Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01247

Experiment: D-Galactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01246 and BACOVA_01247 are separated by 27 nucleotidesBACOVA_01247 and BACOVA_01248 are separated by 23 nucleotides BACOVA_01246: BACOVA_01246 - PQQ enzyme repeat protein, at 28,538 to 30,502 _01246 BACOVA_01247: BACOVA_01247 - SusD family protein, at 30,530 to 31,921 _01247 BACOVA_01248: BACOVA_01248 - TonB-linked outer membrane protein, SusC/RagA family, at 31,945 to 35,388 _01248 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 29.539 kb on - strand, within BACOVA_01246at 29.582 kb on + strand, within BACOVA_01246at 29.582 kb on + strand, within BACOVA_01246at 29.582 kb on + strand, within BACOVA_01246at 29.583 kb on - strand, within BACOVA_01246at 29.583 kb on - strand, within BACOVA_01246at 29.583 kb on - strand, within BACOVA_01246at 29.583 kb on - strand, within BACOVA_01246at 29.630 kb on - strand, within BACOVA_01246at 29.674 kb on + strand, within BACOVA_01246at 29.674 kb on + strand, within BACOVA_01246at 29.674 kb on + strand, within BACOVA_01246at 29.675 kb on - strand, within BACOVA_01246at 29.677 kb on + strand, within BACOVA_01246at 29.683 kb on - strand, within BACOVA_01246at 29.683 kb on - strand, within BACOVA_01246at 29.705 kb on - strand, within BACOVA_01246at 29.705 kb on - strand, within BACOVA_01246at 29.706 kb on + strand, within BACOVA_01246at 29.706 kb on + strand, within BACOVA_01246at 29.711 kb on - strand, within BACOVA_01246at 29.720 kb on - strand, within BACOVA_01246at 29.723 kb on + strand, within BACOVA_01246at 29.723 kb on - strand, within BACOVA_01246at 29.723 kb on - strand, within BACOVA_01246at 29.759 kb on - strand, within BACOVA_01246at 29.808 kb on + strand, within BACOVA_01246at 29.808 kb on + strand, within BACOVA_01246at 29.808 kb on + strand, within BACOVA_01246at 29.809 kb on - strand, within BACOVA_01246at 29.809 kb on - strand, within BACOVA_01246at 29.812 kb on + strand, within BACOVA_01246at 29.812 kb on + strand, within BACOVA_01246at 29.813 kb on - strand, within BACOVA_01246at 29.813 kb on - strand, within BACOVA_01246at 29.874 kb on + strand, within BACOVA_01246at 29.874 kb on + strand, within BACOVA_01246at 29.891 kb on - strand, within BACOVA_01246at 29.939 kb on + strand, within BACOVA_01246at 29.940 kb on - strand, within BACOVA_01246at 29.950 kb on + strand, within BACOVA_01246at 29.951 kb on - strand, within BACOVA_01246at 29.951 kb on - strand, within BACOVA_01246at 29.986 kb on - strand, within BACOVA_01246at 29.986 kb on - strand, within BACOVA_01246at 30.001 kb on + strand, within BACOVA_01246at 30.002 kb on - strand, within BACOVA_01246at 30.167 kb on - strand, within BACOVA_01246at 30.349 kb on - strandat 30.349 kb on - strandat 30.376 kb on + strandat 30.377 