Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05201

Experiment: D-Galactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05200 and BACOVA_05201 are separated by 119 nucleotidesBACOVA_05201 and BACOVA_05202 are separated by 99 nucleotidesBACOVA_05202 and BACOVA_05203 overlap by 8 nucleotides BACOVA_05200: BACOVA_05200 - CBS domain protein, at 699,459 to 700,715 _05200 BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976 _05201 BACOVA_05202: BACOVA_05202 - hypothetical protein, at 703,076 to 703,195 _05202 BACOVA_05203: BACOVA_05203 - tetratricopeptide repeat protein, at 703,188 to 706,541 _05203 Position (kb) 700 701 702 703Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 699.864 kb on + strand, within BACOVA_05200at 699.865 kb on - strand, within BACOVA_05200at 699.874 kb on + strand, within BACOVA_05200at 699.877 kb on - strand, within BACOVA_05200at 699.881 kb on + strand, within BACOVA_05200at 699.941 kb on + strand, within BACOVA_05200at 700.197 kb on + strand, within BACOVA_05200at 700.198 kb on - strand, within BACOVA_05200at 700.227 kb on + strand, within BACOVA_05200at 700.230 kb on - strand, within BACOVA_05200at 700.320 kb on - strand, within BACOVA_05200at 700.337 kb on + strand, within BACOVA_05200at 700.338 kb on - strand, within BACOVA_05200at 700.386 kb on - strand, within BACOVA_05200at 700.399 kb on + strand, within BACOVA_05200at 700.426 kb on + strand, within BACOVA_05200at 700.436 kb on + strand, within BACOVA_05200at 700.458 kb on - strand, within BACOVA_05200at 700.465 kb on - strand, within BACOVA_05200at 700.465 kb on - strand, within BACOVA_05200at 700.469 kb on + strand, within BACOVA_05200at 700.495 kb on - strand, within BACOVA_05200at 700.569 kb on + strand, within BACOVA_05200at 700.660 kb on + strandat 700.700 kb on - strandat 700.722 kb on + strandat 700.723 kb on - strandat 700.756 kb on + strandat 700.811 kb on + strandat 701.477 kb on + strand, within BACOVA_05201at 701.844 kb on - strand, within BACOVA_05201at 702.507 kb on + strand, within BACOVA_05201at 702.829 kb on - strandat 702.933 kb on - strandat 702.982 kb on + strandat 702.983 kb on - strandat 702.983 kb on - strandat 702.992 kb on + strandat 702.993 kb on - strandat 702.996 kb on + strandat 702.996 kb on + strandat 703.000 kb on - strandat 703.010 kb on + strandat 703.011 kb on - strandat 703.029 kb on + strandat 703.059 kb on + strandat 703.139 kb on + strand, within BACOVA_05202at 703.140 kb on - strand, within BACOVA_05202at 703.167 kb on + strand, within BACOVA_05202at 703.182 kb on + strand, within BACOVA_05202at 703.183 kb on - strand, within BACOVA_05202at 703.183 kb on - strand, within BACOVA_05202at 703.185 kb on - strandat 703.187 kb on - strandat 703.194 kb on - strandat 703.295 kb on - strandat 703.295 kb on - strandat 703.434 kb on - strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.458 kb on - strandat 703.458 kb on - strandat 703.492 kb on - strandat 703.502 kb on - strandat 703.502 kb on - strandat 703.502 kb on - strandat 703.530 kb on + strand, within BACOVA_05203at 703.541 kb on - strand, within BACOVA_05203at 703.598 kb on - strand, within BACOVA_05203at 703.618 kb on + strand, within BACOVA_05203at 703.627 kb on - strand, within BACOVA_05203at 703.632 kb on + strand, within BACOVA_05203at 703.636 kb on + strand, within BACOVA_05203at 703.743 kb on + strand, within BACOVA_05203at 703.767 kb on - strand, within BACOVA_05203at 703.819 kb on + strand, within BACOVA_05203at 703.835 kb on + strand, within BACOVA_05203at 703.895 kb on - strand, within BACOVA_05203

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
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699,864 + BACOVA_05200 0.32 +3.1
699,865 - BACOVA_05200 0.32 +1.4
699,874 + BACOVA_05200 0.33 +2.4
699,877 - BACOVA_05200 0.33 +2.5
699,881 + BACOVA_05200 0.34 +3.3
699,941 + BACOVA_05200 0.38 +3.1
700,197 + BACOVA_05200 0.59 +3.3
700,198 - BACOVA_05200 0.59 +2.3
700,227 + BACOVA_05200 0.61 +1.1
700,230 - BACOVA_05200 0.61 +4.0
700,320 - BACOVA_05200 0.68 +3.3
700,337 + BACOVA_05200 0.70 +3.6
700,338 - BACOVA_05200 0.70 +3.0
700,386 - BACOVA_05200 0.74 +0.5
700,399 + BACOVA_05200 0.75 +2.9
700,426 + BACOVA_05200 0.77 +0.9
700,436 + BACOVA_05200 0.78 +0.5
700,458 - BACOVA_05200 0.79 +0.9
700,465 - BACOVA_05200 0.80 +2.0
700,465 - BACOVA_05200 0.80 +2.6
700,469 + BACOVA_05200 0.80 +1.9
700,495 - BACOVA_05200 0.82 +2.8
700,569 + BACOVA_05200 0.88 +4.9
700,660 + +2.1
700,700 - +0.4
700,722 + -0.5
700,723 - +0.1
700,756 + +0.1
700,811 + +0.1
701,477 + BACOVA_05201 0.30 +1.1
701,844 - BACOVA_05201 0.47 -0.9
702,507 + BACOVA_05201 0.78 +0.1
702,829 - +1.1
702,933 - -1.9
702,982 + -1.5
702,983 - -0.3
702,983 - -1.7
702,992 + +0.3
702,993 - -1.2
702,996 + -2.5
702,996 + +1.3
703,000 - -0.7
703,010 + -0.2
703,011 - -0.5
703,029 + -0.0
703,059 + +0.5
703,139 + BACOVA_05202 0.53 -0.0
703,140 - BACOVA_05202 0.53 +0.6
703,167 + BACOVA_05202 0.76 +2.8
703,182 + BACOVA_05202 0.88 -0.5
703,183 - BACOVA_05202 0.89 +0.1
703,183 - BACOVA_05202 0.89 -2.1
703,185 - +3.0
703,187 - +2.3
703,194 - +0.2
703,295 - +1.1
703,295 - -1.6
703,434 - +0.9
703,457 + -0.5
703,457 + +0.7
703,457 + +1.7
703,457 + -1.5
703,457 + +0.5
703,458 - -0.9
703,458 - +0.9
703,492 - +0.6
703,502 - +1.2
703,502 - +1.1
703,502 - -2.3
703,530 + BACOVA_05203 0.10 -1.5
703,541 - BACOVA_05203 0.11 -1.9
703,598 - BACOVA_05203 0.12 +0.8
703,618 + BACOVA_05203 0.13 -0.4
703,627 - BACOVA_05203 0.13 -0.5
703,632 + BACOVA_05203 0.13 -0.1
703,636 + BACOVA_05203 0.13 -1.0
703,743 + BACOVA_05203 0.17 -0.9
703,767 - BACOVA_05203 0.17 -0.3
703,819 + BACOVA_05203 0.19 -0.8
703,835 + BACOVA_05203 0.19 +0.2
703,895 - BACOVA_05203 0.21 +1.4

Or see this region's nucleotide sequence