Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05517

Experiment: D-Galactose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_05516 and BACOVA_05517 are separated by 105 nucleotidesBACOVA_05517 and BACOVA_05518 are separated by 34 nucleotides BACOVA_05516: BACOVA_05516 - hypothetical protein, at 1,026,534 to 1,027,661 _05516 BACOVA_05517: BACOVA_05517 - glycosyltransferase, group 1 family protein, at 1,027,767 to 1,028,909 _05517 BACOVA_05518: BACOVA_05518 - glycosyltransferase, group 1 family protein, at 1,028,944 to 1,030,122 _05518 Position (kb) 1027 1028 1029Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1026.828 kb on - strand, within BACOVA_05516at 1026.859 kb on + strand, within BACOVA_05516at 1026.869 kb on + strand, within BACOVA_05516at 1026.870 kb on - strand, within BACOVA_05516at 1026.894 kb on - strand, within BACOVA_05516at 1026.894 kb on - strand, within BACOVA_05516at 1026.903 kb on - strand, within BACOVA_05516at 1026.914 kb on - strand, within BACOVA_05516at 1026.939 kb on + strand, within BACOVA_05516at 1026.940 kb on - strand, within BACOVA_05516at 1026.940 kb on - strand, within BACOVA_05516at 1026.941 kb on + strand, within BACOVA_05516at 1026.942 kb on - strand, within BACOVA_05516at 1026.952 kb on - strand, within BACOVA_05516at 1026.952 kb on - strand, within BACOVA_05516at 1026.966 kb on - strand, within BACOVA_05516at 1026.984 kb on - strand, within BACOVA_05516at 1027.001 kb on + strand, within BACOVA_05516at 1027.013 kb on + strand, within BACOVA_05516at 1027.013 kb on + strand, within BACOVA_05516at 1027.021 kb on + strand, within BACOVA_05516at 1027.022 kb on - strand, within BACOVA_05516at 1027.076 kb on - strand, within BACOVA_05516at 1027.106 kb on + strand, within BACOVA_05516at 1027.123 kb on + strand, within BACOVA_05516at 1027.127 kb on + strand, within BACOVA_05516at 1027.184 kb on - strand, within BACOVA_05516at 1027.210 kb on - strand, within BACOVA_05516at 1027.213 kb on + strand, within BACOVA_05516at 1027.265 kb on + strand, within BACOVA_05516at 1027.265 kb on + strand, within BACOVA_05516at 1027.266 kb on - strand, within BACOVA_05516at 1027.266 kb on - strand, within BACOVA_05516at 1027.295 kb on - strand, within BACOVA_05516at 1027.323 kb on - strand, within BACOVA_05516at 1027.339 kb on + strand, within BACOVA_05516at 1027.347 kb on + strand, within BACOVA_05516at 1027.348 kb on - strand, within BACOVA_05516at 1027.348 kb on - strand, within BACOVA_05516at 1027.372 kb on + strand, within BACOVA_05516at 1027.372 kb on + strand, within BACOVA_05516at 1027.372 kb on + strand, within BACOVA_05516at 1027.386 kb on - strand, within BACOVA_05516at 1027.406 kb on + strand, within BACOVA_05516at 1027.407 kb on - strand, within BACOVA_05516at 