Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04278 and BACOVA_04279 are separated by 88 nucleotides BACOVA_04279 and BACOVA_04280 are separated by 99 nucleotides BACOVA_04280 and BACOVA_04281 are separated by 376 nucleotides
BACOVA_04278: BACOVA_04278 - transcriptional regulator, AraC family, at 165,521 to 166,360
_04278
BACOVA_04279: BACOVA_04279 - hypothetical protein, at 166,449 to 167,030
_04279
BACOVA_04280: BACOVA_04280 - pyridine nucleotide-disulfide oxidoreductase, at 167,130 to 168,503
_04280
BACOVA_04281: BACOVA_04281 - ABC transporter, ATP-binding protein, at 168,880 to 170,514
_04281
Position (kb) 167
168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 166.226 kb on + strand, within BACOVA_04278 at 166.259 kb on - strand, within BACOVA_04278 at 166.327 kb on - strand at 166.376 kb on + strand at 166.383 kb on - strand at 166.420 kb on + strand at 166.421 kb on - strand at 166.421 kb on - strand at 166.421 kb on - strand at 166.426 kb on - strand at 166.435 kb on - strand at 166.471 kb on + strand at 166.472 kb on - strand at 166.472 kb on - strand at 166.512 kb on - strand, within BACOVA_04279 at 166.534 kb on + strand, within BACOVA_04279 at 166.537 kb on + strand, within BACOVA_04279 at 166.544 kb on - strand, within BACOVA_04279 at 166.563 kb on + strand, within BACOVA_04279 at 166.572 kb on + strand, within BACOVA_04279 at 166.629 kb on + strand, within BACOVA_04279 at 166.630 kb on - strand, within BACOVA_04279 at 166.722 kb on + strand, within BACOVA_04279 at 166.723 kb on - strand, within BACOVA_04279 at 166.723 kb on - strand, within BACOVA_04279 at 166.723 kb on - strand, within BACOVA_04279 at 166.724 kb on + strand, within BACOVA_04279 at 166.734 kb on + strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.752 kb on - strand, within BACOVA_04279 at 166.775 kb on - strand, within BACOVA_04279 at 166.829 kb on + strand, within BACOVA_04279 at 166.918 kb on + strand, within BACOVA_04279 at 166.919 kb on - strand, within BACOVA_04279 at 166.982 kb on - strand at 167.019 kb on - strand at 167.028 kb on + strand at 167.041 kb on - strand at 167.096 kb on + strand at 167.097 kb on - strand at 167.098 kb on + strand at 167.098 kb on + strand at 167.098 kb on + strand at 167.106 kb on + strand at 167.129 kb on + strand at 167.139 kb on + strand at 167.150 kb on + strand at 167.156 kb on - strand at 167.156 kb on - strand at 167.244 kb on + strand at 167.244 kb on + strand at 167.244 kb on + strand at 167.245 kb on - strand at 167.245 kb on - strand at 167.245 kb on - strand at 167.266 kb on + strand at 167.274 kb on - strand, within BACOVA_04280 at 167.351 kb on + strand, within BACOVA_04280 at 167.355 kb on + strand, within BACOVA_04280 at 167.356 kb on - strand, within BACOVA_04280 at 167.356 kb on - strand, within BACOVA_04280 at 167.356 kb on - strand, within BACOVA_04280 at 167.426 kb on + strand, within BACOVA_04280 at 167.427 kb on - strand, within BACOVA_04280 at 167.444 kb on + strand, within BACOVA_04280 at 167.448 kb on + strand, within BACOVA_04280 at 167.449 kb on - strand, within BACOVA_04280 at 167.468 kb on + strand, within BACOVA_04280 at 167.481 kb on - strand, within BACOVA_04280 at 167.484 kb on - strand, within BACOVA_04280 at 167.484 kb on - strand, within BACOVA_04280 at 167.491 kb on + strand, within BACOVA_04280 at 167.491 kb on + strand, within BACOVA_04280 at 167.492 kb on - strand, within BACOVA_04280 at 167.497 kb on + strand, within BACOVA_04280 at 167.508 kb on + strand, within BACOVA_04280 at 167.510 kb on + strand, within BACOVA_04280 at 167.511 kb on - strand, within BACOVA_04280 at 167.537 kb on + strand, within BACOVA_04280 at 167.537 kb on + strand, within BACOVA_04280 at 167.553 kb on - strand, within BACOVA_04280 at 167.559 kb on - strand, within BACOVA_04280 at 167.599 kb on + strand, within BACOVA_04280 at 167.599 kb on + strand, within BACOVA_04280 at 167.599 kb on + strand, within BACOVA_04280 at 167.600 kb on - strand, within BACOVA_04280 at 167.600 kb on - strand, within BACOVA_04280 at 167.600 kb on - strand, within BACOVA_04280 at 167.601 kb on + strand, within BACOVA_04280 at 167.601 kb on + strand, within BACOVA_04280 at 167.602 kb on - strand, within BACOVA_04280 at 167.603 kb on + strand, within BACOVA_04280 at 167.603 kb on + strand, within BACOVA_04280 at 167.627 kb on - strand, within BACOVA_04280 at 167.627 kb on - strand, within BACOVA_04280 at 167.627 kb on - strand, within BACOVA_04280 at 167.632 kb on + strand, within BACOVA_04280 at 167.632 kb on + strand, within BACOVA_04280 at 167.668 kb on - strand, within BACOVA_04280 at 167.669 kb on + strand, within BACOVA_04280 at 167.669 kb on + strand, within BACOVA_04280 at 167.670 kb on - strand, within BACOVA_04280 at 167.690 kb on + strand, within BACOVA_04280 at 167.690 kb on + strand, within BACOVA_04280 at 167.690 kb on + strand, within BACOVA_04280 at 167.691 kb on - strand, within BACOVA_04280 at 167.695 kb on - strand, within BACOVA_04280 at 167.712 kb on - strand, within BACOVA_04280 at 167.745 kb on - strand, within BACOVA_04280 at 167.745 kb on - strand, within BACOVA_04280 at 167.837 kb on + strand, within BACOVA_04280 at 167.838 kb on - strand, within BACOVA_04280 at 167.871 kb on + strand, within BACOVA_04280 at 167.872 kb on - strand, within BACOVA_04280 at 167.898 kb on + strand, within BACOVA_04280 at 167.898 kb on + strand, within BACOVA_04280 at 167.899 kb on - strand, within BACOVA_04280 at 167.901 kb on + strand, within BACOVA_04280 at 167.901 kb on + strand, within BACOVA_04280 at 167.905 kb on + strand, within BACOVA_04280 at 167.905 kb on + strand, within BACOVA_04280 at 167.905 kb on + strand, within BACOVA_04280 at 168.030 kb on - strand, within BACOVA_04280 at 168.042 kb on - strand, within BACOVA_04280 at 168.044 kb on - strand, within BACOVA_04280 at 168.080 kb on + strand, within BACOVA_04280 at 168.172 kb on - strand, within BACOVA_04280 at 168.182 kb on + strand, within BACOVA_04280 at 168.182 kb on + strand, within BACOVA_04280 at 168.182 kb on + strand, within BACOVA_04280 at 168.240 kb on + strand, within BACOVA_04280 at 168.291 kb on - strand, within BACOVA_04280 at 168.312 kb on - strand, within BACOVA_04280 at 168.312 kb on - strand, within BACOVA_04280 at 168.312 kb on - strand, within BACOVA_04280 at 168.317 kb on - strand, within BACOVA_04280 at 168.317 kb on - strand, within BACOVA_04280 at 168.317 kb on - strand, within BACOVA_04280 at 168.332 kb on + strand, within BACOVA_04280 at 168.396 kb on - strand at 168.400 kb on + strand at 168.404 kb on + strand at 168.405 kb on - strand at 168.500 kb on - strand at 168.501 kb on + strand at 168.518 kb on - strand at 168.641 kb on + strand at 168.656 kb on + strand at 168.686 kb on + strand at 168.692 kb on - strand at 168.695 kb on + strand at 168.696 kb on - strand at 168.696 kb on - strand at 168.696 kb on - strand at 168.699 kb on + strand