Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04192 and BACOVA_04193 are separated by 218 nucleotides BACOVA_04193 and BACOVA_04194 are separated by 303 nucleotides BACOVA_04194 and BACOVA_04195 overlap by 4 nucleotides BACOVA_04195 and BACOVA_04196 are separated by 12 nucleotides
BACOVA_04192: BACOVA_04192 - YbaK/proline--tRNA ligase associated domain protein, at 69,228 to 69,791
_04192
BACOVA_04193: BACOVA_04193 - hypothetical protein, at 70,010 to 70,114
_04193
BACOVA_04194: BACOVA_04194 - efflux ABC transporter, permease protein, at 70,418 to 72,838
_04194
BACOVA_04195: BACOVA_04195 - ABC transporter, ATP-binding protein, at 72,835 to 73,551
_04195
BACOVA_04196: BACOVA_04196 - efflux transporter, RND family, MFP subunit, at 73,564 to 74,811
_04196
Position (kb) 70
71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.422 kb on + strand, within BACOVA_04192 at 69.423 kb on - strand, within BACOVA_04192 at 69.423 kb on - strand, within BACOVA_04192 at 69.452 kb on + strand, within BACOVA_04192 at 69.453 kb on - strand, within BACOVA_04192 at 69.478 kb on + strand, within BACOVA_04192 at 69.526 kb on + strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.530 kb on + strand, within BACOVA_04192 at 69.531 kb on - strand, within BACOVA_04192 at 69.582 kb on - strand, within BACOVA_04192 at 69.607 kb on + strand, within BACOVA_04192 at 69.608 kb on - strand, within BACOVA_04192 at 69.614 kb on + strand, within BACOVA_04192 at 69.614 kb on + strand, within BACOVA_04192 at 69.615 kb on - strand, within BACOVA_04192 at 69.623 kb on + strand, within BACOVA_04192 at 69.637 kb on + strand, within BACOVA_04192 at 69.638 kb on - strand, within BACOVA_04192 at 69.654 kb on - strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.677 kb on + strand, within BACOVA_04192 at 69.678 kb on - strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.680 kb on - strand, within BACOVA_04192 at 69.697 kb on + strand, within BACOVA_04192 at 69.698 kb on - strand, within BACOVA_04192 at 69.698 kb on - strand, within BACOVA_04192 at 69.743 kb on - strand at 69.743 kb on - strand at 69.746 kb on - strand at 69.746 kb on - strand at 69.746 kb on - strand at 69.789 kb on + strand at 69.836 kb on + strand at 69.837 kb on - strand at 69.858 kb on + strand at 69.859 kb on - strand at 69.863 kb on + strand at 69.863 kb on + strand at 69.863 kb on + strand at 69.864 kb on - strand at 70.002 kb on + strand at 70.012 kb on - strand at 70.047 kb on + strand, within BACOVA_04193 at 70.116 kb on + strand at 70.116 kb on + strand at 70.116 kb on + strand at 70.131 kb on - strand at 70.199 kb on - strand at 70.210 kb on - strand at 70.214 kb on - strand at 70.293 kb on - strand at 70.293 kb on - strand at 70.317 kb on - strand at 70.321 kb on + strand at 70.326 kb on + strand at 70.327 kb on - strand at 70.329 kb on - strand at 70.341 kb on + strand at 70.341 kb on + strand at 70.406 kb on + strand at 70.455 kb on - strand at 70.511 kb on + strand at 70.517 kb on + strand at 70.517 kb on + strand at 70.517 kb on + strand at 70.517 kb on + strand at 70.521 kb on - strand at 70.521 kb on - strand at 70.523 kb on - strand at 70.523 kb on - strand at 70.565 kb on + strand at 70.579 kb on + strand at 70.579 kb on + strand at 70.604 kb on + strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.606 kb on + strand at 70.606 kb on + strand at 70.688 kb on - strand, within BACOVA_04194 at 70.691 kb on + strand, within BACOVA_04194 at 70.692 kb on - strand, within BACOVA_04194 at 70.692 kb on - strand, within BACOVA_04194 at 70.733 kb on + strand, within BACOVA_04194 at 70.759 kb on + strand, within BACOVA_04194 at 70.946 kb on - strand, within BACOVA_04194 at 70.947 kb on + strand, within BACOVA_04194 at 70.947 kb on + strand, within BACOVA_04194 at 70.947 kb on + strand, within BACOVA_04194 at 70.948 kb on - strand, within BACOVA_04194 at 70.993 kb on + strand, within BACOVA_04194 at 70.993 kb on + strand, within BACOVA_04194 at 71.000 kb on - strand, within BACOVA_04194 at 71.000 kb on - strand, within BACOVA_04194 at 71.001 kb on + strand, within BACOVA_04194 at 71.068 kb on + strand, within BACOVA_04194 at 71.069 kb on - strand, within BACOVA_04194 at 71.069 kb on - strand, within BACOVA_04194 at 71.081 kb on + strand, within BACOVA_04194 at 71.082 kb on - strand, within BACOVA_04194 at 71.125 kb on + strand, within BACOVA_04194 at 71.125 kb on + strand, within BACOVA_04194 at 71.126 kb on - strand, within BACOVA_04194 at 71.143 kb on + strand, within BACOVA_04194 at 71.144 kb on - strand, within BACOVA_04194 at 71.144 kb on - strand, within BACOVA_04194 at 71.172 kb on + strand, within BACOVA_04194 at 71.214 kb on + strand, within BACOVA_04194 at 71.215 kb on - strand, within BACOVA_04194 at 71.341 kb on + strand, within BACOVA_04194 at 71.414 kb on - strand, within BACOVA_04194 at 71.506 kb on + strand, within BACOVA_04194 at 71.533 kb on + strand, within BACOVA_04194 at 71.533 kb on + strand, within BACOVA_04194 at 71.533 kb on + strand, within BACOVA_04194 at 71.533 kb on + strand, within BACOVA_04194 at 71.582 kb on - strand, within BACOVA_04194 at 71.644 kb on - strand, within BACOVA_04194 at 71.660 kb on + strand, within BACOVA_04194 at 71.701 kb on - strand, within BACOVA_04194 at 71.726 kb on - strand, within BACOVA_04194 at 71.732 kb on - strand, within BACOVA_04194 at 71.732 kb on - strand, within BACOVA_04194 at 71.738 kb on + strand, within BACOVA_04194 at 71.771 kb on + strand, within BACOVA_04194 at 71.789 kb on + strand, within BACOVA_04194 at 71.790 kb on - strand, within BACOVA_04194 at 71.790 kb on - strand, within BACOVA_04194 at 71.865 kb on - strand, within BACOVA_04194 at 71.910 kb on - strand, within BACOVA_04194 at 71.925 kb on + strand, within BACOVA_04194 at 71.929 kb on + strand, within BACOVA_04194 at 71.951 kb on - strand, within BACOVA_04194 at 71.951 kb on - strand, within BACOVA_04194 at 72.013 kb on - strand, within BACOVA_04194 at 72.018 kb on - strand, within BACOVA_04194 at 72.018 kb on - strand, within BACOVA_04194 at 72.035 kb on + strand, within BACOVA_04194 at 72.035 kb on + strand, within BACOVA_04194 at 72.035 kb on + strand, within BACOVA_04194 at 72.036 kb on - strand, within BACOVA_04194 at 72.036 kb on - strand, within BACOVA_04194 at 72.036 kb on - strand, within BACOVA_04194 at 72.053 kb on + strand, within BACOVA_04194 at 72.168 kb on + strand, within BACOVA_04194 at 72.169 kb on - strand, within BACOVA_04194 at 72.173 kb on - strand, within BACOVA_04194 at 72.173 kb on - strand, within BACOVA_04194 at 72.174 kb on + strand, within BACOVA_04194 at 72.175 kb on - strand, within BACOVA_04194 at 72.187 kb on + strand, within BACOVA_04194 at 72.188 kb on - strand, within BACOVA_04194 at 72.188 kb on - strand, within BACOVA_04194 at 72.188 kb on - strand, within BACOVA_04194 at 72.189 kb on + strand, within BACOVA_04194 at 72.205 kb on + strand, within BACOVA_04194 at 72.206 kb on - strand, within BACOVA_04194 at 72.208 kb on - strand, within BACOVA_04194 at 72.226 kb on - strand, within BACOVA_04194 at 72.304 kb on + strand, within BACOVA_04194 at 72.305 kb on - strand, within BACOVA_04194 at 72.310 kb on - strand, within BACOVA_04194 at 72.310 kb on - strand, within BACOVA_04194 at 72.374 kb on - strand, within BACOVA_04194 at 72.386 kb on + strand, within BACOVA_04194 at 72.475 kb on - strand, within BACOVA_04194 at 72.479 kb on + strand, within BACOVA_04194 at 72.479 kb on + strand, within BACOVA_04194 at 72.480 kb on - strand, within BACOVA_04194 at 72.510 kb on + strand, within BACOVA_04194 at 72.555 kb on + strand, within BACOVA_04194 at 72.555 kb on + strand, within BACOVA_04194 at 72.555 kb on + strand, within BACOVA_04194 at 72.556 kb on - strand, within BACOVA_04194 at 72.667 kb on - strand at 72.670 kb on + strand at 72.671 kb on - strand at 72.671 kb on - strand at 72.671 kb on - strand at 72.679 kb on - strand at 72.720 kb on + strand at 72.720 kb on + strand at 72.721 kb on - strand at 72.721 kb on - strand at 72.725 kb on + strand at 72.726 kb on - strand at 72.769 kb on + strand at 72.913 kb on + strand, within BACOVA_04195 at 72.935 kb on + strand, within BACOVA_04195 at 72.935 kb on + strand, within BACOVA_04195 at 72.936 kb on - strand, within BACOVA_04195 at 72.967 kb on - strand, within BACOVA_04195 at 73.071 kb on + strand, within BACOVA_04195 at 73.071 kb on + strand, within BACOVA_04195 at 73.071 kb on + strand, within BACOVA_04195 at 73.072 kb on - strand, within BACOVA_04195 at 73.157 kb on - strand, within BACOVA_04195 at 73.182 kb on + strand, within BACOVA_04195 at 73.223 kb on + strand, within BACOVA_04195 at 73.224 kb on - strand, within BACOVA_04195 at 73.291 kb on - strand, within BACOVA_04195 at 73.303 kb on - strand, within BACOVA_04195 at 73.395 kb on + strand, within BACOVA_04195 at 73.405 kb on - strand, within BACOVA_04195 at 73.475 kb on - strand, within BACOVA_04195 at 73.475 kb on - strand, within BACOVA_04195 at 73.475 kb on - strand, within BACOVA_04195 at 73.531 kb on + strand at 73.546 kb on - strand at 73.551 kb on + strand at 73.552 kb on - strand at 73.554 kb on + strand at 73.555 kb on - strand at 73.558 kb on + strand at 73.571 kb on - strand at 73.576 kb on + strand at 73.679 kb on - strand at 73.727 kb on + strand, within BACOVA_04196 at 73.728 kb on - strand, within BACOVA_04196 at 73.728 kb on - strand, within BACOVA_04196 at 73.779 kb on + strand, within BACOVA_04196 at 73.780 kb on - strand, within BACOVA_04196 at 73.810 kb on + strand, within BACOVA_04196 at 73.817 kb on + strand, within BACOVA_04196 at 73.818 kb on - strand, within BACOVA_04196
