Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00616 and BACOVA_00617 are separated by 77 nucleotides BACOVA_00617 and BACOVA_00618 are separated by 90 nucleotides BACOVA_00618 and BACOVA_00619 are separated by 57 nucleotides BACOVA_00619 and BACOVA_00620 are separated by 62 nucleotides
BACOVA_00616: BACOVA_00616 - hypothetical protein, at 54,515 to 55,138
_00616
BACOVA_00617: BACOVA_00617 - hypothetical protein, at 55,216 to 55,617
_00617
BACOVA_00618: BACOVA_00618 - clostripain family, at 55,708 to 56,898
_00618
BACOVA_00619: BACOVA_00619 - RNA polymerase sigma factor, sigma-70 family, at 56,956 to 57,501
_00619
BACOVA_00620: BACOVA_00620 - sigma factor regulatory protein, FecR/PupR family, at 57,564 to 58,736
_00620
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.773 kb on + strand, within BACOVA_00616 at 54.773 kb on + strand, within BACOVA_00616 at 54.774 kb on - strand, within BACOVA_00616 at 54.809 kb on - strand, within BACOVA_00616 at 54.847 kb on + strand, within BACOVA_00616 at 54.848 kb on - strand, within BACOVA_00616 at 54.851 kb on + strand, within BACOVA_00616 at 54.851 kb on + strand, within BACOVA_00616 at 54.852 kb on - strand, within BACOVA_00616 at 54.872 kb on + strand, within BACOVA_00616 at 54.872 kb on + strand, within BACOVA_00616 at 54.894 kb on - strand, within BACOVA_00616 at 54.920 kb on + strand, within BACOVA_00616 at 54.927 kb on + strand, within BACOVA_00616 at 54.953 kb on - strand, within BACOVA_00616 at 54.969 kb on - strand, within BACOVA_00616 at 54.970 kb on + strand, within BACOVA_00616 at 54.971 kb on - strand, within BACOVA_00616 at 55.014 kb on - strand, within BACOVA_00616 at 55.014 kb on - strand, within BACOVA_00616 at 55.014 kb on - strand, within BACOVA_00616 at 55.056 kb on + strand, within BACOVA_00616 at 55.130 kb on + strand at 55.131 kb on - strand at 55.150 kb on + strand at 55.150 kb on + strand at 55.163 kb on + strand at 55.164 kb on - strand at 55.164 kb on - strand at 55.169 kb on + strand at 55.170 kb on - strand at 55.208 kb on + strand at 55.209 kb on - strand at 55.209 kb on - strand at 55.211 kb on - strand at 55.215 kb on + strand at 55.215 kb on + strand at 55.306 kb on + strand, within BACOVA_00617 at 55.339 kb on - strand, within BACOVA_00617 at 55.343 kb on + strand, within BACOVA_00617 at 55.343 kb on + strand, within BACOVA_00617 at 55.344 kb on - strand, within BACOVA_00617 at 55.344 kb on - strand, within BACOVA_00617 at 55.368 kb on - strand, within BACOVA_00617 at 55.370 kb on + strand, within BACOVA_00617 at 55.370 kb on + strand, within BACOVA_00617 at 55.371 kb on - strand, within BACOVA_00617 at 55.420 kb on + strand, within BACOVA_00617 at 55.421 kb on - strand, within BACOVA_00617 at 55.422 kb on + strand, within BACOVA_00617 at 55.423 kb on - strand, within BACOVA_00617 at 55.426 kb on + strand, within BACOVA_00617 at 55.470 kb on + strand, within BACOVA_00617 at 55.473 kb on + strand, within BACOVA_00617 at 55.473 kb on + strand, within BACOVA_00617 at 55.474 kb on - strand, within BACOVA_00617 at 55.474 kb on - strand, within BACOVA_00617 at 55.474 kb on - strand, within BACOVA_00617 at 55.480 kb on - strand, within BACOVA_00617 at 55.487 kb on - strand, within BACOVA_00617 at 55.544 kb on - strand, within BACOVA_00617 at 55.555 kb on - strand, within