at 168.714 kb on + strand at 168.715 kb on - strand at 168.722 kb on - strand at 168.722 kb on - strand at 168.740 kb on - strand at 168.755 kb on + strand at 168.776 kb on + strand at 168.808 kb on + strand at 168.872 kb on - strand at 168.885 kb on + strand at 168.907 kb on + strand at 168.908 kb on - strand at 168.908 kb on - strand at 168.908 kb on - strand at 168.908 kb on - strand at 168.909 kb on + strand at 168.929 kb on + strand at 168.960 kb on + strand at 168.961 kb on - strand at 168.974 kb on + strand at 168.980 kb on + strand at 169.009 kb on - strand at 169.038 kb on - strand at 169.078 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.082 kb on - strand, within BACOVA_04281 at 169.082 kb on - strand, within BACOVA_04281 at 169.082 kb on - strand, within BACOVA_04281 at 169.082 kb on - strand, within BACOVA_04281 at 169.084 kb on - strand, within BACOVA_04281 at 169.140 kb on - strand, within BACOVA_04281 at 169.265 kb on + strand, within BACOVA_04281 at 169.275 kb on + strand, within BACOVA_04281 at 169.338 kb on + strand, within BACOVA_04281 at 169.338 kb on + strand, within BACOVA_04281 at 169.364 kb on + strand, within BACOVA_04281 at 169.364 kb on + strand, within BACOVA_04281 at 169.365 kb on + strand, within BACOVA_04281 at 169.415 kb on + strand, within BACOVA_04281 at 169.418 kb on - strand, within BACOVA_04281 at 169.418 kb on - strand, within BACOVA_04281
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 166,226 + BACOVA_04278 0.84 -1.6 166,259 - BACOVA_04278 0.88 +0.5 166,327 - +0.4 166,376 + +1.2 166,383 - +0.6 166,420 + +0.0 166,421 - +1.3 166,421 - +0.6 166,421 - +0.1 166,426 - +1.2 166,435 - -0.4 166,471 + -1.4 166,472 - -0.2 166,472 - +0.2 166,512 - BACOVA_04279 0.11 -1.4 166,534 + BACOVA_04279 0.15 +0.3 166,537 + BACOVA_04279 0.15 +1.4 166,544 - BACOVA_04279 0.16 -0.1 166,563 + BACOVA_04279 0.20 -1.0 166,572 + BACOVA_04279 0.21 +0.3 166,629 + BACOVA_04279 0.31 +1.7 166,630 - BACOVA_04279 0.31 -0.2 166,722 + BACOVA_04279 0.47 +1.4 166,723 - BACOVA_04279 0.47 -0.9 166,723 - BACOVA_04279 0.47 -1.2 166,723 - BACOVA_04279 0.47 -0.6 166,724 + BACOVA_04279 0.47 -0.5 166,734 + BACOVA_04279 0.49 +1.3 166,752 - BACOVA_04279 0.52 +1.5 166,752 - BACOVA_04279 0.52 -1.0 166,752 - BACOVA_04279 0.52 +0.0 166,752 - BACOVA_04279 0.52 -0.1 166,752 - BACOVA_04279 0.52 -0.1 166,775 - BACOVA_04279 0.56 -0.8 166,829 + BACOVA_04279 0.65 +0.6 166,918 + BACOVA_04279 0.81 +0.6 166,919 - BACOVA_04279 0.81 -2.2 166,982 - +0.4 167,019 - -0.5 167,028 + +0.4 167,041 - +0.3 167,096 + +0.3 167,097 - +0.4 167,098 + -0.7 167,098 + -1.3 167,098 + -0.1 167,106 + -0.9 167,129 + +0.1 167,139 + +0.2 167,150 + +1.6 167,156 - +0.0 167,156 - +0.7 167,244 + +0.3 167,244 + +0.3 167,244 + -1.1 167,245 - -0.7 167,245 - -1.3 167,245 - +0.4 167,266 + +0.0 167,274 - BACOVA_04280 0.10 +0.8 167,351 + BACOVA_04280 0.16 +0.2 167,355 + BACOVA_04280 0.16 -0.6 167,356 - BACOVA_04280 0.16 -0.5 167,356 - BACOVA_04280 0.16 -0.6 167,356 - BACOVA_04280 0.16 -1.0 167,426 + BACOVA_04280 0.22 +0.6 167,427 - BACOVA_04280 0.22 +0.6 167,444 + BACOVA_04280 0.23 -0.2 167,448 + BACOVA_04280 0.23 -1.3 167,449 - BACOVA_04280 0.23 -0.8 167,468 + BACOVA_04280 0.25 +0.0 167,481 - BACOVA_04280 0.26 -0.8 167,484 - BACOVA_04280 0.26 -0.3 167,484 - BACOVA_04280 0.26 -0.4 167,491 + BACOVA_04280 0.26 -0.1 167,491 + BACOVA_04280 0.26 +0.6 167,492 - BACOVA_04280 0.26 +1.9 167,497 + BACOVA_04280 0.27 +3.8 167,508 + BACOVA_04280 