Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04060

Experiment: D-Galactose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04057 and BACOVA_04059 are separated by 26 nucleotidesBACOVA_04059 and BACOVA_04060 overlap by 4 nucleotidesBACOVA_04060 and BACOVA_04061 are separated by 4 nucleotidesBACOVA_04061 and BACOVA_04062 are separated by 94 nucleotides BACOVA_04057: BACOVA_04057 - recombination protein RecR, at 391,349 to 392,074 _04057 BACOVA_04059: BACOVA_04059 - hypothetical protein, at 392,101 to 392,559 _04059 BACOVA_04060: BACOVA_04060 - acetyltransferase, GNAT family, at 392,556 to 393,092 _04060 BACOVA_04061: BACOVA_04061 - putative ACR, COG1678, at 393,097 to 393,687 _04061 BACOVA_04062: BACOVA_04062 - aminotransferase, class I/II, at 393,782 to 395,098 _04062 Position (kb) 392 393 394Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 391.603 kb on + strand, within BACOVA_04057at 391.609 kb on - strand, within BACOVA_04057at 391.651 kb on + strand, within BACOVA_04057at 391.775 kb on + strand, within BACOVA_04057at 391.919 kb on - strand, within BACOVA_04057at 391.928 kb on + strand, within BACOVA_04057at 391.931 kb on - strand, within BACOVA_04057at 391.949 kb on - strand, within BACOVA_04057at 391.975 kb on - strand, within BACOVA_04057at 392.008 kb on - strandat 392.009 kb on + strandat 392.080 kb on - strandat 392.226 kb on + strand, within BACOVA_04059at 392.242 kb on + strand, within BACOVA_04059at 392.344 kb on - strand, within BACOVA_04059at 392.402 kb on - strand, within BACOVA_04059at 392.406 kb on - strand, within BACOVA_04059at 392.409 kb on + strand, within BACOVA_04059at 392.410 kb on - strand, within BACOVA_04059at 392.434 kb on + strand, within BACOVA_04059at 392.434 kb on + strand, within BACOVA_04059at 392.622 kb on - strand, within BACOVA_04060at 392.624 kb on - strand, within BACOVA_04060at 392.691 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.709 kb on - strand, within BACOVA_04060at 392.749 kb on + strand, within BACOVA_04060at 392.750 kb on - strand, within BACOVA_04060at 392.784 kb on - strand, within BACOVA_04060at 392.792 kb on + strand, within BACOVA_04060at 392.792 kb on + strand, within BACOVA_04060at 392.801 kb on + strand, within BACOVA_04060at 392.804 kb on + strand, within BACOVA_04060at 392.805 kb on - strand, within BACOVA_04060at 392.944 kb on - strand, within BACOVA_04060at 392.944 kb on - strand, within BACOVA_04060at 392.963 kb on + strand, within BACOVA_04060at 393.084 kb on - strandat 393.108 kb on + strandat 393.151 kb on + strandat 393.151 kb on + strandat 393.152 kb on + strandat 393.178 kb on - strand, within BACOVA_04061at 393.203 kb on + strand, within BACOVA_04061at 393.204 kb on - strand, within BACOVA_04061at 393.253 kb on - strand, within BACOVA_04061at 393.256 kb on + strand, within BACOVA_04061at 393.326 kb on - strand, within BACOVA_04061at 393.326 kb on - strand, within BACOVA_04061at 393.330 kb on + strand, within BACOVA_04061at 393.333 kb on - strand, within BACOVA_04061at 393.366 kb on - strand, within BACOVA_04061at 393.399 kb on + strand, within BACOVA_04061at 393.400 kb on - strand, within BACOVA_04061at 393.406 kb on + strand, within BACOVA_04061at 393.407 kb on - strand, within BACOVA_04061at 393.425 kb on - strand, within BACOVA_04061at 393.442 kb on - strand, within BACOVA_04061at 393.476 kb on + strand, within BACOVA_04061at 393.502 kb on - strand, within BACOVA_04061at 393.601 kb on + strand, within BACOVA_04061at 393.602 kb on - strand, within BACOVA_04061at 393.663 kb on + strandat 393.663 kb on + strandat 393.681 kb on + strandat 393.694 kb on - strandat 393.694 kb on - strandat 393.694 kb on - strandat 393.716 kb on - strandat 393.716 kb on - strandat 393.747 kb on - strandat 393.759 kb on + strandat 393.759 kb on + strandat 393.760 kb on - strandat 393.770 kb on + strandat 393.771 kb on - strandat 393.771 kb on - strandat 393.771 kb on - strandat 393.810 kb on - strandat 393.838 kb on - strandat 393.863 kb on - strandat 393.895 kb on + strandat 393.903 kb on - strandat 393.903 kb on - strandat 393.927 kb on + strand, within BACOVA_04062at 394.023 kb on + strand, within BACOVA_04062at 394.023 kb on + strand, within BACOVA_04062at 394.024 kb on - strand, within BACOVA_04062at 394.083 kb on + strand, within BACOVA_04062at 394.083 kb on + strand, within BACOVA_04062at 394.086 kb on - strand, within BACOVA_04062