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 69,422 + BACOVA_04192 0.34 +1.5 69,423 - BACOVA_04192 0.35 +0.1 69,423 - BACOVA_04192 0.35 +0.5 69,452 + BACOVA_04192 0.40 +0.5 69,453 - BACOVA_04192 0.40 -2.5 69,478 + BACOVA_04192 0.44 +0.3 69,526 + BACOVA_04192 0.53 -0.0 69,527 - BACOVA_04192 0.53 -0.4 69,527 - BACOVA_04192 0.53 -0.6 69,527 - BACOVA_04192 0.53 +0.8 69,530 + BACOVA_04192 0.54 -0.0 69,531 - BACOVA_04192 0.54 +1.0 69,582 - BACOVA_04192 0.63 -0.5 69,607 + BACOVA_04192 0.67 +1.0 69,608 - BACOVA_04192 0.67 +0.4 69,614 + BACOVA_04192 0.68 +1.0 69,614 + BACOVA_04192 0.68 -0.7 69,615 - BACOVA_04192 0.69 +0.0 69,623 + BACOVA_04192 0.70 +0.1 69,637 + BACOVA_04192 0.73 +0.3 69,638 - BACOVA_04192 0.73 -2.0 69,654 - BACOVA_04192 0.76 -0.6 69,675 + BACOVA_04192 0.79 -1.0 69,675 + BACOVA_04192 0.79 -2.9 69,675 + BACOVA_04192 0.79 -1.0 69,676 - BACOVA_04192 0.79 -1.4 69,676 - BACOVA_04192 0.79 -0.6 69,676 - BACOVA_04192 0.79 -0.9 69,677 + BACOVA_04192 0.80 -0.3 69,678 - BACOVA_04192 0.80 +1.0 69,679 + BACOVA_04192 0.80 -0.4 69,679 + BACOVA_04192 0.80 -0.5 69,679 + BACOVA_04192 0.80 +1.2 69,679 + BACOVA_04192 0.80 -0.6 69,680 - BACOVA_04192 0.80 +1.4 69,697 + BACOVA_04192 0.83 +0.3 69,698 - BACOVA_04192 0.83 +0.8 69,698 - BACOVA_04192 0.83 +0.5 69,743 - -0.0 69,743 - -0.1 69,746 - -0.1 69,746 - -0.6 69,746 - +0.3 69,789 + +0.5 69,836 + -1.3 69,837 - +0.3 69,858 + +0.4 69,859 - +0.1 69,863 + +0.8 69,863 + -0.4 69,863 + +0.2 69,864 - -0.5 70,002 + +0.6 70,012 - -0.4 70,047 + BACOVA_04193 0.35 -1.5 70,116 + +0.2 70,116 + +0.0 70,116 + +0.6 70,131 - -0.0 70,199 - +0.2 70,210 - -0.0 70,214 - -0.5 70,293 - +0.8 70,293 - +1.0 70,317 - +1.0 70,321 + -1.9 70,326 + -0.5 70,327 - -2.0 70,329 - -2.0 70,341 + +0.2 70,341 + +1.0 70,406 + -0.3 70,455 - +1.0 70,511 + +0.7 70,517 + +1.0 70,517 + +0.7 70,517 + +0.1 70,517 + +0.0 70,521 - -0.4 70,521 - +1.3 70,523 - +0.3 70,523 - -0.8 70,565 + +0.4 70,579 + -1.0 70,579 + +0.6 70,604 + +1.1 70,605 - -0.7 70,605 - +0.8 70,606 + +0.2 70,606 + -0.4 70,688 - BACOVA_04194 0.11 +0.4 70,691 + BACOVA_04194 0.11 +0.4 70,692 - BACOVA_04194 0.11 -1.4 70,692 - BACOVA_04194 0.11 -0.5 70,733 + BACOVA_04194 0.13 -0.2 70,759 + BACOVA_04194 0.14 -1.0 70,946 - BACOVA_04194 0.22 -1.5 70,947 + BACOVA_04194 0.22 -1.6 70,947 + BACOVA_04194 0.22 -0.3 70,947 + BACOVA_04194 0.22 +1.5 70,948 - BACOVA_04194 0.22 -0.8 70,993 + BACOVA_04194 0.24 -0.4 70,993 + BACOVA_04194 0.24 -0.2 71,000 - BACOVA_04194 0.24 -0.5 71,000 - BACOVA_04194 0.24 -0.7 71,001 + BACOVA_04194 0.24 +0.1 71,068 + BACOVA_04194 0.27 +0.6 71,069 - BACOVA_04194 0.27 -1.9 71,069 - BACOVA_04194 0.27 +0.2 71,081 + BACOVA_04194 0.27 -0.2 71,082 - BACOVA_04194 0.27 -0.7 71,125 + BACOVA_04194 0.29 -0.2 71,125 + BACOVA_04194 0.29 +0.2 71,126 - BACOVA_04194 0.29 -0.5 71,143 + BACOVA_04194 0.30 -0.0 71,144 - BACOVA_04194 0.30 -0.6 71,144 - BACOVA_04194 0.30 +0.6 71,172 + BACOVA_04194 0.31 +0.3 71,214 + BACOVA_04194 0.33 -0.3 71,215 - BACOVA_04194 