Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00827 and BACOVA_00828 are separated by 29 nucleotides BACOVA_00828 and BACOVA_00829 overlap by 4 nucleotides BACOVA_00829 and BACOVA_00830 are separated by 12 nucleotides
BACOVA_00827: BACOVA_00827 - hypothetical protein, at 77,734 to 79,014
_00827
BACOVA_00828: BACOVA_00828 - cytochrome c assembly protein, at 79,044 to 79,835
_00828
BACOVA_00829: BACOVA_00829 - hypothetical protein, at 79,832 to 81,055
_00829
BACOVA_00830: BACOVA_00830 - nitrite reductase, at 81,068 to 82,549
_00830
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 78.852 kb on + strand, within BACOVA_00827 at 78.853 kb on - strand, within BACOVA_00827 at 78.853 kb on - strand, within BACOVA_00827 at 78.859 kb on + strand, within BACOVA_00827 at 78.936 kb on - strand at 78.961 kb on - strand at 78.961 kb on - strand at 78.963 kb on - strand at 78.980 kb on - strand at 78.985 kb on - strand at 78.985 kb on - strand at 79.001 kb on + strand at 79.051 kb on - strand at 79.058 kb on - strand at 79.061 kb on + strand at 79.137 kb on + strand, within BACOVA_00828 at 79.138 kb on - strand, within BACOVA_00828 at 79.138 kb on - strand, within BACOVA_00828 at 79.194 kb on - strand, within BACOVA_00828 at 79.194 kb on - strand, within BACOVA_00828 at 79.195 kb on + strand, within BACOVA_00828 at 79.195 kb on + strand, within BACOVA_00828 at 79.196 kb on - strand, within BACOVA_00828 at 79.205 kb on - strand, within BACOVA_00828 at 79.217 kb on + strand, within BACOVA_00828 at 79.299 kb on - strand, within BACOVA_00828 at 79.302 kb on + strand, within BACOVA_00828 at 79.303 kb on - strand, within BACOVA_00828 at 79.303 kb on - strand, within BACOVA_00828 at 79.303 kb on - strand, within BACOVA_00828 at 79.310 kb on + strand, within BACOVA_00828 at 79.323 kb on + strand, within BACOVA_00828 at 79.323 kb on + strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.328 kb on - strand, within BACOVA_00828 at 79.425 kb on - strand, within BACOVA_00828 at 79.429 kb on + strand, within BACOVA_00828 at 79.430 kb on - strand, within BACOVA_00828 at 79.440 kb on - strand, within BACOVA_00828 at 79.441 kb on + strand, within BACOVA_00828 at 79.441 kb on + strand, within BACOVA_00828 at 79.441 kb on + strand, within BACOVA_00828 at 79.441 kb on + strand, within BACOVA_00828 at 79.442 kb on - strand, within BACOVA_00828 at 79.488 kb on + strand, within BACOVA_00828 at 79.497 kb on - strand, within BACOVA_00828 at 79.532 kb on + strand, within BACOVA_00828 at 79.533 kb on - strand, within BACOVA_00828 at 79.577 kb on - strand, within BACOVA_00828 at 79.591 kb on + strand, within BACOVA_00828 at 79.627 kb on + strand, within BACOVA_00828 at 79.671 kb on + strand, within BACOVA_00828 at 79.815 kb on + strand at 79.816 kb on - strand at 79.818 kb on - strand at 79.818 kb on - strand at 79.822 kb on + strand at 79.901 kb on + strand at 79.901 kb on + strand at 79.901 kb on + strand at 79.904 kb on + strand at 79.993 kb on + strand, within BACOVA_00829 at 79.994 kb on - strand, within BACOVA_00829 at 80.123 kb on + strand, within BACOVA_00829 at 80.128 kb on + strand, within BACOVA_00829 at 80.186 kb on + strand, within BACOVA_00829 at 80.244 kb on + strand, within BACOVA_00829 at 80.244 kb on + strand, within BACOVA_00829 at 80.245 kb on - strand, within BACOVA_00829 at 80.245 kb on - strand, within BACOVA_00829 at 80.329 kb on + strand, within BACOVA_00829 at 80.382 kb on - strand, within BACOVA_00829 at 80.387 kb on + strand, within BACOVA_00829 at 80.387 kb on + strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.410 kb on + strand, within BACOVA_00829 at 80.451 kb on + strand, within BACOVA_00829 at 80.512 kb on + strand, within BACOVA_00829 at 80.609 kb on - strand, within BACOVA_00829 at 80.620 kb on + strand, within BACOVA_00829 at 80.831 kb on + strand, within BACOVA_00829 at 80.831 kb on + strand, within BACOVA_00829 at 80.832 kb on - strand, within BACOVA_00829 at 80.854 kb on - strand, within BACOVA_00829 at 80.877 kb on + strand, within BACOVA_00829 at 80.877 kb on + strand, within BACOVA_00829 at 80.878 kb on - strand, within BACOVA_00829 at 80.922 kb on + strand, within BACOVA_00829 at 80.923 kb on - strand, within BACOVA_00829 at 80.931 kb on - strand, within BACOVA_00829 at 80.973 kb on - strand at 80.973 kb on - strand at 81.006 kb on - strand at 81.055 kb on + strand at 81.056 kb on - strand at 81.056 kb on - strand at 81.057 kb on + strand at 81.057 kb on + strand at 81.058 kb on - strand at 81.058 kb on - strand at 81.059 kb on + strand at 81.179 kb on - strand at 81.180 kb on + strand at 81.181 kb on - strand at 81.181 kb on - strand at 81.232 kb on + strand, within BACOVA_00830 at 81.233 kb on - strand, within BACOVA_00830 at 81.252 kb on - strand, within BACOVA_00830 at 81.445 kb on + strand, within BACOVA_00830 at 81.455 kb on - strand, within BACOVA_00830 at 81.519 kb on + strand, within BACOVA_00830 at 81.527 kb on - strand, within BACOVA_00830 at 81.529 kb on + strand, within BACOVA_00830 at 81.530 kb on - strand, within BACOVA_00830 at 81.533 kb on + strand, within BACOVA_00830 at 81.533 kb on + strand, within BACOVA_00830 at 81.584 kb on - strand, within BACOVA_00830 at 81.637 kb on + strand, within BACOVA_00830 at 81.640 kb on - strand, within BACOVA_00830 at 81.749 kb on - strand, within BACOVA_00830 at 81.754 kb on + strand, within BACOVA_00830 at 81.755 kb on - strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.757 kb on - strand, within BACOVA_00830 at 81.762 kb on + strand, within BACOVA_00830 at 81.763 kb on - strand, within BACOVA_00830 at 81.780 kb on + strand, within BACOVA_00830 at 81.781 kb on - strand, within BACOVA_00830 at 81.783 kb on + strand, within BACOVA_00830 at 81.784 kb on - strand, within BACOVA_00830 at 81.784 kb on - strand, within BACOVA_00830 at 81.800 kb on + strand, within BACOVA_00830 at 81.806 kb on - strand, within BACOVA_00830 at 81.834 kb on + strand, within BACOVA_00830 at 81.838 kb on + strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.881 kb on + strand, within BACOVA_00830 at 81.881 kb on + strand, within BACOVA_00830 at 81.907 kb on + strand, within BACOVA_00830 at 81.913 kb on + strand, within BACOVA_00830 at 81.948 kb on - strand, within BACOVA_00830 at 81.967 kb on + strand, within BACOVA_00830 at 81.968 kb on - strand, within BACOVA_00830 at 82.036 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.049 kb on - strand, within BACOVA_00830 at 82.049 kb on - strand, within BACOVA_00830 at 82.054 kb on + strand, within BACOVA_00830 at 82.055 kb on - strand, within BACOVA_00830
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 78,852 + BACOVA_00827 0.87 -1.3 78,853 - BACOVA_00827 0.87 -0.4 78,853 - BACOVA_00827 0.87 -0.1 78,859 + BACOVA_00827 0.88 +0.2 78,936 - -0.6 78,961 - -1.6 78,961 - -0.8 78,963 - -0.3 78,980 - -0.1 78,985 - -0.5 78,985 - +0.5 79,001 + -1.1 79,051 - -0.3 79,058 - -2.1 79,061 + -1.0 79,137 + BACOVA_00828 0.12 +1.3 79,138 - BACOVA_00828 0.12 -0.5 79,138 - BACOVA_00828 0.12 +0.0 79,194 - BACOVA_00828 0.19 -2.6 79,194 - BACOVA_00828 0.19 -1.9 79,195 + BACOVA_00828 0.19 -0.2 79,195 + BACOVA_00828 0.19 -0.1 79,196 - BACOVA_00828 0.19 +1.6 79,205 - BACOVA_00828 0.20 +1.0 79,217 + BACOVA_00828 0.22 +0.1 79,299 - BACOVA_00828 0.32 -1.6 79,302 + BACOVA_00828 0.33 +0.0 79,303 - BACOVA_00828 0.33 +0.6 79,303 - BACOVA_00828 0.33 +0.0 79,303 - BACOVA_00828 0.33 +2.4 79,310 + BACOVA_00828 0.34 +0.2 79,323 + BACOVA_00828 0.35 -0.2 79,323 + BACOVA_00828 0.35 +0.6 79,324 - BACOVA_00828 0.35 +1.0 79,324 - BACOVA_00828 0.35 +0.0 79,324 - BACOVA_00828 0.35 -0.6 79,324 - BACOVA_00828 0.35 -0.1 79,324 - BACOVA_00828 0.35 +0.7 79,324 - BACOVA_00828 0.35 -0.1 79,324 - BACOVA_00828 0.35 -0.5 79,324 - BACOVA_00828 0.35 +0.7 79,328 - BACOVA_00828 0.36 +1.0 79,425 - BACOVA_00828 0.48 +0.6 79,429 + BACOVA_00828 0.49 -1.0 79,430 - BACOVA_00828 0.49 -0.1 79,440 - BACOVA_00828 0.50 +0.7 79,441 + BACOVA_00828 0.50 -0.3 79,441 + BACOVA_00828 0.50 +0.7 79,441 + BACOVA_00828 0.50 +1.0 79,441 + BACOVA_00828 0.50 -0.6 79,442 - BACOVA_00828 0.50 -0.8 79,488 + BACOVA_00828 0.56 -1.1 79,497 - BACOVA_00828 0.57 +1.0 79,532 + BACOVA_00828 0.62 +0.9 79,533 - BACOVA_00828 0.62 +0.0 79,577 - BACOVA_00828 0.67 -0.7 79,591 + BACOVA_00828 0.69 +1.2 79,627 + BACOVA_00828 0.74 -0.3 79,671 + BACOVA_00828 0.79 -0.8 79,815 + -2.0 79,816 - +0.2 79,818 - -4.0 79,818 - -0.6 79,822 + +0.9 79,901 + -0.9 79,901 + +0.6 79,901 + -0.3 79,904 + -0.7 79,993 + BACOVA_00829 