1027.438 kb on + strand, within BACOVA_05516at 1027.441 kb on - strand, within BACOVA_05516at 1027.508 kb on - strand, within BACOVA_05516at 1027.511 kb on - strand, within BACOVA_05516at 1027.517 kb on - strand, within BACOVA_05516at 1027.517 kb on - strand, within BACOVA_05516at 1027.540 kb on - strand, within BACOVA_05516at 1027.547 kb on + strand, within BACOVA_05516at 1027.548 kb on - strand, within BACOVA_05516at 1027.568 kb on - strandat 1027.568 kb on - strandat 1027.573 kb on - strandat 1027.573 kb on - strandat 1027.574 kb on + strandat 1027.575 kb on - strandat 1027.575 kb on - strandat 1027.585 kb on - strandat 1027.586 kb on + strandat 1027.608 kb on - strandat 1027.623 kb on + strandat 1027.656 kb on - strandat 1027.767 kb on - strandat 1027.878 kb on - strandat 1027.917 kb on + strand, within BACOVA_05517at 1027.920 kb on - strand, within BACOVA_05517at 1028.006 kb on - strand, within BACOVA_05517at 1028.048 kb on - strand, within BACOVA_05517at 1028.050 kb on - strand, within BACOVA_05517at 1028.050 kb on - strand, within BACOVA_05517at 1028.051 kb on + strand, within BACOVA_05517at 1028.052 kb on - strand, within BACOVA_05517at 1028.381 kb on - strand, within BACOVA_05517at 1028.433 kb on - strand, within BACOVA_05517at 1028.444 kb on + strand, within BACOVA_05517at 1028.523 kb on - strand, within BACOVA_05517at 1028.523 kb on - strand, within BACOVA_05517at 1028.523 kb on - strand, within BACOVA_05517at 1028.554 kb on - strand, within BACOVA_05517at 1028.558 kb on - strand, within BACOVA_05517at 1028.558 kb on - strand, within BACOVA_05517at 1028.606 kb on + strand, within BACOVA_05517at 1028.714 kb on - strand, within BACOVA_05517at 1028.735 kb on + strand, within BACOVA_05517at 1028.808 kb on - strandat 1028.808 kb on - strandat 1028.808 kb on - strandat 1028.811 kb on + strandat 1028.811 kb on + strandat 1028.834 kb on + strandat 1028.835 kb on - strandat 1028.882 kb on - strandat 1028.904 kb on - strandat 1028.908 kb on - strandat 1028.916 kb on - strandat 1028.916 kb on - strandat 1028.939 kb on - strandat 1028.975 kb on - strandat 1028.975 kb on - strandat 1029.006 kb on - strandat 1029.014 kb on - strandat 1029.045 kb on + strandat 1029.046 kb on - strandat 1029.051 kb on - strandat 1029.051 kb on - strandat 1029.060 kb on - strandat 1029.060 kb on - strandat 1029.064 kb on - strand, within BACOVA_05518at 1029.066 kb on + strand, within BACOVA_05518at 1029.067 kb on - strand, within BACOVA_05518at 1029.080 kb on + strand, within BACOVA_05518at 1029.081 kb on - strand, within BACOVA_05518at 1029.081 kb on - strand, within BACOVA_05518at 1029.087 kb on + strand, within BACOVA_05518at 1029.129 kb on - strand, within BACOVA_05518at 1029.129 kb on - strand, within BACOVA_05518at 