BACOVA_00617 at 55.618 kb on + strand at 55.629 kb on + strand at 55.629 kb on + strand at 55.642 kb on + strand at 55.677 kb on + strand at 55.690 kb on + strand at 55.724 kb on + strand at 55.750 kb on - strand at 55.803 kb on + strand at 55.803 kb on + strand at 55.804 kb on - strand at 55.804 kb on - strand at 55.816 kb on + strand at 55.816 kb on + strand at 55.900 kb on - strand, within BACOVA_00618 at 55.906 kb on + strand, within BACOVA_00618 at 55.907 kb on - strand, within BACOVA_00618 at 55.921 kb on + strand, within BACOVA_00618 at 55.994 kb on + strand, within BACOVA_00618 at 56.005 kb on + strand, within BACOVA_00618 at 56.006 kb on - strand, within BACOVA_00618 at 56.024 kb on + strand, within BACOVA_00618 at 56.087 kb on - strand, within BACOVA_00618 at 56.196 kb on - strand, within BACOVA_00618 at 56.253 kb on + strand, within BACOVA_00618 at 56.253 kb on + strand, within BACOVA_00618 at 56.299 kb on + strand, within BACOVA_00618 at 56.299 kb on + strand, within BACOVA_00618 at 56.303 kb on + strand, within BACOVA_00618 at 56.304 kb on - strand, within BACOVA_00618 at 56.306 kb on + strand, within BACOVA_00618 at 56.306 kb on + strand, within BACOVA_00618 at 56.306 kb on + strand, within BACOVA_00618 at 56.306 kb on + strand, within BACOVA_00618 at 56.306 kb on + strand, within BACOVA_00618 at 56.307 kb on - strand, within BACOVA_00618 at 56.354 kb on + strand, within BACOVA_00618 at 56.377 kb on - strand, within BACOVA_00618 at 56.396 kb on + strand, within BACOVA_00618 at 56.396 kb on + strand, within BACOVA_00618 at 56.437 kb on + strand, within BACOVA_00618 at 56.458 kb on - strand, within BACOVA_00618 at 56.458 kb on - strand, within BACOVA_00618 at 56.458 kb on - strand, within BACOVA_00618 at 56.468 kb on + strand, within BACOVA_00618 at 56.544 kb on + strand, within BACOVA_00618 at 56.544 kb on + strand, within BACOVA_00618 at 56.563 kb on + strand, within BACOVA_00618 at 56.569 kb on - strand, within BACOVA_00618 at 56.600 kb on + strand, within BACOVA_00618 at 56.601 kb on - strand, within BACOVA_00618 at 56.609 kb on - strand, within BACOVA_00618 at 56.630 kb on - strand, within BACOVA_00618 at 56.630 kb on - strand, within BACOVA_00618 at 56.633 kb on - strand, within BACOVA_00618 at 56.655 kb on - strand, within BACOVA_00618 at 56.704 kb on + strand, within BACOVA_00618 at 56.704 kb on + strand, within BACOVA_00618 at 56.734 kb on - strand, within BACOVA_00618 at 56.734 kb on - strand, within BACOVA_00618 at 56.743 kb on - strand, within BACOVA_00618 at 56.796 kb on + strand at 56.796 kb on + strand at 56.797 kb on - strand at 56.800 kb on + strand at 56.801 kb on - strand at 56.805 kb on - strand at 56.818 kb on + strand at 56.831 kb on + strand at 56.832 kb on - strand at 56.832 kb on - strand at 56.856 kb on - strand at 56.856 kb on - strand at 56.864 kb on - strand at 56.864 kb on - strand at 56.899 kb on + strand at 56.900 kb on - strand at 56.903 kb on + strand at 56.921 kb on + strand at 56.922 kb on - strand at 56.922 kb on - strand at 56.936 kb on + strand at 56.952 kb on + strand at 56.952 kb on + strand at 56.953 kb on - strand at 56.965 kb on - strand at 56.965 kb on - strand at 56.975 kb on + strand at 56.976 kb on - strand at 56.976 kb on - strand at 56.977 kb on + strand at 56.979 kb on + strand at 56.979 kb