Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05610 and BACOVA_05611 are separated by 336 nucleotides BACOVA_05611 and BACOVA_05612 are separated by 283 nucleotides BACOVA_05612 and BACOVA_05613 overlap by 4 nucleotides
BACOVA_05610: BACOVA_05610 - phosphate-selective porin O and P, at 1,128,009 to 1,129,154
_05610
BACOVA_05611: BACOVA_05611 - glycosyl hydrolase family 49, at 1,129,491 to 1,130,903
_05611
BACOVA_05612: BACOVA_05612 - hypothetical protein, at 1,131,187 to 1,131,354
_05612
BACOVA_05613: BACOVA_05613 - hypothetical protein, at 1,131,351 to 1,133,264
_05613
Position (kb)
1129
1130
1131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1128.553 kb on - strand, within BACOVA_05610 at 1128.587 kb on + strand, within BACOVA_05610 at 1128.589 kb on + strand, within BACOVA_05610 at 1128.595 kb on + strand, within BACOVA_05610 at 1128.612 kb on - strand, within BACOVA_05610 at 1128.651 kb on - strand, within BACOVA_05610 at 1128.661 kb on - strand, within BACOVA_05610 at 1128.696 kb on - strand, within BACOVA_05610 at 1128.696 kb on - strand, within BACOVA_05610 at 1128.715 kb on + strand, within BACOVA_05610 at 1128.771 kb on - strand, within BACOVA_05610 at 1128.792 kb on + strand, within BACOVA_05610 at 1128.808 kb on + strand, within BACOVA_05610 at 1128.834 kb on + strand, within BACOVA_05610 at 1128.835 kb on - strand, within BACOVA_05610 at 1128.837 kb on - strand, within BACOVA_05610 at 1128.852 kb on + strand, within BACOVA_05610 at 1128.853 kb on - strand, within BACOVA_05610 at 1128.853 kb on - strand, within BACOVA_05610 at 1128.853 kb on - strand, within BACOVA_05610 at 1128.853 kb on - strand, within BACOVA_05610 at 1128.872 kb on - strand, within BACOVA_05610 at 1128.888 kb on + strand, within BACOVA_05610 at 1128.888 kb on + strand, within BACOVA_05610 at 1128.889 kb on - strand, within BACOVA_05610 at 1128.889 kb on - strand, within BACOVA_05610 at 1128.892 kb on + strand, within BACOVA_05610 at 1128.908 kb on - strand, within BACOVA_05610 at 1128.946 kb on + strand, within BACOVA_05610 at 1128.946 kb on + strand, within BACOVA_05610 at 1128.947 kb on - strand, within BACOVA_05610 at 1128.989 kb on - strand, within BACOVA_05610 at 1129.029 kb on + strand, within BACOVA_05610 at 1129.030 kb on - strand, within BACOVA_05610 at 1129.033 kb on - strand, within BACOVA_05610 at 1129.033 kb on - strand, within BACOVA_05610 at 1129.034 kb on + strand, within BACOVA_05610 at 1129.035 kb on - strand, within BACOVA_05610 at 1129.040 kb on + strand at 1129.040 kb on + strand at 1129.065 kb on + strand at 1129.065 kb on + strand at 1129.066 kb on - strand at 1129.066 kb on - strand at 1129.066 kb on - strand at 1129.071 kb on + strand at 1129.071 kb on + strand at 1129.091 kb on + strand at 1129.127 kb on - strand at 1129.147 kb on + strand at 1129.148 kb on - strand at 1129.148 kb on - strand at 1129.148 kb on - strand at 1129.183 kb on - strand at 1129.183 kb on - strand at 1129.183 kb on - strand at 1129.205 kb