1029.132 kb on + strand, within BACOVA_05518at 1029.133 kb on - strand, within BACOVA_05518at 1029.136 kb on - strand, within BACOVA_05518at 1029.136 kb on - strand, within BACOVA_05518at 1029.136 kb on - strand, within BACOVA_05518at 1029.139 kb on - strand, within BACOVA_05518at 1029.139 kb on - strand, within BACOVA_05518at 1029.139 kb on - strand, within BACOVA_05518at 1029.182 kb on - strand, within BACOVA_05518at 1029.201 kb on - strand, within BACOVA_05518at 1029.201 kb on - strand, within BACOVA_05518at 1029.204 kb on + strand, within BACOVA_05518at 1029.204 kb on + strand, within BACOVA_05518at 1029.206 kb on + strand, within BACOVA_05518at 1029.207 kb on - strand, within BACOVA_05518at 1029.213 kb on - strand, within BACOVA_05518at 1029.213 kb on - strand, within BACOVA_05518at 1029.248 kb on + strand, within BACOVA_05518at 1029.249 kb on - strand, within BACOVA_05518at 1029.249 kb on - strand, within BACOVA_05518at 1029.249 kb on - strand, within BACOVA_05518at 1029.256 kb on - strand, within BACOVA_05518at 1029.256 kb on - strand, within BACOVA_05518at 1029.261 kb on - strand, within BACOVA_05518at 1029.280 kb on - strand, within BACOVA_05518at 1029.282 kb on + strand, within BACOVA_05518at 1029.288 kb on - strand, within BACOVA_05518at 1029.288 kb on - strand, within BACOVA_05518at 1029.396 kb on - strand, within BACOVA_05518at 1029.396 kb on - strand, within BACOVA_05518at 1029.396 kb on - strand, within BACOVA_05518at 1029.440 kb on + strand, within BACOVA_05518at 1029.468 kb on + strand, within BACOVA_05518at 1029.496 kb on - strand, within BACOVA_05518at 1029.575 kb on - strand, within BACOVA_05518at 1029.585 kb on - strand, within BACOVA_05518at 1029.631 kb on - strand, within BACOVA_05518at 1029.654 kb on - strand, within BACOVA_05518at 1029.661 kb on + strand, within BACOVA_05518at 1029.693 kb on - strand, within BACOVA_05518at 1029.696 kb on + strand, within BACOVA_05518at 1029.699 kb on - strand, within BACOVA_05518at 1029.714 kb on - strand, within BACOVA_05518at 1029.714 kb on - strand, within BACOVA_05518at 1029.719 kb on - strand, within BACOVA_05518at 1029.740 kb on - strand, within BACOVA_05518at 1029.740 kb on - strand, within BACOVA_05518at 1029.742 kb on - strand, within BACOVA_05518at 1029.753 kb on - strand, within BACOVA_05518at 1029.753 kb on - strand, within BACOVA_05518at 1029.763 kb on + strand, within BACOVA_05518at 1029.820 kb on - strand, within BACOVA_05518at 1029.820 kb on - strand, within BACOVA_05518at 1029.840 kb on - strand, within BACOVA_05518at 1029.841 kb on + strand, within BACOVA_05518at 1029.874 kb on - strand, within BACOVA_05518

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
remove
1,026,828 - BACOVA_05516 0.26 -0.6
