Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02034

Experiment: D-Galactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02033 and BACOVA_02034 are separated by 13 nucleotidesBACOVA_02034 and BACOVA_02035 are separated by 7 nucleotidesBACOVA_02035 and BACOVA_02036 are separated by 31 nucleotides BACOVA_02033: BACOVA_02033 - hypothetical protein, at 335,497 to 337,026 _02033 BACOVA_02034: BACOVA_02034 - hypothetical protein, at 337,040 to 337,819 _02034 BACOVA_02035: BACOVA_02035 - endonuclease/exonuclease/phosphatase family protein, at 337,827 to 338,600 _02035 BACOVA_02036: BACOVA_02036 - sigma factor regulatory protein, FecR/PupR family, at 338,632 to 339,588 _02036 Position (kb) 337 338Strain fitness (log2 ratio) -2 -1 0 1 2 3at 336.078 kb on + strand, within BACOVA_02033at 336.078 kb on + strand, within BACOVA_02033at 336.079 kb on - strand, within BACOVA_02033at 336.079 kb on - strand, within BACOVA_02033at 336.098 kb on - strand, within BACOVA_02033at 336.143 kb on - strand, within BACOVA_02033at 336.145 kb on + strand, within BACOVA_02033at 336.145 kb on + strand, within BACOVA_02033at 336.146 kb on - strand, within BACOVA_02033at 336.146 kb on - strand, within BACOVA_02033at 336.166 kb on + strand, within BACOVA_02033at 336.167 kb on - strand, within BACOVA_02033at 336.181 kb on + strand, within BACOVA_02033at 336.192 kb on + strand, within BACOVA_02033at 336.192 kb on + strand, within BACOVA_02033at 336.192 kb on + strand, within BACOVA_02033at 336.294 kb on + strand, within BACOVA_02033at 336.327 kb on + strand, within BACOVA_02033at 336.327 kb on + strand, within BACOVA_02033at 336.327 kb on + strand, within BACOVA_02033at 336.327 kb on + strand, within BACOVA_02033at 336.328 kb on - strand, within BACOVA_02033at 336.328 kb on - strand, within BACOVA_02033at 336.328 kb on - strand, within BACOVA_02033at 336.328 kb on - strand, within BACOVA_02033at 336.328 kb on - strand, within BACOVA_02033at 336.363 kb on + strand, within BACOVA_02033at 336.429 kb on + strand, within BACOVA_02033at 336.429 kb on + strand, within BACOVA_02033at 336.429 kb on + strand, within BACOVA_02033at 336.430 kb on - strand, within BACOVA_02033at 336.430 kb on - strand, within BACOVA_02033at 336.431 kb on + strand, within BACOVA_02033at 336.451 kb on + strand, within BACOVA_02033at 336.456 kb on + strand, within BACOVA_02033at 336.468 kb on + strand, within BACOVA_02033at 336.468 kb on + strand, within BACOVA_02033at 336.468 kb on + strand, within BACOVA_02033at 336.478 kb on - strand, within BACOVA_02033at 336.483 kb on + strand, within BACOVA_02033at 336.484 kb on - strand, within BACOVA_02033at 336.484 kb on - strand, within BACOVA_02033at 336.484 kb on - strand, within BACOVA_02033at 336.508 kb on + strand, within BACOVA_02033at 336.539 kb on - strand, within BACOVA_02033at 336.600 kb on + strand, within BACOVA_02033at 336.601 kb on - strand, within BACOVA_02033at 336.604 kb on + strand, within BACOVA_02033at 336.604 kb on + strand, within BACOVA_02033at 336.605 kb on - strand, within BACOVA_02033at 336.605 kb on - strand, within BACOVA_02033at 336.709 kb on - strand, within BACOVA_02033at 336.723 kb