on - strand at 1129.205 kb on - strand at 1129.263 kb on + strand at 1129.275 kb on + strand at 1129.280 kb on - strand at 1129.321 kb on + strand at 1129.321 kb on + strand at 1129.322 kb on - strand at 1129.325 kb on + strand at 1129.326 kb on - strand at 1129.349 kb on - strand at 1129.356 kb on - strand at 1129.379 kb on - strand at 1129.432 kb on - strand at 1129.434 kb on - strand at 1129.474 kb on + strand at 1129.479 kb on + strand at 1129.497 kb on - strand at 1129.499 kb on - strand at 1129.501 kb on + strand at 1129.501 kb on + strand at 1129.540 kb on + strand at 1129.541 kb on - strand at 1129.541 kb on - strand at 1129.544 kb on + strand at 1129.544 kb on + strand at 1129.545 kb on - strand at 1129.545 kb on - strand at 1129.616 kb on + strand at 1129.616 kb on + strand at 1129.616 kb on + strand at 1129.627 kb on - strand at 1129.629 kb on - strand at 1129.640 kb on - strand, within BACOVA_05611 at 1129.670 kb on - strand, within BACOVA_05611 at 1129.690 kb on + strand, within BACOVA_05611 at 1129.695 kb on - strand, within BACOVA_05611 at 1129.705 kb on + strand, within BACOVA_05611 at 1129.735 kb on + strand, within BACOVA_05611 at 1129.747 kb on + strand, within BACOVA_05611 at 1129.810 kb on + strand, within BACOVA_05611 at 1129.810 kb on + strand, within BACOVA_05611 at 1129.811 kb on - strand, within BACOVA_05611 at 1129.814 kb on + strand, within BACOVA_05611 at 1129.814 kb on + strand, within BACOVA_05611 at 1129.815 kb on - strand, within BACOVA_05611 at 1129.815 kb on - strand, within BACOVA_05611 at 1129.815 kb on - strand, within BACOVA_05611 at 1129.815 kb on - strand, within BACOVA_05611 at 1129.816 kb on + strand, within BACOVA_05611 at 1129.817 kb on - strand, within BACOVA_05611 at 1129.817 kb on - strand, within BACOVA_05611 at 1129.817 kb on - strand, within BACOVA_05611 at 1129.817 kb on - strand, within BACOVA_05611 at 1129.824 kb on - strand, within BACOVA_05611 at 1129.923 kb on - strand, within BACOVA_05611 at 1129.945 kb on - strand, within BACOVA_05611 at 1129.966 kb on + strand, within BACOVA_05611 at 1129.967 kb on - strand, within BACOVA_05611 at 1129.972 kb on - strand, within BACOVA_05611 at 1130.020 kb on + strand, within BACOVA_05611 at 1130.020 kb on + strand, within BACOVA_05611 at 1130.021 kb on - strand, within BACOVA_05611 at 1130.046 kb on + strand, within BACOVA_05611 at 1130.068 kb on + strand, within BACOVA_05611 at 1130.069 kb on - strand, within BACOVA_05611 at 1130.171 kb on + strand, within BACOVA_05611 at 1130.190 kb on - strand, within BACOVA_05611 at 1130.190 kb on - strand, within BACOVA_05611 at 1130.196 kb on - strand, within BACOVA_05611 at 1130.197 kb on + strand, within BACOVA_05611 at 1130.197 kb on + strand, within BACOVA_05611 at 1130.198 kb on - strand, within BACOVA_05611 at 1130.213 kb on + strand, within BACOVA_05611 at 1130.213 kb on + strand, within BACOVA_05611 at 1130.218 kb on + strand, within BACOVA_05611 at 1130.274 kb on - strand, within BACOVA_05611 