1,026,859 + BACOVA_05516 0.29 +0.0
1,026,869 + BACOVA_05516 0.30 +0.6
1,026,870 - BACOVA_05516 0.30 +0.3
1,026,894 - BACOVA_05516 0.32 -0.1
1,026,894 - BACOVA_05516 0.32 +0.3
1,026,903 - BACOVA_05516 0.33 +0.2
1,026,914 - BACOVA_05516 0.34 +0.0
1,026,939 + BACOVA_05516 0.36 +0.3
1,026,940 - BACOVA_05516 0.36 -1.0
1,026,940 - BACOVA_05516 0.36 +1.8
1,026,941 + BACOVA_05516 0.36 +0.4
1,026,942 - BACOVA_05516 0.36 -0.3
1,026,952 - BACOVA_05516 0.37 -1.0
1,026,952 - BACOVA_05516 0.37 +0.1
1,026,966 - BACOVA_05516 0.38 -1.3
1,026,984 - BACOVA_05516 0.40 -0.3
1,027,001 + BACOVA_05516 0.41 -1.1
1,027,013 + BACOVA_05516 0.42 +0.8
1,027,013 + BACOVA_05516 0.42 +0.5
1,027,021 + BACOVA_05516 0.43 +0.3
1,027,022 - BACOVA_05516 0.43 +0.7
1,027,076 - BACOVA_05516 0.48 -1.2
1,027,106 + BACOVA_05516 0.51 -1.2
1,027,123 + BACOVA_05516 0.52 +2.3
1,027,127 + BACOVA_05516 0.53 -2.3
1,027,184 - BACOVA_05516 0.58 +0.0
1,027,210 - BACOVA_05516 0.60 +0.1
1,027,213 + BACOVA_05516 0.60 -3.2
1,027,265 + BACOVA_05516 0.65 +1.0
1,027,265 + BACOVA_05516 0.65 +0.0
1,027,266 - BACOVA_05516 0.65 -0.2
1,027,266 - BACOVA_05516 0.65 -0.6
1,027,295 - BACOVA_05516 0.67 +0.2
1,027,323 - BACOVA_05516 0.70 -0.7
1,027,339 + BACOVA_05516 0.71 +0.4
1,027,347 + BACOVA_05516 0.72 +0.0
1,027,348 - BACOVA_05516 0.72 +0.9
1,027,348 - BACOVA_05516 0.72 -1.3
1,027,372 + BACOVA_05516 0.74 -0.2
1,027,372 + BACOVA_05516 0.74 -2.2
1,027,372 + BACOVA_05516 0.74 +0.0
1,027,386 - BACOVA_05516 0.76 +0.3
1,027,406 + BACOVA_05516 0.77 -1.0
1,027,407 - BACOVA_05516 0.77 -1.6
1,027,438 + BACOVA_05516 0.80 +2.0
1,027,441 - BACOVA_05516 0.80 +0.0
1,027,508 - BACOVA_05516 0.86 +1.3
1,027,511 - BACOVA_05516 0.87 +0.5
1,027,517 - BACOVA_05516 0.87 -0.9
1,027,517 - BACOVA_05516 0.87 +0.0
1,027,540 - BACOVA_05516 0.89 -1.6
1,027,547 + BACOVA_05516 0.90 +1.2
1,027,548 - BACOVA_05516 0.90 +0.4
1,027,568 - -1.4
1,027,568 - -0.6
1,027,573 - +0.3
1,027,573 - -0.5
1,027,574 + -1.4
1,027,575 - +0.3
1,027,575 - -0.6
1,027,585 - -1.5
1,027,586 + -1.3
1,027,608 - -0.3
1,027,623 + -0.8
1,027,656 - -0.6
1,027,767 - -0.1
1,027,878 - +0.1
1,027,917 + BACOVA_05517 0.13 +1.4
1,027,920 - BACOVA_05517 0.13 -0.6
1,028,006 - BACOVA_05517 0.21 -2.5
1,028,048 - BACOVA_05517 0.25 -0.9
1,028,050 - BACOVA_05517 0.25 -0.8
1,028,050 - BACOVA_05517 0.25 +0.2
1,028,051 + BACOVA_05517 0.25 -0.2
1,028,052 - BACOVA_05517 0.25 +1.0
1,028,381 - BACOVA_05517 0.54 +1.4
1,028,433 - BACOVA_05517 0.58 -0.1
1,028,444 + BACOVA_05517 0.59 -0.5
1,028,523 - BACOVA_05517 0.66 +2.2
1,028,523 - BACOVA_05517 0.66 +0.0
1,028,523 - BACOVA_05517 0.66 +0.4
1,028,554 - BACOVA_05517 0.69 -0.5
1,028,558 - BACOVA_05517 0.69 -1.3
1,028,558 - BACOVA_05517 0.69 -0.2
1,028,606 + BACOVA_05517 0.73 -0.3
1,028,714 - BACOVA_05517 0.83 -0.7