on + strand, within BACOVA_02033at 336.724 kb on - strand, within BACOVA_02033at 336.727 kb on + strand, within BACOVA_02033at 336.727 kb on + strand, within BACOVA_02033at 336.727 kb on + strand, within BACOVA_02033at 336.799 kb on - strand, within BACOVA_02033at 336.799 kb on - strand, within BACOVA_02033at 336.800 kb on - strand, within BACOVA_02033at 336.803 kb on + strand, within BACOVA_02033at 336.803 kb on + strand, within BACOVA_02033at 336.803 kb on + strand, within BACOVA_02033at 336.804 kb on - strand, within BACOVA_02033at 336.804 kb on - strand, within BACOVA_02033at 336.804 kb on - strand, within BACOVA_02033at 336.804 kb on - strand, within BACOVA_02033at 336.806 kb on - strand, within BACOVA_02033at 336.806 kb on - strand, within BACOVA_02033at 336.806 kb on - strand, within BACOVA_02033at 336.806 kb on - strand, within BACOVA_02033at 336.807 kb on + strand, within BACOVA_02033at 336.807 kb on + strand, within BACOVA_02033at 336.807 kb on + strand, within BACOVA_02033at 336.807 kb on + strand, within BACOVA_02033at 336.808 kb on - strand, within BACOVA_02033at 336.815 kb on - strand, within BACOVA_02033at 336.815 kb on - strand, within BACOVA_02033at 336.844 kb on + strand, within BACOVA_02033at 336.844 kb on + strand, within BACOVA_02033at 336.844 kb on + strand, within BACOVA_02033at 336.864 kb on - strand, within BACOVA_02033at 336.877 kb on + strandat 336.877 kb on + strandat 336.902 kb on - strandat 336.906 kb on + strandat 336.917 kb on + strandat 336.992 kb on - strandat 337.015 kb on - strandat 337.015 kb on - strandat 337.015 kb on - strandat 337.076 kb on + strandat 337.077 kb on - strandat 337.124 kb on - strand, within BACOVA_02034at 337.144 kb on + strand, within BACOVA_02034at 337.144 kb on + strand, within BACOVA_02034at 337.145 kb on - strand, within BACOVA_02034at 337.216 kb on + strand, within BACOVA_02034at 337.217 kb on - strand, within BACOVA_02034at 337.234 kb on + strand, within BACOVA_02034at 337.242 kb on - strand, within BACOVA_02034at 337.316 kb on + strand, within BACOVA_02034at 337.317 kb on - strand, within BACOVA_02034at 337.334 kb on + strand, within BACOVA_02034at 337.358 kb on - strand, within BACOVA_02034at 337.358 kb on - strand, within BACOVA_02034at 337.362 kb on - strand, within BACOVA_02034at 337.419 kb on + strand, within BACOVA_02034at 337.420 kb on - strand, within BACOVA_02034at 337.439 kb on - strand, within BACOVA_02034at 337.489 kb on + strand, within BACOVA_02034at 337.490 kb on - strand, within BACOVA_02034at 337.531 kb on + strand, within BACOVA_02034at 337.553 kb on + strand, within BACOVA_02034at 337.554 kb on - strand, within BACOVA_02034at 337.643 kb on - strand, within BACOVA_02034at 337.649 kb on - strand, within BACOVA_02034at 337.658 kb on - strand, within BACOVA_02034at 337.691 kb on + strand, within BACOVA_02034at 337.700 kb on - strand, within BACOVA_02034at 337.744 kb on + strandat 337.756 kb on + strandat 337.787 kb on + strandat 337.789 kb on + strandat 337.789 kb on + strandat 337.790 kb on - strandat 337.803 kb on - strandat 337.820 kb on - strandat 337.916 kb on + strand, within BACOVA_02035at 337.916 kb on + strand, within