at 1130.293 kb on + strand, within BACOVA_05611 at 1130.294 kb on - strand, within BACOVA_05611 at 1130.323 kb on + strand, within BACOVA_05611 at 1130.357 kb on + strand, within BACOVA_05611 at 1130.358 kb on - strand, within BACOVA_05611 at 1130.368 kb on - strand, within BACOVA_05611 at 1130.385 kb on + strand, within BACOVA_05611 at 1130.508 kb on - strand, within BACOVA_05611 at 1130.508 kb on - strand, within BACOVA_05611 at 1130.509 kb on + strand, within BACOVA_05611 at 1130.528 kb on + strand, within BACOVA_05611 at 1130.602 kb on + strand, within BACOVA_05611 at 1130.666 kb on + strand, within BACOVA_05611 at 1130.667 kb on - strand, within BACOVA_05611 at 1130.667 kb on - strand, within BACOVA_05611 at 1130.667 kb on - strand, within BACOVA_05611 at 1130.689 kb on - strand, within BACOVA_05611 at 1130.807 kb on + strand at 1130.838 kb on - strand at 1130.853 kb on - strand at 1130.854 kb on + strand at 1130.877 kb on + strand at 1130.906 kb on + strand at 1130.914 kb on + strand at 1130.945 kb on + strand at 1130.971 kb on - strand at 1130.988 kb on - strand at 1130.999 kb on - strand at 1131.004 kb on - strand at 1131.031 kb on - strand at 1131.043 kb on + strand at 1131.043 kb on + strand at 1131.067 kb on - strand at 1131.087 kb on + strand at 1131.088 kb on - strand at 1131.099 kb on - strand at 1131.102 kb on + strand at 1131.103 kb on - strand at 1131.120 kb on + strand at 1131.150 kb on - strand at 1131.152 kb on + strand at 1131.153 kb on - strand at 1131.158 kb on - strand at 1131.158 kb on - strand at 1131.165 kb on - strand at 1131.167 kb on + strand at 1131.168 kb on - strand at 1131.168 kb on - strand at 1131.201 kb on - strand at 1131.270 kb on - strand, within BACOVA_05612 at 1131.270 kb on - strand, within BACOVA_05612 at 1131.302 kb on + strand, within BACOVA_05612 at 1131.305 kb on + strand, within BACOVA_05612 at 1131.306 kb on - strand, within BACOVA_05612 at 1131.313 kb on - strand, within BACOVA_05612 at 1131.333 kb on + strand, within BACOVA_05612 at 1131.386 kb on - strand at 1131.429 kb on - strand at 1131.434 kb on + strand at 1131.435 kb on - strand at 1131.453 kb on + strand at 1131.454 kb on - strand at 1131.454 kb on - strand at 1131.485 kb on + strand at 1131.486 kb on - strand at 1131.510 kb on + strand at 1131.514 kb on - strand at 1131.611 kb on + strand, within BACOVA_05613 at 1131.612 kb on - strand, within BACOVA_05613 at 1131.646 kb on + strand, within BACOVA_05613 at 1131.646 kb on + strand, within BACOVA_05613 at 1131.647 kb on - strand, within BACOVA_05613 at 1131.714 kb on - strand, within BACOVA_05613 at 1131.721 kb on - strand, within BACOVA_05613 at 1131.724 kb on - strand, within BACOVA_05613 at 1131.726 kb on - strand, within BACOVA_05613 at 1131.737 kb on + strand, within BACOVA_05613 at 1131.738 kb on - strand, within BACOVA_05613 at 1131.758 kb on - strand, within BACOVA_05613 at 1131.781 kb on + strand, within BACOVA_05613 at 1131.870 kb on + strand, within BACOVA_05613 at 1131.900 kb on + strand, within BACOVA_05613