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
remove
391,603 + BACOVA_04057 0.35 -0.5
391,609 - BACOVA_04057 0.36 -0.7
391,651 + BACOVA_04057 0.42 +1.9
391,775 + BACOVA_04057 0.59 -2.3
391,919 - BACOVA_04057 0.79 -1.5
391,928 + BACOVA_04057 0.80 +0.3
391,931 - BACOVA_04057 0.80 -0.1
391,949 - BACOVA_04057 0.83 -1.1
391,975 - BACOVA_04057 0.86 -4.2
392,008 - -0.1
392,009 + +0.9
392,080 - -1.1
392,226 + BACOVA_04059 0.27 -0.1
392,242 + BACOVA_04059 0.31 +1.0
392,344 - BACOVA_04059 0.53 -1.1
392,402 - BACOVA_04059 0.66 -1.9
392,406 - BACOVA_04059 0.66 -0.1
392,409 + BACOVA_04059 0.67 +0.6
392,410 - BACOVA_04059 0.67 -1.7
392,434 + BACOVA_04059 0.73 -1.1
392,434 + BACOVA_04059 0.73 +0.1
392,622 - BACOVA_04060 0.12 -0.7
392,624 - BACOVA_04060 0.13 -2.3
392,691 + BACOVA_04060 0.25 -1.7
392,708 + BACOVA_04060 0.28 -1.5
392,708 + BACOVA_04060 0.28 -0.7
392,708 + BACOVA_04060 0.28 -2.3
392,709 - BACOVA_04060 0.28 -1.1
392,749 + BACOVA_04060 0.36 -1.1
392,750 - BACOVA_04060 0.36 -1.7
392,784 - BACOVA_04060 0.42 +0.9
392,792 + BACOVA_04060 0.44 -1.1
392,792 + BACOVA_04060 0.44 -1.1
392,801 + BACOVA_04060 0.46 -0.1
392,804 + BACOVA_04060 0.46 -1.5
392,805 - BACOVA_04060 0.46 +0.9
392,944 - BACOVA_04060 0.72 +0.9
392,944 - BACOVA_04060 0.72 -0.1
392,963 + BACOVA_04060 0.76 -2.5
393,084 - -2.8
393,108 + -1.0
393,151 + +0.3
393,151 + +0.3
393,152 + -0.9
393,178 - BACOVA_04061 0.14 -0.9
393,203 + BACOVA_04061 0.18 +0.1
393,204 - BACOVA_04061 0.18 -0.3
393,253 - BACOVA_04061 0.26 -0.1
393,256 + BACOVA_04061 0.27 -0.3
393,326 - BACOVA_04061 0.39 -0.9
393,326 - BACOVA_04061 0.39 -0.1
393,330 + BACOVA_04061 0.39 -0.8
393,333 - BACOVA_04061 0.40 -0.8
393,366 - BACOVA_04061 0.46 -1.5
393,399 + BACOVA_04061 0.51 +0.3
393,400 - BACOVA_04061 0.51 -0.4
393,406 + BACOVA_04061 0.52 +1.8
393,407 - BACOVA_04061 0.52 +0.2
393,425 - BACOVA_04061 0.55 +0.9
393,442 - BACOVA_04061 0.58 -0.5
393,476 + BACOVA_04061 0.64 -1.1
393,502 - BACOVA_04061 0.69 +0.4
393,601 + BACOVA_04061 0.85 -0.9
393,602 - BACOVA_04061 0.85 -1.7
393,663 + +0.1
393,663 + -0.4
393,681 + -0.5
393,694 - +0.9
393,694 - +1.4
393,694 - +0.7
393,716 - +0.0
393,716 - +0.6
393,747 - +0.1
393,759 + -0.0
393,759 + -0.1
393,760 - +0.0
393,770 + +1.3
393,771 - -1.3
393,771 - -0.6
393,771 - +0.9
393,810 - -0.2
393,838 - -0.0
393,863 - -1.9
393,895 + +0.4
393,903 - +0.9
393,903 - -0.6
393,927 + BACOVA_04062 0.11 -1.3
394,023 + BACOVA_04062 0.18 +0.6
394,023 + BACOVA_04062 0.18 -1.4
394,024 - BACOVA_04062 0.18 -0.7
394,083 + BACOVA_04062 0.23 -0.5
394,083 + BACOVA_04062 0.23 -0.8
394,086 - BACOVA_04062 0.23 +0.3

Or see this region's nucleotide sequence