BACOVA_02035at 337.935 kb on + strand, within BACOVA_02035at 337.937 kb on + strand, within BACOVA_02035at 337.937 kb on + strand, within BACOVA_02035at 337.982 kb on + strand, within BACOVA_02035at 337.982 kb on + strand, within BACOVA_02035at 337.983 kb on - strand, within BACOVA_02035at 338.030 kb on + strand, within BACOVA_02035at 338.031 kb on - strand, within BACOVA_02035at 338.031 kb on - strand, within BACOVA_02035at 338.031 kb on - strand, within BACOVA_02035at 338.076 kb on - strand, within BACOVA_02035at 338.099 kb on + strand, within BACOVA_02035at 338.124 kb on + strand, within BACOVA_02035at 338.199 kb on + strand, within BACOVA_02035at 338.199 kb on + strand, within BACOVA_02035at 338.199 kb on + strand, within BACOVA_02035at 338.203 kb on + strand, within BACOVA_02035at 338.204 kb on - strand, within BACOVA_02035at 338.204 kb on - strand, within BACOVA_02035at 338.204 kb on - strand, within BACOVA_02035at 338.205 kb on + strand, within BACOVA_02035at 338.209 kb on - strand, within BACOVA_02035at 338.255 kb on + strand, within BACOVA_02035at 338.262 kb on - strand, within BACOVA_02035at 338.262 kb on - strand, within BACOVA_02035at 338.264 kb on - strand, within BACOVA_02035at 338.292 kb on + strand, within BACOVA_02035at 338.293 kb on - strand, within BACOVA_02035at 338.315 kb on + strand, within BACOVA_02035at 338.409 kb on + strand, within BACOVA_02035at 338.425 kb on - strand, within BACOVA_02035at 338.440 kb on + strand, within BACOVA_02035at 338.454 kb on + strand, within BACOVA_02035at 338.455 kb on - strand, within BACOVA_02035at 338.455 kb on - strand, within BACOVA_02035at 338.455 kb on - strand, within BACOVA_02035at 338.461 kb on + strand, within BACOVA_02035at 338.507 kb on + strand, within BACOVA_02035at 338.507 kb on + strand, within BACOVA_02035at 338.509 kb on + strand, within BACOVA_02035at 338.510 kb on - strand, within BACOVA_02035at 338.537 kb on - strandat 338.540 kb on + strandat 338.541 kb on - strandat 338.574 kb on + strandat 338.575 kb on - strandat 338.600 kb on + strandat 338.623 kb on + strandat 338.623 kb on + strandat 338.624 kb on - strandat 338.643 kb on + strandat 338.644 kb on - strandat 338.645 kb on + strandat 338.645 kb on + strandat 338.645 kb on + strandat 338.645 kb on + strandat 338.645 kb on + strandat 338.645 kb on + strandat 338.649 kb on + strandat 338.649 kb on + strandat 338.652 kb on - strandat 338.708 kb on + strandat 338.708 kb on + strandat 338.708 kb on + strandat 338.709 kb on - strandat 338.741 kb on + strand, within BACOVA_02036at 338.742 kb on - strand, within BACOVA_02036at 338.775 kb on + strand, within BACOVA_02036at 338.783 kb on - strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.808 kb on + strand, within BACOVA_02036at 338.809 kb on - strand, within BACOVA_02036at 338.809 kb on - strand, within BACOVA_02036at 338.809 kb on - strand, within BACOVA_02036at 338.809 kb on - strand, within BACOVA_02036at 338.809 kb on - strand, within BACOVA_02036at 338.809 kb on - strand, within BACOVA_02036

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
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336,078 + BACOVA_02033 0.38 -0.2