kb on - strandat 30.411 kb on + strandat 30.414 kb on - strandat 30.484 kb on + strandat 30.486 kb on + strandat 30.488 kb on + strandat 30.489 kb on - strandat 30.522 kb on + strandat 30.529 kb on - strandat 30.532 kb on - strandat 30.532 kb on - strandat 30.595 kb on + strandat 30.612 kb on + strandat 30.622 kb on + strandat 30.622 kb on + strandat 30.644 kb on - strandat 30.652 kb on + strandat 30.724 kb on + strand, within BACOVA_01247at 30.725 kb on - strand, within BACOVA_01247at 30.764 kb on + strand, within BACOVA_01247at 30.793 kb on + strand, within BACOVA_01247at 30.817 kb on + strand, within BACOVA_01247at 30.817 kb on + strand, within BACOVA_01247at 30.839 kb on - strand, within BACOVA_01247at 30.844 kb on - strand, within BACOVA_01247at 30.870 kb on + strand, within BACOVA_01247at 30.870 kb on + strand, within BACOVA_01247at 30.870 kb on + strand, within BACOVA_01247at 30.901 kb on + strand, within BACOVA_01247at 30.922 kb on + strand, within BACOVA_01247at 30.925 kb on + strand, within BACOVA_01247at 30.926 kb on - strand, within BACOVA_01247at 30.927 kb on + strand, within BACOVA_01247at 30.928 kb on - strand, within BACOVA_01247at 30.928 kb on - strand, within BACOVA_01247at 30.956 kb on - strand, within BACOVA_01247at 30.968 kb on + strand, within BACOVA_01247at 30.969 kb on - strand, within BACOVA_01247at 30.969 kb on - strand, within BACOVA_01247at 30.986 kb on + strand, within BACOVA_01247at 30.990 kb on + strand, within BACOVA_01247at 30.990 kb on + strand, within BACOVA_01247at 30.991 kb on - strand, within BACOVA_01247at 30.994 kb on + strand, within BACOVA_01247at 31.026 kb on + strand, within BACOVA_01247at 31.078 kb on + strand, within BACOVA_01247at 31.078 kb on + strand, within BACOVA_01247at 31.078 kb on + strand, within BACOVA_01247at 31.078 kb on + strand, within BACOVA_01247at 31.089 kb on + strand, within BACOVA_01247at 31.089 kb on + strand, within BACOVA_01247at 31.319 kb on + strand, within BACOVA_01247at 31.319 kb on + strand, within BACOVA_01247at 31.319 kb on + strand, within BACOVA_01247at 31.320 kb on - strand, within BACOVA_01247at 31.322 kb on - strand, within BACOVA_01247at 31.322 kb on - strand, within BACOVA_01247at 31.322 kb on - strand, within BACOVA_01247at 31.339 kb on + strand, within BACOVA_01247at 31.340 kb on - strand, within BACOVA_01247at 31.340 kb on - strand, within BACOVA_01247at 31.348 kb on + strand, within BACOVA_01247at 31.444 kb on + strand, within BACOVA_01247at 31.473 kb on + strand, within BACOVA_01247at 31.478 kb on - strand, within BACOVA_01247at 31.478 kb on - strand, within BACOVA_01247at 31.481 kb on - strand, within BACOVA_01247at 31.481 kb on - strand, within BACOVA_01247at 31.481 kb on - strand, within BACOVA_01247at 31.485 kb on + strand, within BACOVA_01247at 31.489 kb on + strand, within