Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05556

Experiment: D-Galactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05555 and BACOVA_05556 are separated by 337 nucleotidesBACOVA_05556 and BACOVA_05557 are separated by 173 nucleotides BACOVA_05555: BACOVA_05555 - O-succinylbenzoic acid--CoA ligase, at 1,067,645 to 1,068,787 _05555 BACOVA_05556: BACOVA_05556 - RNA polymerase sigma-70 factor, at 1,069,125 to 1,069,688 _05556 BACOVA_05557: BACOVA_05557 - BNR/Asp-box repeat protein, at 1,069,862 to 1,071,853 _05557 Position (kb) 1069 1070Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1068.143 kb on - strand, within BACOVA_05555at 1068.242 kb on - strand, within BACOVA_05555at 1068.285 kb on - strand, within BACOVA_05555at 1068.328 kb on + strand, within BACOVA_05555at 1068.328 kb on + strand, within BACOVA_05555at 1068.329 kb on - strand, within BACOVA_05555at 1068.329 kb on - strand, within BACOVA_05555at 1068.329 kb on - strand, within BACOVA_05555at 1068.334 kb on - strand, within BACOVA_05555at 1068.391 kb on + strand, within BACOVA_05555at 1068.391 kb on + strand, within BACOVA_05555at 1068.392 kb on - strand, within BACOVA_05555at 1068.392 kb on - strand, within BACOVA_05555at 1068.396 kb on - strand, within BACOVA_05555at 1068.499 kb on + strand, within BACOVA_05555at 1068.521 kb on - strand, within BACOVA_05555at 1068.562 kb on - strand, within BACOVA_05555at 1068.565 kb on - strand, within BACOVA_05555at 1068.606 kb on + strand, within BACOVA_05555at 1068.643 kb on + strand, within BACOVA_05555at 1068.643 kb on + strand, within BACOVA_05555at 1068.644 kb on + strand, within BACOVA_05555at 1068.645 kb on + strand, within BACOVA_05555at 1068.645 kb on + strand, within BACOVA_05555at 1068.645 kb on + strand, within BACOVA_05555at 1068.646 kb on - strand, within BACOVA_05555at 1068.646 kb on - strand, within BACOVA_05555at 1068.823 kb on - strandat 1068.863 kb on + strandat 1068.866 kb on - strandat 1068.875 kb on + strandat 1068.877 kb on + strandat 1068.878 kb on - strandat 1068.878 kb on - strandat 1068.878 kb on - strandat 1068.878 kb on - strandat 1068.883 kb on - strandat 1068.894 kb on + strandat 1068.899 kb on - strandat 1068.909 kb on + strandat 1068.917 kb on - strandat 1068.917 kb on - strandat 1068.924 kb on + strandat 1068.924 kb on + strandat 1068.987 kb on + strandat 1068.988 kb on - strandat 1068.988 kb on - strandat 1068.992 kb on + strandat 1069.008 kb on + strandat 1069.009 kb on - strandat 1069.023 kb on + strandat 1069.023 kb on + strandat 1069.023 kb on + strandat 1069.024 kb on - strandat 1069.040 kb on + strandat 1069.041 kb on - strandat 1069.056 kb on + strandat 1069.060 kb on + strandat 1069.061 kb on - strandat 1069.061 kb on - strandat 1069.061 kb on - strandat 1069.061 kb on - strandat 1069.061 kb on - strandat 1069.063 kb on - strandat 