336,078 + BACOVA_02033 0.38 +1.0
336,079 - BACOVA_02033 0.38 -1.5
336,079 - BACOVA_02033 0.38 +0.0
336,098 - BACOVA_02033 0.39 -1.2
336,143 - BACOVA_02033 0.42 -0.8
336,145 + BACOVA_02033 0.42 -0.5
336,145 + BACOVA_02033 0.42 -2.7
336,146 - BACOVA_02033 0.42 -0.1
336,146 - BACOVA_02033 0.42 +0.5
336,166 + BACOVA_02033 0.44 +0.5
336,167 - BACOVA_02033 0.44 -2.0
336,181 + BACOVA_02033 0.45 -1.0
336,192 + BACOVA_02033 0.45 -1.3
336,192 + BACOVA_02033 0.45 +0.6
336,192 + BACOVA_02033 0.45 +0.5
336,294 + BACOVA_02033 0.52 +0.4
336,327 + BACOVA_02033 0.54 -0.4
336,327 + BACOVA_02033 0.54 -2.0
336,327 + BACOVA_02033 0.54 +1.1
336,327 + BACOVA_02033 0.54 +0.4
336,328 - BACOVA_02033 0.54 -0.4
336,328 - BACOVA_02033 0.54 +0.1
336,328 - BACOVA_02033 0.54 +0.8
336,328 - BACOVA_02033 0.54 -0.0
336,328 - BACOVA_02033 0.54 -1.0
336,363 + BACOVA_02033 0.57 -0.8
336,429 + BACOVA_02033 0.61 -1.6
336,429 + BACOVA_02033 0.61 -0.1
336,429 + BACOVA_02033 0.61 +2.1
336,430 - BACOVA_02033 0.61 -0.6
336,430 - BACOVA_02033 0.61 +1.1
336,431 + BACOVA_02033 0.61 +1.0
336,451 + BACOVA_02033 0.62 -0.6
336,456 + BACOVA_02033 0.63 +0.2
336,468 + BACOVA_02033 0.63 -0.6
336,468 + BACOVA_02033 0.63 -0.3
336,468 + BACOVA_02033 0.63 -0.1
336,478 - BACOVA_02033 0.64 +0.3
336,483 + BACOVA_02033 0.64 -1.0
336,484 - BACOVA_02033 0.65 -0.4
336,484 - BACOVA_02033 0.65 +1.5
336,484 - BACOVA_02033 0.65 -0.6
336,508 + BACOVA_02033 0.66 -0.8
336,539 - BACOVA_02033 0.68 +0.1
336,600 + BACOVA_02033 0.72 +0.0
336,601 - BACOVA_02033 0.72 -0.5
336,604 + BACOVA_02033 0.72 -0.5
336,604 + BACOVA_02033 0.72 -0.2
336,605 - BACOVA_02033 0.72 +0.3
336,605 - BACOVA_02033 0.72 -0.2
336,709 - BACOVA_02033 0.79 -0.5
336,723 + BACOVA_02033 0.80 -0.3
336,724 - BACOVA_02033 0.80 -0.2
336,727 + BACOVA_02033 0.80 -0.0
336,727 + BACOVA_02033 0.80 -0.2
336,727 + BACOVA_02033 0.80 -0.1
336,799 - BACOVA_02033 0.85 -0.8
336,799 - BACOVA_02033 0.85 -0.3
336,800 - BACOVA_02033 0.85 -0.3
336,803 + BACOVA_02033 0.85 +0.7
336,803 + BACOVA_02033 0.85 -0.9
336,803 + BACOVA_02033 0.85 +1.4
336,804 - BACOVA_02033 0.85 +0.4
336,804 - BACOVA_02033 0.85 -1.0
336,804 - BACOVA_02033 0.85 -0.2
336,804 - BACOVA_02033 0.85 -0.4
336,806 - BACOVA_02033 0.86 +1.6
336,806 - BACOVA_02033 0.86 -0.7
336,806 - BACOVA_02033 0.86 -1.1
336,806 - BACOVA_02033 0.86 +0.1
336,807 + BACOVA_02033 0.86 -1.0
336,807 + BACOVA_02033 0.86 -0.2
336,807 + BACOVA_02033 0.86 +2.4
336,807 + BACOVA_02033 0.86 +0.0
336,808 - BACOVA_02033 0.86 +0.7
336,815 - BACOVA_02033 0.86 +1.3
336,815 - BACOVA_02033 0.86 -1.8
336,844 + BACOVA_02033 0.88 -0.6
336,844 + BACOVA_02033 0.88 +0.9
336,844 + BACOVA_02033 0.88 +0.0
336,864 - BACOVA_02033 0.89 -0.4
336,877 + +0.2
336,877 + +0.5
336,902 - -0.2
336,906 + +0.2
336,917 + +0.8
336,992 - -2.3
337,015 - -1.3
337,015 - -0.2
337,015 - -0.3
337,076 + -1.0
337,077 - -0.9
337,124 - BACOVA_02034 0.11 +1.1
337,144 + BACOVA_02034 0.13 +0.1
337,144 + BACOVA_02034 0.13 -1.0
337,145 - BACOVA_02034 0.13 -0.6
337,216 + BACOVA_02034 0.23 -0.3
337,217 - BACOVA_02034 0.23 +0.1
337,234 + BACOVA_02034 0.25 -2.1
337,242 - BACOVA_02034 0.26 +0.4
337,316 + BACOVA_02034 0.35 -0.2