0.13 -1.2 79,994 - BACOVA_00829 0.13 -1.0 80,123 + BACOVA_00829 0.24 -2.7 80,128 + BACOVA_00829 0.24 +0.0 80,186 + BACOVA_00829 0.29 -0.2 80,244 + BACOVA_00829 0.34 +1.4 80,244 + BACOVA_00829 0.34 -0.7 80,245 - BACOVA_00829 0.34 -1.3 80,245 - BACOVA_00829 0.34 -0.8 80,329 + BACOVA_00829 0.41 -0.8 80,382 - BACOVA_00829 0.45 -0.6 80,387 + BACOVA_00829 0.45 -0.1 80,387 + BACOVA_00829 0.45 -0.3 80,388 - BACOVA_00829 0.45 +1.0 80,388 - BACOVA_00829 0.45 +1.3 80,388 - BACOVA_00829 0.45 -0.7 80,410 + BACOVA_00829 0.47 -1.3 80,451 + BACOVA_00829 0.51 -2.1 80,512 + BACOVA_00829 0.56 +0.2 80,609 - BACOVA_00829 0.63 +1.0 80,620 + BACOVA_00829 0.64 -1.9 80,831 + BACOVA_00829 0.82 +1.3 80,831 + BACOVA_00829 0.82 -0.8 80,832 - BACOVA_00829 0.82 +0.1 80,854 - BACOVA_00829 0.83 -0.6 80,877 + BACOVA_00829 0.85 +1.6 80,877 + BACOVA_00829 0.85 +0.5 80,878 - BACOVA_00829 0.85 +0.1 80,922 + BACOVA_00829 0.89 +1.7 80,923 - BACOVA_00829 0.89 +0.3 80,931 - BACOVA_00829 0.90 +0.9 80,973 - -0.0 80,973 - -1.0 81,006 - -1.0 81,055 + +0.7 81,056 - +0.0 81,056 - -2.6 81,057 + +1.7 81,057 + +0.4 81,058 - -0.7 81,058 - +0.1 81,059 + -1.3 81,179 - +0.1 81,180 + +1.4 81,181 - +0.7 81,181 - -0.2 81,232 + BACOVA_00830 0.11 +2.0 81,233 - BACOVA_00830 0.11 -0.2 81,252 - BACOVA_00830 0.12 -1.7 81,445 + BACOVA_00830 0.25 +0.6 81,455 - BACOVA_00830 0.26 +0.3 81,519 + BACOVA_00830 0.30 +0.5 81,527 - BACOVA_00830 0.31 +0.2 81,529 + BACOVA_00830 0.31 +1.0 81,530 - BACOVA_00830 0.31 +1.2 81,533 + BACOVA_00830 0.31 +0.1 81,533 + BACOVA_00830 0.31 -0.2 81,584 - BACOVA_00830 0.35 -1.0 81,637 + BACOVA_00830 0.38 +0.3 81,640 - BACOVA_00830 0.39 +0.4 81,749 - BACOVA_00830 0.46 +0.8 81,754 + BACOVA_00830 0.46 -0.6 81,755 - BACOVA_00830 0.46 +0.5 81,756 + BACOVA_00830 0.46 +0.2 81,756 + BACOVA_00830 0.46 +0.5 81,756 + BACOVA_00830 0.46 -0.6 81,757 - BACOVA_00830 0.46 -0.2 81,762 + BACOVA_00830 0.47 -0.3 81,763 - BACOVA_00830 0.47 -1.8 81,780 + BACOVA_00830 0.48 +1.0 81,781 - BACOVA_00830 0.48 +1.0 81,783 + BACOVA_00830 0.48 -1.8 81,784 - BACOVA_00830 0.48 -0.4 81,784 - BACOVA_00830 0.48 +0.5 81,800 + BACOVA_00830 0.49 +0.8 81,806 - BACOVA_00830 0.50 +1.2 81,834 + BACOVA_00830 0.52 -0.4 81,838 + BACOVA_00830 0.52 +1.8 81,839 - BACOVA_00830 0.52 +1.6 81,839 - BACOVA_00830 0.52 -1.8 81,839 - BACOVA_00830 0.52 +0.2 81,881 + BACOVA_00830 0.55 +0.0 81,881 + BACOVA_00830 0.55 +0.1 81,907 + BACOVA_00830 0.57 +0.6 81,913 + BACOVA_00830 0.57 -0.7 81,948 - BACOVA_00830 0.59 -0.1 81,967 + BACOVA_00830 0.61 +0.0 81,968 - BACOVA_00830 0.61 +0.7 82,036 + BACOVA_00830 0.65 +0.0 82,048 + BACOVA_00830 0.66 -1.3 82,048 + BACOVA_00830 0.66 +1.7 82,048 + BACOVA_00830 0.66 -0.1 82,049 - BACOVA_00830 0.66 +0.3 82,049 - BACOVA_00830 0.66 +1.0 82,054 + BACOVA_00830 0.67 -0.9 82,055 - BACOVA_00830 0.67 -0.8
Or see this region's nucleotide sequence