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 1,128,553 - BACOVA_05610 0.47 +0.6 1,128,587 + BACOVA_05610 0.50 -0.4 1,128,589 + BACOVA_05610 0.51 +0.5 1,128,595 + BACOVA_05610 0.51 +0.4 1,128,612 - BACOVA_05610 0.53 -0.1 1,128,651 - BACOVA_05610 0.56 +0.4 1,128,661 - BACOVA_05610 0.57 -0.6 1,128,696 - BACOVA_05610 0.60 -0.1 1,128,696 - BACOVA_05610 0.60 +0.2 1,128,715 + BACOVA_05610 0.62 +0.9 1,128,771 - BACOVA_05610 0.66 +0.6 1,128,792 + BACOVA_05610 0.68 +0.2 1,128,808 + BACOVA_05610 0.70 +1.1 1,128,834 + BACOVA_05610 0.72 +2.5 1,128,835 - BACOVA_05610 0.72 +0.2 1,128,837 - BACOVA_05610 0.72 -0.1 1,128,852 + BACOVA_05610 0.74 +0.7 1,128,853 - BACOVA_05610 0.74 -1.1 1,128,853 - BACOVA_05610 0.74 -0.4 1,128,853 - BACOVA_05610 0.74 -0.4 1,128,853 - BACOVA_05610 0.74 +1.2 1,128,872 - BACOVA_05610 0.75 -0.0 1,128,888 + BACOVA_05610 0.77 +0.5 1,128,888 + BACOVA_05610 0.77 -1.3 1,128,889 - BACOVA_05610 0.77 +1.1 1,128,889 - BACOVA_05610 0.77 +0.4 1,128,892 + BACOVA_05610 0.77 +0.4 1,128,908 - BACOVA_05610 0.78 +0.0 1,128,946 + BACOVA_05610 0.82 -0.1 1,128,946 + BACOVA_05610 0.82 -0.5 1,128,947 - BACOVA_05610 0.82 +0.4 1,128,989 - BACOVA_05610 0.86 +0.6 1,129,029 + BACOVA_05610 0.89 +1.2 1,129,030 - BACOVA_05610 0.89 +0.4 1,129,033 - BACOVA_05610 0.89 -0.1 1,129,033 - BACOVA_05610 0.89 +0.8 1,129,034 + BACOVA_05610 0.89 +1.7 1,129,035 - BACOVA_05610 0.90 -0.4 1,129,040 + -0.9 1,129,040 + +1.3 1,129,065 + +0.0 1,129,065 + -0.1 1,129,066 - -1.2 1,129,066 - +0.6 1,129,066 - +0.9 1,129,071 + -0.3 1,129,071 + +1.2 1,129,091 + -1.4 1,129,127 - +1.9 1,129,147 + +0.6 1,129,148 - +0.2 1,129,148 - +0.6 1,129,148 - +0.6 1,129,183 - -0.3 1,129,183 - -0.6 1,129,183 - -0.0 1,129,205 - -0.4 1,129,205 - -0.4 1,129,263 + -0.2 1,129,275 + -1.2 1,129,280 - -0.6 1,129,321 + +0.3 1,129,321 + -2.1 1,129,322 - +1.4 1,129,325 + -1.5 1,129,326 - +0.5 1,129,349 - -0.4 1,129,356 - +0.3 1,129,379 - -1.1 1,129,432 - -0.3 1,129,434 - +1.5 1,129,474 + +2.9 1,129,479 + -1.0 1,129,497 - +1.8 1,129,499 - +0.7 1,129,501 + -1.3 1,129,501 + -0.1 1,129,540 + -1.2 1,129,541 - +0.6 1,129,541 - +1.1 1,129,544 + -1.5 1,129,544 + -0.2 1,129,545 - -0.6 1,129,545 - -0.4 1,129,616 + -0.3 1,129,616 + -1.4 1,129,616 + +2.1 1,129,627 - +0.2 1,129,629 - +0.8 1,129,640 - BACOVA_05611 0.11 +0.4 1,129,670 - BACOVA_05611 0.13 -0.1 1,129,690 + BACOVA_05611 0.14 +0.7 1,129,695 - BACOVA_05611 0.14 -0.6 1,129,705 + BACOVA_05611 0.15 +0.9 1,129,735 + BACOVA_05611 0.17 +0.3 1,129,747 + BACOVA_05611 0.18 +0.4 1,129,810 + BACOVA_05611 0.23 +0.3 1,129,810 + BACOVA_05611 0.23 +0.2 1,129,811 - BACOVA_05611 0.23 +0.3 1,129,814 + BACOVA_05611 0.23 +0.4 1,129,814 + BACOVA_05611 0.23 +0.4 1,129,815 - BACOVA_05611 0.23 -1.0 1,129,815 - BACOVA_05611 0.23 -0.7 1,129,815 - BACOVA_05611 0.23 +1.3 1,129,815 - BACOVA_05611 0.23 -0.4 1,129,816 + BACOVA_05611 0.23 +0.6 1,129,817 - BACOVA_05611 0.23 +1.7 1,129,817 - BACOVA_05611 0.23 -1.0 1,129,817 - BACOVA_05611 