BACOVA_01247at 31.501 kb on + strand, within BACOVA_01247at 31.564 kb on + strand, within BACOVA_01247at 31.565 kb on - strand, within BACOVA_01247at 31.568 kb on + strand, within BACOVA_01247at 31.571 kb on + strand, within BACOVA_01247at 31.587 kb on + strand, within BACOVA_01247at 31.597 kb on + strand, within BACOVA_01247at 31.709 kb on - strand, within BACOVA_01247at 31.767 kb on + strand, within BACOVA_01247at 31.767 kb on + strand, within BACOVA_01247at 31.785 kb on - strandat 31.789 kb on + strandat 31.807 kb on + strandat 31.807 kb on + strandat 31.807 kb on + strandat 31.810 kb on - strandat 31.811 kb on + strandat 31.812 kb on - strandat 31.812 kb on - strandat 31.834 kb on + strandat 31.858 kb on + strandat 31.859 kb on - strandat 31.899 kb on - strandat 31.901 kb on + strandat 31.905 kb on - strandat 31.954 kb on + strandat 31.980 kb on + strandat 31.980 kb on + strandat 31.991 kb on + strandat 31.992 kb on - strandat 32.001 kb on - strandat 32.052 kb on + strandat 32.061 kb on + strandat 32.067 kb on + strandat 32.100 kb on - strandat 32.151 kb on + strandat 32.159 kb on - strandat 32.183 kb on + strandat 32.184 kb on - strandat 32.224 kb on - strandat 32.225 kb on + strandat 32.302 kb on + strand, within BACOVA_01248at 32.303 kb on - strand, within BACOVA_01248at 32.304 kb on + strand, within BACOVA_01248at 32.318 kb on + strand, within BACOVA_01248at 32.323 kb on - strand, within BACOVA_01248at 32.343 kb on - strand, within BACOVA_01248at 32.377 kb on + strand, within BACOVA_01248at 32.378 kb on - strand, within BACOVA_01248at 32.413 kb on - strand, within BACOVA_01248at 32.454 kb on + strand, within BACOVA_01248at 32.454 kb on + strand, within BACOVA_01248at 32.456 kb on + strand, within BACOVA_01248at 32.456 kb on + strand, within BACOVA_01248at 32.456 kb on + strand, within BACOVA_01248at 32.457 kb on - strand, within BACOVA_01248at 32.489 kb on + strand, within BACOVA_01248at 32.541 kb on + strand, within BACOVA_01248at 32.609 kb on + strand, within BACOVA_01248at 32.609 kb on + strand, within BACOVA_01248at 32.613 kb on - strand, within BACOVA_01248at 32.660 kb on - strand, within BACOVA_01248at 32.674 kb on + strand, within BACOVA_01248at 32.674 kb on + strand, within BACOVA_01248at 32.675 kb on - strand, within BACOVA_01248at 32.679 kb on + strand, within BACOVA_01248at 32.719 kb on - strand, within BACOVA_01248at 32.719 kb on - strand, within BACOVA_01248at 32.739 kb on + strand, within BACOVA_01248at 32.764 kb on + strand, within BACOVA_01248at 32.877 kb on + strand, within BACOVA_01248at 32.877 kb on + strand, within BACOVA_01248at 32.892 kb on + strand, within BACOVA_01248at 32.892 kb on + strand, within BACOVA_01248at 32.893 kb on - strand, within BACOVA_01248at 32.896 kb on - strand, within BACOVA_01248at 32.898 kb on - strand, within BACOVA_01248