1069.063 kb on - strandat 1069.065 kb on - strandat 1069.070 kb on - strandat 1069.095 kb on + strandat 1069.095 kb on + strandat 1069.097 kb on + strandat 1069.098 kb on - strandat 1069.098 kb on - strandat 1069.149 kb on + strandat 1069.152 kb on + strandat 1069.152 kb on + strandat 1069.161 kb on - strandat 1069.161 kb on - strandat 1069.162 kb on + strandat 1069.162 kb on + strandat 1069.163 kb on - strandat 1069.163 kb on - strandat 1069.178 kb on + strandat 1069.217 kb on + strand, within BACOVA_05556at 1069.257 kb on - strand, within BACOVA_05556at 1069.330 kb on + strand, within BACOVA_05556at 1069.330 kb on + strand, within BACOVA_05556at 1069.331 kb on - strand, within BACOVA_05556at 1069.360 kb on + strand, within BACOVA_05556at 1069.361 kb on - strand, within BACOVA_05556at 1069.361 kb on - strand, within BACOVA_05556at 1069.362 kb on + strand, within BACOVA_05556at 1069.362 kb on + strand, within BACOVA_05556at 1069.362 kb on + strand, within BACOVA_05556at 1069.362 kb on + strand, within BACOVA_05556at 1069.362 kb on + strand, within BACOVA_05556at 1069.362 kb on + strand, within BACOVA_05556at 1069.363 kb on - strand, within BACOVA_05556at 1069.363 kb on - strand, within BACOVA_05556at 1069.363 kb on - strand, within BACOVA_05556at 1069.364 kb on + strand, within BACOVA_05556at 1069.364 kb on + strand, within BACOVA_05556at 1069.365 kb on - strand, within BACOVA_05556at 1069.365 kb on - strand, within BACOVA_05556at 1069.365 kb on - strand, within BACOVA_05556at 1069.405 kb on - strand, within BACOVA_05556at 1069.418 kb on - strand, within BACOVA_05556at 1069.429 kb on + strand, within BACOVA_05556at 1069.430 kb on - strand, within BACOVA_05556at 1069.430 kb on - strand, within BACOVA_05556at 1069.483 kb on + strand, within BACOVA_05556at 1069.483 kb on + strand, within BACOVA_05556at 1069.484 kb on - strand, within BACOVA_05556at 1069.488 kb on + strand, within BACOVA_05556at 1069.488 kb on + strand, within BACOVA_05556at 1069.539 kb on + strand, within BACOVA_05556at 1069.551 kb on + strand, within BACOVA_05556at 1069.552 kb on - strand, within BACOVA_05556at 1069.607 kb on - strand, within BACOVA_05556at 1069.624 kb on + strand, within BACOVA_05556at 1069.624 kb on + strand, within BACOVA_05556at 1069.625 kb on - strand, within BACOVA_05556at 1069.627 kb on + strand, within BACOVA_05556at 1069.628 kb on - strand, within BACOVA_05556at 1069.662 kb on - strandat 1069.662 kb on - strandat 1069.704 kb on + strandat 1069.704 kb on + strandat 1069.705 kb on - strandat 1069.705 kb on - strandat 1069.726 kb on + strandat 1069.726 kb on + strandat 1069.733 kb on + strandat 1069.738 kb on + strandat 1069.824 kb on + strandat 1069.825 kb on - strandat 1069.837 kb on + strandat 1069.840 kb on + strandat 1069.840 kb on + strandat 1069.843 kb on - strandat 1069.844 kb on + strandat 1069.845 