on + strand at 56.980 kb on - strand at 56.980 kb on - strand at 56.980 kb on - strand at 56.980 kb on - strand at 56.989 kb on + strand at 57.171 kb on + strand, within BACOVA_00619 at 57.220 kb on + strand, within BACOVA_00619 at 57.221 kb on - strand, within BACOVA_00619 at 57.221 kb on - strand, within BACOVA_00619 at 57.221 kb on - strand, within BACOVA_00619 at 57.223 kb on - strand, within BACOVA_00619 at 57.258 kb on - strand, within BACOVA_00619 at 57.342 kb on - strand, within BACOVA_00619 at 57.399 kb on - strand, within BACOVA_00619 at 57.500 kb on - strand at 57.730 kb on + strand, within BACOVA_00620 at 57.731 kb on - strand, within BACOVA_00620 at 57.731 kb on - strand, within BACOVA_00620 at 57.791 kb on + strand, within BACOVA_00620 at 57.791 kb on + strand, within BACOVA_00620 at 57.794 kb on - strand, within BACOVA_00620 at 57.818 kb on + strand, within BACOVA_00620 at 57.838 kb on + strand, within BACOVA_00620 at 57.838 kb on + strand, within BACOVA_00620 at 57.839 kb on - strand, within BACOVA_00620 at 57.842 kb on + strand, within BACOVA_00620 at 57.842 kb on + strand, within BACOVA_00620 at 57.843 kb on - strand, within BACOVA_00620 at 57.869 kb on - strand, within BACOVA_00620 at 57.869 kb on - strand, within BACOVA_00620 at 57.871 kb on + strand, within BACOVA_00620 at 57.872 kb on - strand, within BACOVA_00620 at 57.875 kb on - strand, within BACOVA_00620 at 57.875 kb on - strand, within BACOVA_00620 at 57.875 kb on - strand, within BACOVA_00620 at 57.875 kb on - strand, within BACOVA_00620 at 57.875 kb on - strand, within BACOVA_00620
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 54,773 + BACOVA_00616 0.41 -0.2 54,773 + BACOVA_00616 0.41 -0.9 54,774 - BACOVA_00616 0.42 +1.2 54,809 - BACOVA_00616 0.47 -0.1 54,847 + BACOVA_00616 0.53 +0.5 54,848 - BACOVA_00616 0.53 +0.2 54,851 + BACOVA_00616 0.54 -1.5 54,851 + BACOVA_00616 0.54 +0.8 54,852 - BACOVA_00616 0.54 +0.4 54,872 + BACOVA_00616 0.57 +0.5 54,872 + BACOVA_00616 0.57 -1.0 54,894 - BACOVA_00616 0.61 +1.0 54,920 + BACOVA_00616 0.65 +0.8 54,927 + BACOVA_00616 0.66 -1.8 54,953 - BACOVA_00616 0.70 +0.5 54,969 - BACOVA_00616 0.73 -0.1 54,970 + BACOVA_00616 0.73 +1.4 54,971 - BACOVA_00616 0.73 +0.6 55,014 - BACOVA_00616 0.80 -0.2 55,014 - BACOVA_00616 0.80 -0.6 55,014 - BACOVA_00616 0.80 -0.0 55,056 + BACOVA_00616 0.87 -1.2 55,130 + -0.0 55,131 - +0.2 55,150 + +0.2 55,150 + +1.4 55,163 + -0.8 55,164 - -0.2 55,164 - -0.0 55,169 + -0.5 55,170 - -0.5 55,208 + -2.0 55,209 - -1.2 55,209 - -0.3 55,211 - +1.0 55,215 + +0.2 55,215 + -0.7 55,306 + BACOVA_00617 0.22 -2.8 55,339 - BACOVA_00617 0.31 -0.5 55,343 + BACOVA_00617 0.32 +0.8 55,343 + BACOVA_00617 0.32 -0.3 55,344 - BACOVA_00617 0.32 +1.0 55,344 - BACOVA_00617 0.32 +0.7 55,368 - BACOVA_00617 0.38 -0.0 55,370 + BACOVA_00617 0.38 +2.0 55,370 + BACOVA_00617 0.38 +0.6 55,371 - BACOVA_00617 0.39 -1.0 55,420 + BACOVA_00617 0.51 +2.5 55,421 - BACOVA_00617 0.51 -1.0 55,422 + BACOVA_00617 0.51 -0.9 55,423 - BACOVA_00617 0.51 +1.0 55,426 + BACOVA_00617 0.52 -1.0 55,470 + BACOVA_00617 0.63 -0.0 55,473 + BACOVA_00617 0.64 -0.2 55,473 + BACOVA_00617 0.64 -0.5 55,474 - BACOVA_00617 0.64 -0.2 55,474 - BACOVA_00617 0.64 +0.4 55,474 - BACOVA_00617 0.64 +0.0 55,480 - BACOVA_00617 0.66 -0.0 55,487 - BACOVA_00617 0.67 +0.5 55,544 - BACOVA_00617 