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
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29,539 - BACOVA_01246 0.51 +0.2
29,582 + BACOVA_01246 0.53 -0.3
29,582 + BACOVA_01246 0.53 -0.3
29,582 + BACOVA_01246 0.53 +0.9
29,583 - BACOVA_01246 0.53 +1.0
29,583 - BACOVA_01246 0.53 +0.3
29,583 - BACOVA_01246 0.53 -0.2
29,583 - BACOVA_01246 0.53 +1.0
29,630 - BACOVA_01246 0.56 -0.3
29,674 + BACOVA_01246 0.58 +0.1
29,674 + BACOVA_01246 0.58 -0.2
29,674 + BACOVA_01246 0.58 -2.7
29,675 - BACOVA_01246 0.58 +0.8
29,677 + BACOVA_01246 0.58 +0.2
29,683 - BACOVA_01246 0.58 -0.5
29,683 - BACOVA_01246 0.58 -0.4
29,705 - BACOVA_01246 0.59 -0.1
29,705 - BACOVA_01246 0.59 -0.7
29,706 + BACOVA_01246 0.59 -2.2
29,706 + BACOVA_01246 0.59 -0.1
29,711 - BACOVA_01246 0.60 +0.6
29,720 - BACOVA_01246 0.60 +1.3
29,723 + BACOVA_01246 0.60 +0.6
29,723 - BACOVA_01246 0.60 +0.5
29,723 - BACOVA_01246 0.60 +0.7
29,759 - BACOVA_01246 0.62 -0.5
29,808 + BACOVA_01246 0.65 -1.1
29,808 + BACOVA_01246 0.65 +0.3
29,808 + BACOVA_01246 0.65 +0.1
29,809 - BACOVA_01246 0.65 +0.9
29,809 - BACOVA_01246 0.65 -0.3
29,812 + BACOVA_01246 0.65 -2.4
29,812 + BACOVA_01246 0.65 +0.0
29,813 - BACOVA_01246 0.65 +0.6
29,813 - BACOVA_01246 0.65 +0.3
29,874 + BACOVA_01246 0.68 +0.5
29,874 + BACOVA_01246 0.68 +0.6
29,891 - BACOVA_01246 0.69 -0.7
29,939 + BACOVA_01246 0.71 -0.9
29,940 - BACOVA_01246 0.71 +0.9
29,950 + BACOVA_01246 0.72 +0.9
29,951 - BACOVA_01246 0.72 -1.1
29,951 - BACOVA_01246 0.72 -1.4
29,986 - BACOVA_01246 0.74 +0.9
29,986 - BACOVA_01246 0.74 +2.7
30,001 + BACOVA_01246 0.74 -0.7
30,002 - BACOVA_01246 0.75 +0.2
30,167 - BACOVA_01246 0.83 +0.2
30,349 - +0.8
30,349 - +0.3
30,376 + +0.7
30,377 - -0.9
30,411 + +0.6
30,414 - +1.6
30,484 + +1.9
30,486 + +0.0
30,488 + -1.4
30,489 - -0.1
30,522 + -0.5
30,529 - +3.6
30,532 - +3.0
30,532 - +2.0
30,595 + +0.6
30,612 + +0.2
30,622 + +0.3
30,622 + -1.0
30,644 - +3.3
30,652 + +0.9
30,724 + BACOVA_01247 0.14 -1.9
30,725 - BACOVA_01247 0.14 +4.3
30,764 + BACOVA_01247 0.17 +1.3
30,793 + BACOVA_01247 0.19 -1.2
30,817 + BACOVA_01247 0.21 +0.3
30,817 + BACOVA_01247 0.21 -0.7
30,839 - BACOVA_01247 0.22 +2.5
30,844 - BACOVA_01247 0.23 +2.5
30,870 + BACOVA_01247 0.24 -1.7
30,870 + BACOVA_01247 0.24 +0.8
30,870 + BACOVA_01247 0.24 +0.1
30,901 + BACOVA_01247 0.27 +1.1
30,922 + BACOVA_01247 0.28 +0.4
30,925 + BACOVA_01247 0.28 +0.4
30,926 - BACOVA_01247 0.28 +5.1
30,927 + BACOVA_01247 0.29 -1.0
30,928 - BACOVA_01247 0.29 +1.6
30,928 - BACOVA_01247 0.29 +4.3
30,956 - BACOVA_01247 0.31 +2.6
30,968 + BACOVA_01247 0.31 -2.1
30,969 - BACOVA_01247 0.32 +2.6
30,969 - BACOVA_01247 0.32 +2.5
30,986 + BACOVA_01247 0.33 +0.5
30,990 + BACOVA_01247 0.33 -1.0
30,990 + BACOVA_01247 0.33 -0.1
30,991 - BACOVA_01247 0.33 +2.4
30,994 + BACOVA_01247 0.33 -0.2