kb on - strandat 1069.846 kb on + strandat 1069.846 kb on + strandat 1069.847 kb on - strandat 1069.908 kb on + strandat 1070.064 kb on + strand, within BACOVA_05557at 1070.064 kb on + strand, within BACOVA_05557at 1070.065 kb on - strand, within BACOVA_05557at 1070.065 kb on - strand, within BACOVA_05557at 1070.250 kb on - strand, within BACOVA_05557at 1070.270 kb on + strand, within BACOVA_05557at 1070.270 kb on + strand, within BACOVA_05557at 1070.271 kb on - strand, within BACOVA_05557at 1070.271 kb on - strand, within BACOVA_05557at 1070.271 kb on - strand, within BACOVA_05557at 1070.278 kb on - strand, within BACOVA_05557at 1070.285 kb on - strand, within BACOVA_05557at 1070.309 kb on + strand, within BACOVA_05557at 1070.399 kb on - strand, within BACOVA_05557at 1070.435 kb on + strand, within BACOVA_05557at 1070.435 kb on + strand, within BACOVA_05557at 1070.560 kb on + strand, within BACOVA_05557at 1070.561 kb on - strand, within BACOVA_05557at 1070.671 kb on - strand, within BACOVA_05557at 1070.684 kb on - strand, within BACOVA_05557at 1070.686 kb on - strand, within BACOVA_05557

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
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1,068,143 - BACOVA_05555 0.44 -2.6
1,068,242 - BACOVA_05555 0.52 -1.3
1,068,285 - BACOVA_05555 0.56 +0.2
1,068,328 + BACOVA_05555 0.60 -3.8
1,068,328 + BACOVA_05555 0.60 -0.6
1,068,329 - BACOVA_05555 0.60 -1.0
1,068,329 - BACOVA_05555 0.60 -1.6
1,068,329 - BACOVA_05555 0.60 -0.9
1,068,334 - BACOVA_05555 0.60 -1.0
1,068,391 + BACOVA_05555 0.65 -1.6
1,068,391 + BACOVA_05555 0.65 -3.2
1,068,392 - BACOVA_05555 0.65 -2.0
1,068,392 - BACOVA_05555 0.65 -2.3
1,068,396 - BACOVA_05555 0.66 -2.4
1,068,499 + BACOVA_05555 0.75 -0.8
1,068,521 - BACOVA_05555 0.77 +1.0
1,068,562 - BACOVA_05555 0.80 -2.6
1,068,565 - BACOVA_05555 0.80 -1.0
1,068,606 + BACOVA_05555 0.84 -3.6
1,068,643 + BACOVA_05555 0.87 -2.0
1,068,643 + BACOVA_05555 0.87 -3.6
1,068,644 + BACOVA_05555 0.87 -1.3
1,068,645 + BACOVA_05555 0.87 -2.2
1,068,645 + BACOVA_05555 0.87 -1.0
1,068,645 + BACOVA_05555 0.87 -2.3
1,068,646 - BACOVA_05555 0.88 -1.3
1,068,646 - BACOVA_05555 0.88 -1.3
1,068,823 - -0.3
1,068,863 + -0.6
1,068,866 - -0.9
1,068,875 + -0.7
1,068,877 + -1.1
1,068,878 - -1.6
1,068,878 - -0.8
1,068,878 - -0.7
1,068,878 - +0.0
1,068,883 - +0.4
1,068,894 + -0.3
1,068,899 - +0.6
1,068,909 + -0.6
1,068,917 - +0.4
1,068,917 - +1.8
1,068,924 + +0.3
1,068,924 + +0.5
1,068,987 + -1.8
1,068,988 - +0.3
1,068,988 - +0.4
1,068,992 + +1.0
1,069,008 + -1.2
1,069,009 - +0.3
1,069,023 + +1.0
1,069,023 + -0.6
1,069,023 + +0.0
1,069,024 - +0.7
1,069,040 + +0.5
1,069,041 - -1.1
1,069,056 + +0.6
1,069,060 + -0.4
1,069,061 - +1.4
1,069,061 - +0.3
1,069,061 - -0.1
1,069,061 - -2.3
1,069,061 - +0.0
1,069,063 - -0.3
1,069,063 - -0.2
1,069,065 - +1.5
1,069,070 - -0.2