0.82 -0.5 55,555 - BACOVA_00617 0.84 +0.2 55,618 + +0.1 55,629 + -0.1 55,629 + +1.1 55,642 + +2.0 55,677 + +0.2 55,690 + -0.0 55,724 + -0.3 55,750 - -0.2 55,803 + +0.3 55,803 + -0.5 55,804 - -0.3 55,804 - +2.2 55,816 + +1.2 55,816 + +0.5 55,900 - BACOVA_00618 0.16 +0.0 55,906 + BACOVA_00618 0.17 -0.7 55,907 - BACOVA_00618 0.17 -0.3 55,921 + BACOVA_00618 0.18 +2.0 55,994 + BACOVA_00618 0.24 -0.6 56,005 + BACOVA_00618 0.25 -1.7 56,006 - BACOVA_00618 0.25 -1.7 56,024 + BACOVA_00618 0.27 +0.7 56,087 - BACOVA_00618 0.32 -0.8 56,196 - BACOVA_00618 0.41 -1.6 56,253 + BACOVA_00618 0.46 +1.0 56,253 + BACOVA_00618 0.46 +1.5 56,299 + BACOVA_00618 0.50 +1.4 56,299 + BACOVA_00618 0.50 -2.5 56,303 + BACOVA_00618 0.50 +0.4 56,304 - BACOVA_00618 0.50 -0.6 56,306 + BACOVA_00618 0.50 -0.2 56,306 + BACOVA_00618 0.50 -1.4 56,306 + BACOVA_00618 0.50 +2.4 56,306 + BACOVA_00618 0.50 -1.0 56,306 + BACOVA_00618 0.50 +0.2 56,307 - BACOVA_00618 0.50 +1.3 56,354 + BACOVA_00618 0.54 +0.2 56,377 - BACOVA_00618 0.56 -1.5 56,396 + BACOVA_00618 0.58 -0.8 56,396 + BACOVA_00618 0.58 +1.8 56,437 + BACOVA_00618 0.61 -3.0 56,458 - BACOVA_00618 0.63 -1.6 56,458 - BACOVA_00618 0.63 -0.8 56,458 - BACOVA_00618 0.63 -1.4 56,468 + BACOVA_00618 0.64 -1.0 56,544 + BACOVA_00618 0.70 -0.1 56,544 + BACOVA_00618 0.70 -0.0 56,563 + BACOVA_00618 0.72 -0.7 56,569 - BACOVA_00618 0.72 -1.4 56,600 + BACOVA_00618 0.75 -1.2 56,601 - BACOVA_00618 0.75 +0.7 56,609 - BACOVA_00618 0.76 +0.3 56,630 - BACOVA_00618 0.77 -0.3 56,630 - BACOVA_00618 0.77 -0.4 56,633 - BACOVA_00618 0.78 +0.1 56,655 - BACOVA_00618 0.80 -0.4 56,704 + BACOVA_00618 0.84 -0.9 56,704 + BACOVA_00618 0.84 -1.6 56,734 - BACOVA_00618 0.86 -0.0 56,734 - BACOVA_00618 0.86 -0.7 56,743 - BACOVA_00618 0.87 +1.0 56,796 + -0.3 56,796 + +1.0 56,797 - -1.6 56,800 + -1.5 56,801 - -1.8 56,805 - -0.9 56,818 + -1.7 56,831 + +0.1 56,832 - -1.4 56,832 - +1.7 56,856 - -3.1 56,856 - +0.3 56,864 - +2.2 56,864 - +1.0 56,899 + +1.2 56,900 - -0.9 56,903 + -0.9 56,921 + +0.4 56,922 - -1.2 56,922 - -3.0 56,936 + -0.8 56,952 + +1.0 56,952 + +1.1 56,953 - -0.5 56,965 - -0.3 56,965 - +0.7 56,975 + -2.5 56,976 - -0.4 56,976 - +0.6 56,977 + -0.3 56,979 + -0.5 56,979 + +1.5 56,980 - +0.6 56,980 - -1.4 56,980 - +1.0 56,980 - +0.6 56,989 + -2.2 57,171 + BACOVA_00619 0.39 +0.0 57,220 + BACOVA_00619 0.48 -0.4 57,221 - BACOVA_00619 0.49 +0.6 57,221 - BACOVA_00619 0.49 -0.8 57,221 - BACOVA_00619 0.49 -0.6 57,223 - BACOVA_00619 0.49 -1.4 57,258 - BACOVA_00619 0.55 -1.4 57,342 - BACOVA_00619 0.71 -0.0 57,399 - BACOVA_00619 0.81 -0.5 57,500 - +1.3 57,730 + BACOVA_00620 0.14 -0.6 57,731 - BACOVA_00620 0.14 -1.5 57,731 - BACOVA_00620 0.14 -0.2 57,791 + BACOVA_00620 0.19 +0.3 57,791 + BACOVA_00620 0.19 -1.8 57,794 - BACOVA_00620 0.20 -1.6 57,818 + BACOVA_00620 0.22 -0.8 57,838 + BACOVA_00620 0.23 -0.0 57,838 + BACOVA_00620 0.23 +1.8 57,839 - BACOVA_00620 0.23 -0.8 57,842 + BACOVA_00620 0.24 +0.3 57,842 + BACOVA_00620 0.24 +0.8 57,843 - BACOVA_00620 0.24 +0.5 57,869 - BACOVA_00620 0.26 -0.6 57,869 - BACOVA_00620 0.26 -1.1 57,871 + BACOVA_00620 0.26 +0.8 57,872 - BACOVA_00620 0.26 +1.5 57,875 - BACOVA_00620 0.27 +2.0 57,875 - BACOVA_00620 0.27 +0.2 57,875 - BACOVA_00620 0.27 +0.4 57,875 - BACOVA_00620 0.27 -2.8 57,875 - BACOVA_00620 0.27 -1.0
Or see this region's nucleotide sequence