31,026 + BACOVA_01247 0.36 -0.8
31,078 + BACOVA_01247 0.39 +0.1
31,078 + BACOVA_01247 0.39 -0.4
31,078 + BACOVA_01247 0.39 -0.0
31,078 + BACOVA_01247 0.39 -1.9
31,089 + BACOVA_01247 0.40 -0.4
31,089 + BACOVA_01247 0.40 -0.2
31,319 + BACOVA_01247 0.57 +0.3
31,319 + BACOVA_01247 0.57 +0.1
31,319 + BACOVA_01247 0.57 -0.5
31,320 - BACOVA_01247 0.57 +2.5
31,322 - BACOVA_01247 0.57 +1.8
31,322 - BACOVA_01247 0.57 +2.6
31,322 - BACOVA_01247 0.57 +1.7
31,339 + BACOVA_01247 0.58 -0.8
31,340 - BACOVA_01247 0.58 +1.1
31,340 - BACOVA_01247 0.58 +1.0
31,348 + BACOVA_01247 0.59 +0.6
31,444 + BACOVA_01247 0.66 -0.0
31,473 + BACOVA_01247 0.68 -2.2
31,478 - BACOVA_01247 0.68 +2.5
31,478 - BACOVA_01247 0.68 +1.9
31,481 - BACOVA_01247 0.68 +1.9
31,481 - BACOVA_01247 0.68 +2.3
31,481 - BACOVA_01247 0.68 +1.4
31,485 + BACOVA_01247 0.69 +1.3
31,489 + BACOVA_01247 0.69 -1.7
31,501 + BACOVA_01247 0.70 -0.8
31,564 + BACOVA_01247 0.74 -3.2
31,565 - BACOVA_01247 0.74 +0.0
31,568 + BACOVA_01247 0.75 +0.4
31,571 + BACOVA_01247 0.75 +0.1
31,587 + BACOVA_01247 0.76 +0.5
31,597 + BACOVA_01247 0.77 -0.3
31,709 - BACOVA_01247 0.85 +1.0
31,767 + BACOVA_01247 0.89 -0.4
31,767 + BACOVA_01247 0.89 +2.2
31,785 - +0.8
31,789 + +0.8
31,807 + +1.7
31,807 + -1.3
31,807 + +1.9
31,810 - +1.0
31,811 + +0.8
31,812 - +0.1
31,812 - +0.3
31,834 + +0.3
31,858 + -0.1
31,859 - +1.3
31,899 - -0.3
31,901 + +0.3
31,905 - -2.2
31,954 + +0.9
31,980 + -1.1
31,980 + +1.5
31,991 + -2.1
31,992 - +2.7
32,001 - +3.4
32,052 + -1.1
32,061 + +0.3
32,067 + -2.1
32,100 - +2.5
32,151 + -0.7
32,159 - +3.1
32,183 + -0.0
32,184 - +1.9
32,224 - +2.0
32,225 + -0.0
32,302 + BACOVA_01248 0.10 -0.3
32,303 - BACOVA_01248 0.10 +0.0
32,304 + BACOVA_01248 0.10 -0.7
32,318 + BACOVA_01248 0.11 -1.1
32,323 - BACOVA_01248 0.11 +1.7
32,343 - BACOVA_01248 0.12 +3.4
32,377 + BACOVA_01248 0.13 +0.6
32,378 - BACOVA_01248 0.13 +3.0
32,413 - BACOVA_01248 0.14 +2.5
32,454 + BACOVA_01248 0.15 -0.1
32,454 + BACOVA_01248 0.15 -1.8
32,456 + BACOVA_01248 0.15 -0.2
32,456 + BACOVA_01248 0.15 -1.9
32,456 + BACOVA_01248 0.15 -0.1
32,457 - BACOVA_01248 0.15 +2.0
32,489 + BACOVA_01248 0.16 +0.0
32,541 + BACOVA_01248 0.17 +0.2
32,609 + BACOVA_01248 0.19 +2.5
32,609 + BACOVA_01248 0.19 +1.4
32,613 - BACOVA_01248 0.19 +0.9
32,660 - BACOVA_01248 0.21 +2.2
32,674 + BACOVA_01248 0.21 -0.7
32,674 + BACOVA_01248 0.21 -1.4
32,675 - BACOVA_01248 0.21 +1.3
32,679 + BACOVA_01248 0.21 -2.4
32,719 - BACOVA_01248 0.22 -1.1
32,719 - BACOVA_01248 0.22 +1.3
32,739 + BACOVA_01248 0.23 -1.6
32,764 + BACOVA_01248 0.24 -1.2
32,877 + BACOVA_01248 0.27 -0.1
32,877 + BACOVA_01248 0.27 +0.9
32,892 + BACOVA_01248 0.27 -0.1
32,892 + BACOVA_01248 0.27 +0.9
32,893 - BACOVA_01248 0.28 +2.8
32,896 - BACOVA_01248 0.28 +0.8
32,898 - BACOVA_01248 0.28 +2.0

Or see this region's nucleotide sequence