1,069,095 + -0.2
1,069,095 + -0.4
1,069,097 + +2.2
1,069,098 - +0.4
1,069,098 - +0.7
1,069,149 + -1.0
1,069,152 + -0.7
1,069,152 + +0.9
1,069,161 - -0.3
1,069,161 - +0.0
1,069,162 + +1.0
1,069,162 + -1.8
1,069,163 - -0.8
1,069,163 - -0.6
1,069,178 + +1.4
1,069,217 + BACOVA_05556 0.16 -1.8
1,069,257 - BACOVA_05556 0.23 -0.5
1,069,330 + BACOVA_05556 0.36 -1.0
1,069,330 + BACOVA_05556 0.36 -0.6
1,069,331 - BACOVA_05556 0.37 -0.6
1,069,360 + BACOVA_05556 0.42 -0.2
1,069,361 - BACOVA_05556 0.42 +0.4
1,069,361 - BACOVA_05556 0.42 -0.8
1,069,362 + BACOVA_05556 0.42 +0.1
1,069,362 + BACOVA_05556 0.42 -0.9
1,069,362 + BACOVA_05556 0.42 -0.2
1,069,362 + BACOVA_05556 0.42 -2.3
1,069,362 + BACOVA_05556 0.42 -1.5
1,069,362 + BACOVA_05556 0.42 +1.3
1,069,363 - BACOVA_05556 0.42 -2.2
1,069,363 - BACOVA_05556 0.42 +0.1
1,069,363 - BACOVA_05556 0.42 -0.9
1,069,364 + BACOVA_05556 0.42 +0.8
1,069,364 + BACOVA_05556 0.42 +0.4
1,069,365 - BACOVA_05556 0.43 -0.3
1,069,365 - BACOVA_05556 0.43 +0.8
1,069,365 - BACOVA_05556 0.43 -0.0
1,069,405 - BACOVA_05556 0.50 +0.2
1,069,418 - BACOVA_05556 0.52 +0.7
1,069,429 + BACOVA_05556 0.54 +0.0
1,069,430 - BACOVA_05556 0.54 -1.3
1,069,430 - BACOVA_05556 0.54 -1.5
1,069,483 + BACOVA_05556 0.63 +0.6
1,069,483 + BACOVA_05556 0.63 +0.8
1,069,484 - BACOVA_05556 0.64 +0.1
1,069,488 + BACOVA_05556 0.64 +2.3
1,069,488 + BACOVA_05556 0.64 +0.5
1,069,539 + BACOVA_05556 0.73 +0.1
1,069,551 + BACOVA_05556 0.76 -0.3
1,069,552 - BACOVA_05556 0.76 +1.2
1,069,607 - BACOVA_05556 0.85 -1.0
1,069,624 + BACOVA_05556 0.88 +0.2
1,069,624 + BACOVA_05556 0.88 -0.6
1,069,625 - BACOVA_05556 0.89 +0.3
1,069,627 + BACOVA_05556 0.89 +1.6
1,069,628 - BACOVA_05556 0.89 +1.0
1,069,662 - -0.6
1,069,662 - +1.0
1,069,704 + +0.2
1,069,704 + -0.5
1,069,705 - -0.1
1,069,705 - -0.8
1,069,726 + -1.0
1,069,726 + -1.0
1,069,733 + -2.4
1,069,738 + -1.2
1,069,824 + +0.6
1,069,825 - -0.4
1,069,837 + +0.3
1,069,840 + -0.4
1,069,840 + -0.9
1,069,843 - +0.9
1,069,844 + -1.6
1,069,845 - -0.1
1,069,846 + -0.1
1,069,846 + -0.6
1,069,847 - +0.1
1,069,908 + -0.3
1,070,064 + BACOVA_05557 0.10 -0.4
1,070,064 + BACOVA_05557 0.10 -0.2
1,070,065 - BACOVA_05557 0.10 +0.4
1,070,065 - BACOVA_05557 0.10 +1.0
1,070,250 - BACOVA_05557 0.19 -2.6
1,070,270 + BACOVA_05557 0.20 -0.7
1,070,270 + BACOVA_05557 0.20 -0.4
1,070,271 - BACOVA_05557 0.21 +0.5
1,070,271 - BACOVA_05557 0.21 -1.0
1,070,271 - BACOVA_05557 0.21 -0.4
1,070,278 - BACOVA_05557 0.21 +0.3
1,070,285 - BACOVA_05557 0.21 -1.6
1,070,309 + BACOVA_05557 0.22 -1.6
1,070,399 - BACOVA_05557 0.27 -0.2
1,070,435 + BACOVA_05557 0.29 +1.4
1,070,435 + BACOVA_05557 0.29 +2.4
1,070,560 + BACOVA_05557 0.35 +0.3
1,070,561 - BACOVA_05557 0.35 +1.5
1,070,671 - BACOVA_05557 0.41 +0.4
1,070,684 - BACOVA_05557 0.41 +0.4
1,070,686 - BACOVA_05557 0.41 +0.0

Or see this region's nucleotide sequence