 1,069,705 - -0.8 1,069,726 + -1.0 1,069,726 + -1.0 1,069,733 + -2.4 1,069,738 + -1.2 1,069,824 + +0.6 1,069,825 - -0.4 1,069,837 + +0.3 1,069,840 + -0.4 1,069,840 + -0.9 1,069,843 - +0.9 1,069,844 + -1.6 1,069,845 - -0.1 1,069,846 + -0.1 1,069,846 + -0.6 1,069,847 - +0.1 1,069,908 + -0.3 1,070,064 + BACOVA_05557 0.10 -0.4 1,070,064 + BACOVA_05557 0.10 -0.2 1,070,065 - BACOVA_05557 0.10 +0.4 1,070,065 - BACOVA_05557 0.10 +1.0 1,070,250 - BACOVA_05557 0.19 -2.6 1,070,270 + BACOVA_05557 0.20 -0.7 1,070,270 + BACOVA_05557 0.20 -0.4 1,070,271 - BACOVA_05557 0.21 +0.5 1,070,271 - BACOVA_05557 0.21 -1.0 1,070,271 - BACOVA_05557 0.21 -0.4 1,070,278 - BACOVA_05557 0.21 +0.3 1,070,285 - BACOVA_05557 0.21 -1.6 1,070,309 + BACOVA_05557 0.22 -1.6 1,070,399 - BACOVA_05557 0.27 -0.2 1,070,435 + BACOVA_05557 0.29 +1.4 1,070,435 + BACOVA_05557 0.29 +2.4 1,070,560 + BACOVA_05557 0.35 +0.3 1,070,561 - BACOVA_05557 0.35 +1.5 1,070,671 - BACOVA_05557 0.41 +0.4 1,070,684 - BACOVA_05557 0.41 +0.4 1,070,686 - BACOVA_05557 0.41 +0.0
Or see this region's nucleotide sequence