1,028,735 + BACOVA_05517 0.85 -0.8
1,028,808 - +1.6
1,028,808 - -0.3
1,028,808 - -1.8
1,028,811 + +1.2
1,028,811 + -1.8
1,028,834 + -0.2
1,028,835 - +0.1
1,028,882 - +1.2
1,028,904 - -0.9
1,028,908 - +0.3
1,028,916 - -2.0
1,028,916 - +0.6
1,028,939 - -0.3
1,028,975 - +0.7
1,028,975 - -0.9
1,029,006 - +0.6
1,029,014 - -1.8
1,029,045 + -1.3
1,029,046 - -0.2
1,029,051 - +1.2
1,029,051 - -1.0
1,029,060 - +2.8
1,029,060 - +1.5
1,029,064 - BACOVA_05518 0.10 -1.8
1,029,066 + BACOVA_05518 0.10 -0.8
1,029,067 - BACOVA_05518 0.10 -1.6
1,029,080 + BACOVA_05518 0.12 -0.4
1,029,081 - BACOVA_05518 0.12 +0.5
1,029,081 - BACOVA_05518 0.12 -0.3
1,029,087 + BACOVA_05518 0.12 +1.0
1,029,129 - BACOVA_05518 0.16 -0.8
1,029,129 - BACOVA_05518 0.16 -0.5
1,029,132 + BACOVA_05518 0.16 -2.6
1,029,133 - BACOVA_05518 0.16 -1.0
1,029,136 - BACOVA_05518 0.16 +0.2
1,029,136 - BACOVA_05518 0.16 +1.3
1,029,136 - BACOVA_05518 0.16 -1.2
1,029,139 - BACOVA_05518 0.17 -0.4
1,029,139 - BACOVA_05518 0.17 +0.3
1,029,139 - BACOVA_05518 0.17 -0.2
1,029,182 - BACOVA_05518 0.20 -1.2
1,029,201 - BACOVA_05518 0.22 -0.4
1,029,201 - BACOVA_05518 0.22 -0.3
1,029,204 + BACOVA_05518 0.22 -0.1
1,029,204 + BACOVA_05518 0.22 +0.8
1,029,206 + BACOVA_05518 0.22 -1.1
1,029,207 - BACOVA_05518 0.22 +0.2
1,029,213 - BACOVA_05518 0.23 -0.9
1,029,213 - BACOVA_05518 0.23 -0.6
1,029,248 + BACOVA_05518 0.26 +0.4
1,029,249 - BACOVA_05518 0.26 +1.0
1,029,249 - BACOVA_05518 0.26 +0.9
1,029,249 - BACOVA_05518 0.26 -1.0
1,029,256 - BACOVA_05518 0.26 +0.6
1,029,256 - BACOVA_05518 0.26 +1.3
1,029,261 - BACOVA_05518 0.27 -0.3
1,029,280 - BACOVA_05518 0.28 -0.3
1,029,282 + BACOVA_05518 0.29 -1.1
1,029,288 - BACOVA_05518 0.29 -1.0
1,029,288 - BACOVA_05518 0.29 -1.6
1,029,396 - BACOVA_05518 0.38 +0.5
1,029,396 - BACOVA_05518 0.38 -0.8
1,029,396 - BACOVA_05518 0.38 +0.4
1,029,440 + BACOVA_05518 0.42 -1.6
1,029,468 + BACOVA_05518 0.44 -1.8
1,029,496 - BACOVA_05518 0.47 -0.3
1,029,575 - BACOVA_05518 0.54 -0.2
1,029,585 - BACOVA_05518 0.54 +0.9
1,029,631 - BACOVA_05518 0.58 -0.2
1,029,654 - BACOVA_05518 0.60 +0.9
1,029,661 + BACOVA_05518 0.61 -1.3
1,029,693 - BACOVA_05518 0.64 -0.4
1,029,696 + BACOVA_05518 0.64 -0.6
1,029,699 - BACOVA_05518 0.64 -1.8
1,029,714 - BACOVA_05518 0.65 -0.6
1,029,714 - BACOVA_05518 0.65 -1.2
1,029,719 - BACOVA_05518 0.66 -2.1
1,029,740 - BACOVA_05518 0.68 +1.0
1,029,740 - BACOVA_05518 0.68 -0.4
1,029,742 - BACOVA_05518 0.68 -1.1
1,029,753 - BACOVA_05518 0.69 -2.7
1,029,753 - BACOVA_05518 0.69 -0.3
1,029,763 + BACOVA_05518 0.69 +0.8
1,029,820 - BACOVA_05518 0.74 +0.8
1,029,820 - BACOVA_05518 0.74 +0.8
1,029,840 - BACOVA_05518 0.76 -0.3
1,029,841 + BACOVA_05518 0.76 +0.3
1,029,874 - BACOVA_05518 0.79 -1.2

Or see this region's nucleotide sequence