0.28 -0.4 167,510 + BACOVA_04280 0.28 +1.3 167,511 - BACOVA_04280 0.28 -0.9 167,537 + BACOVA_04280 0.30 +0.2 167,537 + BACOVA_04280 0.30 +0.7 167,553 - BACOVA_04280 0.31 +1.8 167,559 - BACOVA_04280 0.31 -1.2 167,599 + BACOVA_04280 0.34 -0.6 167,599 + BACOVA_04280 0.34 -1.0 167,599 + BACOVA_04280 0.34 -0.8 167,600 - BACOVA_04280 0.34 -0.4 167,600 - BACOVA_04280 0.34 -1.6 167,600 - BACOVA_04280 0.34 -0.7 167,601 + BACOVA_04280 0.34 +1.6 167,601 + BACOVA_04280 0.34 +0.0 167,602 - BACOVA_04280 0.34 -0.8 167,603 + BACOVA_04280 0.34 +0.4 167,603 + BACOVA_04280 0.34 -0.6 167,627 - BACOVA_04280 0.36 -0.3 167,627 - BACOVA_04280 0.36 +1.3 167,627 - BACOVA_04280 0.36 -1.8 167,632 + BACOVA_04280 0.37 -0.2 167,632 + BACOVA_04280 0.37 -0.2 167,668 - BACOVA_04280 0.39 +0.7 167,669 + BACOVA_04280 0.39 -1.5 167,669 + BACOVA_04280 0.39 -0.6 167,670 - BACOVA_04280 0.39 +1.4 167,690 + BACOVA_04280 0.41 -1.2 167,690 + BACOVA_04280 0.41 +3.0 167,690 + BACOVA_04280 0.41 +0.4 167,691 - BACOVA_04280 0.41 +0.3 167,695 - BACOVA_04280 0.41 -0.1 167,712 - BACOVA_04280 0.42 +0.3 167,745 - BACOVA_04280 0.45 -0.7 167,745 - BACOVA_04280 0.45 +0.1 167,837 + BACOVA_04280 0.51 +0.2 167,838 - BACOVA_04280 0.52 -0.6 167,871 + BACOVA_04280 0.54 -2.6 167,872 - BACOVA_04280 0.54 -1.3 167,898 + BACOVA_04280 0.56 -0.7 167,898 + BACOVA_04280 0.56 -0.8 167,899 - BACOVA_04280 0.56 -2.0 167,901 + BACOVA_04280 0.56 +0.3 167,901 + BACOVA_04280 0.56 +1.4 167,905 + BACOVA_04280 0.56 -0.2 167,905 + BACOVA_04280 0.56 -1.6 167,905 + BACOVA_04280 0.56 -0.3 168,030 - BACOVA_04280 0.66 +0.7 168,042 - BACOVA_04280 0.66 -0.2 168,044 - BACOVA_04280 0.67 -1.6 168,080 + BACOVA_04280 0.69 -0.2 168,172 - BACOVA_04280 0.76 -0.7 168,182 + BACOVA_04280 0.77 -0.9 168,182 + BACOVA_04280 0.77 -0.1 168,182 + BACOVA_04280 0.77 +0.0 168,240 + BACOVA_04280 0.81 -0.1 168,291 - BACOVA_04280 0.84 +1.0 168,312 - BACOVA_04280 0.86 -1.6 168,312 - BACOVA_04280 0.86 +3.3 168,312 - BACOVA_04280 0.86 +0.3 168,317 - BACOVA_04280 0.86 -0.2 168,317 - BACOVA_04280 0.86 +0.2 168,317 - BACOVA_04280 0.86 +1.0 168,332 + BACOVA_04280 0.87 +0.1 168,396 - -0.3 168,400 + -0.2 168,404 + -0.7 168,405 - +0.0 168,500 - +0.0 168,501 + +1.1 168,518 - -0.3 168,641 + -0.4 168,656 + -0.7 168,686 + +0.0 168,692 - +1.2 168,695 + -2.1 168,696 - -2.0 168,696 - +2.5 168,696 - +0.0 168,699 + -0.3 168,714 + +0.0 168,715 - +0.4 168,722 - -0.6 168,722 - -0.8 168,740 - -0.1 168,755 + +0.5 168,776 + +0.0 168,808 + -2.2 168,872 - -0.5 168,885 + -0.4 168,907 + +0.4 168,908 - +0.3 168,908 - -0.8 168,908 - -1.8 168,908 - -0.4 168,909 + -1.9 168,929 + +3.2 168,960 + -0.7 168,961 - -1.2 168,974 + -0.1 168,980 + +0.4 169,009 - -0.9 169,038 - +0.7 169,078 + BACOVA_04281 0.12 +0.4 169,081 + BACOVA_04281 0.12 -1.6 169,081 + BACOVA_04281 0.12 -0.3 169,081 + BACOVA_04281 0.12 -0.4 169,081 + BACOVA_04281 0.12 -3.3 169,081 + BACOVA_04281 0.12 -1.3 169,082 - BACOVA_04281 0.12 +0.0 169,082 - BACOVA_04281 0.12 -1.6 169,082 - BACOVA_04281 0.12 -0.6 169,082 - BACOVA_04281 0.12 -0.0 169,084 - BACOVA_04281 0.12 +0.8 169,140 - BACOVA_04281 0.16 +2.0 169,265 + BACOVA_04281 0.24 -2.0 169,275 + BACOVA_04281 0.24 -0.9 169,338 + BACOVA_04281 0.28 -0.4 169,338 + BACOVA_04281 0.28 +0.6 169,364 + BACOVA_04281 0.30 -1.0 169,364 + BACOVA_04281 0.30 -0.6 169,365 + BACOVA_04281 0.30 +0.3 169,415 + BACOVA_04281 0.33 +0.1 169,418 - BACOVA_04281 0.33 +0.2 169,418 - BACOVA_04281 0.33 -0.9
Or see this region's nucleotide sequence