0.23 +0.4 1,129,817 - BACOVA_05611 0.23 -0.9 1,129,824 - BACOVA_05611 0.24 -0.6 1,129,923 - BACOVA_05611 0.31 -0.1 1,129,945 - BACOVA_05611 0.32 +0.0 1,129,966 + BACOVA_05611 0.34 +0.5 1,129,967 - BACOVA_05611 0.34 -0.1 1,129,972 - BACOVA_05611 0.34 -0.1 1,130,020 + BACOVA_05611 0.37 +0.5 1,130,020 + BACOVA_05611 0.37 +1.5 1,130,021 - BACOVA_05611 0.38 +1.4 1,130,046 + BACOVA_05611 0.39 +1.1 1,130,068 + BACOVA_05611 0.41 -0.6 1,130,069 - BACOVA_05611 0.41 +0.8 1,130,171 + BACOVA_05611 0.48 +0.1 1,130,190 - BACOVA_05611 0.49 +0.5 1,130,190 - BACOVA_05611 0.49 +0.5 1,130,196 - BACOVA_05611 0.50 -0.1 1,130,197 + BACOVA_05611 0.50 -1.1 1,130,197 + BACOVA_05611 0.50 +0.9 1,130,198 - BACOVA_05611 0.50 -0.6 1,130,213 + BACOVA_05611 0.51 -1.5 1,130,213 + BACOVA_05611 0.51 +0.2 1,130,218 + BACOVA_05611 0.51 +0.9 1,130,274 - BACOVA_05611 0.55 +0.4 1,130,293 + BACOVA_05611 0.57 -0.5 1,130,294 - BACOVA_05611 0.57 +0.7 1,130,323 + BACOVA_05611 0.59 -3.1 1,130,357 + BACOVA_05611 0.61 +1.5 1,130,358 - BACOVA_05611 0.61 -0.2 1,130,368 - BACOVA_05611 0.62 -0.2 1,130,385 + BACOVA_05611 0.63 +0.7 1,130,508 - BACOVA_05611 0.72 -0.3 1,130,508 - BACOVA_05611 0.72 -0.8 1,130,509 + BACOVA_05611 0.72 +0.5 1,130,528 + BACOVA_05611 0.73 +0.5 1,130,602 + BACOVA_05611 0.79 -0.1 1,130,666 + BACOVA_05611 0.83 -1.4 1,130,667 - BACOVA_05611 0.83 +1.9 1,130,667 - BACOVA_05611 0.83 -0.1 1,130,667 - BACOVA_05611 0.83 +0.5 1,130,689 - BACOVA_05611 0.85 -0.5 1,130,807 + -1.3 1,130,838 - -0.2 1,130,853 - +0.8 1,130,854 + -0.6 1,130,877 + -0.1 1,130,906 + -1.1 1,130,914 + +0.4 1,130,945 + -0.9 1,130,971 - +0.4 1,130,988 - +0.4 1,130,999 - -0.7 1,131,004 - -1.0 1,131,031 - +0.7 1,131,043 + +0.2 1,131,043 + +0.4 1,131,067 - +1.4 1,131,087 + +0.3 1,131,088 - +0.5 1,131,099 - -1.8 1,131,102 + -0.3 1,131,103 - -0.7 1,131,120 + +0.7 1,131,150 - -0.8 1,131,152 + -0.6 1,131,153 - -0.1 1,131,158 - +0.8 1,131,158 - +0.1 1,131,165 - +0.9 1,131,167 + +1.2 1,131,168 - +0.7 1,131,168 - -1.6 1,131,201 - +0.1 1,131,270 - BACOVA_05612 0.49 +0.1 1,131,270 - BACOVA_05612 0.49 +0.7 1,131,302 + BACOVA_05612 0.68 -0.1 1,131,305 + BACOVA_05612 0.70 -0.8 1,131,306 - BACOVA_05612 0.71 +0.1 1,131,313 - BACOVA_05612 0.75 -1.4 1,131,333 + BACOVA_05612 0.87 -0.5 1,131,386 - +1.4 1,131,429 - +0.7 1,131,434 + +0.3 1,131,435 - +0.9 1,131,453 + -0.2 1,131,454 - -1.2 1,131,454 - -1.1 1,131,485 + +0.1 1,131,486 - +0.9 1,131,510 + -0.6 1,131,514 - +1.2 1,131,611 + BACOVA_05613 0.14 -0.1 1,131,612 - BACOVA_05613 0.14 -0.4 1,131,646 + BACOVA_05613 0.15 -0.4 1,131,646 + BACOVA_05613 0.15 -1.2 1,131,647 - BACOVA_05613 0.15 -0.4 1,131,714 - BACOVA_05613 0.19 +0.2 1,131,721 - BACOVA_05613 0.19 -0.7 1,131,724 - BACOVA_05613 0.19 +0.6 1,131,726 - BACOVA_05613 0.20 +0.1 1,131,737 + BACOVA_05613 0.20 -1.1 1,131,738 - BACOVA_05613 0.20 +1.4 1,131,758 - BACOVA_05613 0.21 +0.7 1,131,781 + BACOVA_05613 0.22 +0.3 1,131,870 + BACOVA_05613 0.27 +0.1 1,131,900 + BACOVA_05613 0.29 -0.5
Or see this region's nucleotide sequence