337,317 - BACOVA_02034 0.36 -0.1
337,334 + BACOVA_02034 0.38 +1.3
337,358 - BACOVA_02034 0.41 -0.5
337,358 - BACOVA_02034 0.41 -0.4
337,362 - BACOVA_02034 0.41 +1.1
337,419 + BACOVA_02034 0.49 -0.2
337,420 - BACOVA_02034 0.49 +1.4
337,439 - BACOVA_02034 0.51 -0.7
337,489 + BACOVA_02034 0.58 -0.6
337,490 - BACOVA_02034 0.58 +0.9
337,531 + BACOVA_02034 0.63 +0.1
337,553 + BACOVA_02034 0.66 +3.1
337,554 - BACOVA_02034 0.66 -0.3
337,643 - BACOVA_02034 0.77 -1.3
337,649 - BACOVA_02034 0.78 +0.4
337,658 - BACOVA_02034 0.79 +0.1
337,691 + BACOVA_02034 0.83 -1.4
337,700 - BACOVA_02034 0.85 -0.6
337,744 + +1.6
337,756 + +0.1
337,787 + +1.1
337,789 + +0.2
337,789 + +0.7
337,790 - -0.8
337,803 - +1.2
337,820 - -0.2
337,916 + BACOVA_02035 0.11 -0.4
337,916 + BACOVA_02035 0.11 -1.1
337,935 + BACOVA_02035 0.14 +0.2
337,937 + BACOVA_02035 0.14 -1.8
337,937 + BACOVA_02035 0.14 +0.5
337,982 + BACOVA_02035 0.20 +0.3
337,982 + BACOVA_02035 0.20 -0.4
337,983 - BACOVA_02035 0.20 -0.2
338,030 + BACOVA_02035 0.26 -1.0
338,031 - BACOVA_02035 0.26 +0.5
338,031 - BACOVA_02035 0.26 +0.2
338,031 - BACOVA_02035 0.26 -1.1
338,076 - BACOVA_02035 0.32 -0.6
338,099 + BACOVA_02035 0.35 -1.6
338,124 + BACOVA_02035 0.38 +1.7
338,199 + BACOVA_02035 0.48 +0.8
338,199 + BACOVA_02035 0.48 -0.4
338,199 + BACOVA_02035 0.48 +0.4
338,203 + BACOVA_02035 0.49 +0.1
338,204 - BACOVA_02035 0.49 +0.2
338,204 - BACOVA_02035 0.49 -0.1
338,204 - BACOVA_02035 0.49 +0.5
338,205 + BACOVA_02035 0.49 +0.1
338,209 - BACOVA_02035 0.49 -1.4
338,255 + BACOVA_02035 0.55 -0.1
338,262 - BACOVA_02035 0.56 +0.6
338,262 - BACOVA_02035 0.56 -2.0
338,264 - BACOVA_02035 0.56 +0.6
338,292 + BACOVA_02035 0.60 -0.8
338,293 - BACOVA_02035 0.60 -0.4
338,315 + BACOVA_02035 0.63 +1.5
338,409 + BACOVA_02035 0.75 +0.1
338,425 - BACOVA_02035 0.77 -0.8
338,440 + BACOVA_02035 0.79 +0.1
338,454 + BACOVA_02035 0.81 -0.6
338,455 - BACOVA_02035 0.81 -0.1
338,455 - BACOVA_02035 0.81 +0.4
338,455 - BACOVA_02035 0.81 -0.1
338,461 + BACOVA_02035 0.82 -0.2
338,507 + BACOVA_02035 0.88 +0.5
338,507 + BACOVA_02035 0.88 -2.2
338,509 + BACOVA_02035 0.88 -0.4
338,510 - BACOVA_02035 0.88 +2.6
338,537 - +0.2
338,540 + +0.7
338,541 - +0.0
338,574 + -0.7
338,575 - -0.9
338,600 + -0.7
338,623 + -0.7
338,623 + +2.4
338,624 - -0.2
338,643 + +1.0
338,644 - -0.9
338,645 + +1.1
338,645 + +0.8
338,645 + +2.3
338,645 + +0.7
338,645 + +1.4
338,645 + +1.4
338,649 + +1.1
338,649 + +0.8
338,652 - +0.6
338,708 + -0.1
338,708 + +0.8
338,708 + -1.8
338,709 - +0.3
338,741 + BACOVA_02036 0.11 +2.2
338,742 - BACOVA_02036 0.11 -0.8
338,775 + BACOVA_02036 0.15 +1.5
338,783 - BACOVA_02036 0.16 +1.5
338,808 + BACOVA_02036 0.18 -0.2
338,808 + BACOVA_02036 0.18 +1.4
338,808 + BACOVA_02036 0.18 +3.4
338,808 + BACOVA_02036 0.18 -1.0
338,808 + BACOVA_02036 0.18 +1.6
338,808 + BACOVA_02036 0.18 +0.4
338,808 + BACOVA_02036 0.18 -0.6
338,808 + BACOVA_02036 0.18 +1.3
338,808 + BACOVA_02036 0.18 +2.4
338,809 - BACOVA_02036 0.18 +1.0
338,809 - BACOVA_02036 0.18 -1.2
338,809 - BACOVA_02036 0.18 +1.5
338,809 - BACOVA_02036 0.18 +0.8
338,809 - BACOVA_02036 0.18 +0.7
338,809 - BACOVA_02036 0.18 +0.6

Or see this region's nucleotide sequence