0.33 -0.3 71,341 + BACOVA_04194 0.38 +1.4 71,414 - BACOVA_04194 0.41 -0.6 71,506 + BACOVA_04194 0.45 -1.4 71,533 + BACOVA_04194 0.46 +0.5 71,533 + BACOVA_04194 0.46 -0.2 71,533 + BACOVA_04194 0.46 +0.8 71,533 + BACOVA_04194 0.46 -0.2 71,582 - BACOVA_04194 0.48 -0.6 71,644 - BACOVA_04194 0.51 -0.7 71,660 + BACOVA_04194 0.51 -0.5 71,701 - BACOVA_04194 0.53 +0.5 71,726 - BACOVA_04194 0.54 +0.1 71,732 - BACOVA_04194 0.54 +1.0 71,732 - BACOVA_04194 0.54 -0.0 71,738 + BACOVA_04194 0.55 +1.1 71,771 + BACOVA_04194 0.56 -2.0 71,789 + BACOVA_04194 0.57 +0.1 71,790 - BACOVA_04194 0.57 +1.4 71,790 - BACOVA_04194 0.57 -1.0 71,865 - BACOVA_04194 0.60 -0.6 71,910 - BACOVA_04194 0.62 -0.1 71,925 + BACOVA_04194 0.62 +1.4 71,929 + BACOVA_04194 0.62 +0.7 71,951 - BACOVA_04194 0.63 -0.5 71,951 - BACOVA_04194 0.63 +1.0 72,013 - BACOVA_04194 0.66 -0.2 72,018 - BACOVA_04194 0.66 +1.0 72,018 - BACOVA_04194 0.66 +1.0 72,035 + BACOVA_04194 0.67 +1.0 72,035 + BACOVA_04194 0.67 -0.9 72,035 + BACOVA_04194 0.67 +1.3 72,036 - BACOVA_04194 0.67 +0.4 72,036 - BACOVA_04194 0.67 +1.1 72,036 - BACOVA_04194 0.67 -0.4 72,053 + BACOVA_04194 0.68 +0.2 72,168 + BACOVA_04194 0.72 -0.3 72,169 - BACOVA_04194 0.72 -1.5 72,173 - BACOVA_04194 0.72 -0.4 72,173 - BACOVA_04194 0.72 +0.4 72,174 + BACOVA_04194 0.73 +0.4 72,175 - BACOVA_04194 0.73 +0.6 72,187 + BACOVA_04194 0.73 +0.8 72,188 - BACOVA_04194 0.73 +1.4 72,188 - BACOVA_04194 0.73 +1.0 72,188 - BACOVA_04194 0.73 +0.5 72,189 + BACOVA_04194 0.73 +0.1 72,205 + BACOVA_04194 0.74 -0.6 72,206 - BACOVA_04194 0.74 -0.9 72,208 - BACOVA_04194 0.74 -0.9 72,226 - BACOVA_04194 0.75 -0.4 72,304 + BACOVA_04194 0.78 -0.9 72,305 - BACOVA_04194 0.78 +0.6 72,310 - BACOVA_04194 0.78 +0.8 72,310 - BACOVA_04194 0.78 -0.2 72,374 - BACOVA_04194 0.81 -0.6 72,386 + BACOVA_04194 0.81 +1.0 72,475 - BACOVA_04194 0.85 -0.6 72,479 + BACOVA_04194 0.85 +0.6 72,479 + BACOVA_04194 0.85 -0.5 72,480 - BACOVA_04194 0.85 +0.4 72,510 + BACOVA_04194 0.86 +0.8 72,555 + BACOVA_04194 0.88 +1.0 72,555 + BACOVA_04194 0.88 +0.6 72,555 + BACOVA_04194 0.88 +0.1 72,556 - BACOVA_04194 0.88 -1.6 72,667 - -1.0 72,670 + +1.0 72,671 - -0.3 72,671 - -0.6 72,671 - -0.1 72,679 - -0.8 72,720 + +0.2 72,720 + -0.9 72,721 - +0.1 72,721 - +0.1 72,725 + +0.3 72,726 - +0.5 72,769 + +0.5 72,913 + BACOVA_04195 0.11 +0.5 72,935 + BACOVA_04195 0.14 -2.0 72,935 + BACOVA_04195 0.14 -0.4 72,936 - BACOVA_04195 0.14 -0.4 72,967 - BACOVA_04195 0.18 -1.0 73,071 + BACOVA_04195 0.33 +0.6 73,071 + BACOVA_04195 0.33 +0.3 73,071 + BACOVA_04195 0.33 -0.1 73,072 - BACOVA_04195 0.33 +0.6 73,157 - BACOVA_04195 0.45 +0.6 73,182 + BACOVA_04195 0.48 -0.4 73,223 + BACOVA_04195 0.54 +0.6 73,224 - BACOVA_04195 0.54 -0.4 73,291 - BACOVA_04195 0.64 -0.4 73,303 - BACOVA_04195 0.65 -1.2 73,395 + BACOVA_04195 0.78 -1.1 73,405 - BACOVA_04195 0.79 -0.8 73,475 - BACOVA_04195 0.89 +0.1 73,475 - BACOVA_04195 0.89 +0.8 73,475 - BACOVA_04195 0.89 -0.5 73,531 + -0.3 73,546 - -0.5 73,551 + -0.2 73,552 - -0.5 73,554 + +0.4 73,555 - +2.3 73,558 + -0.3 73,571 - -0.2 73,576 + -0.3 73,679 - -0.2 73,727 + BACOVA_04196 0.13 -0.2 73,728 - BACOVA_04196 0.13 +0.5 73,728 - BACOVA_04196 0.13 -0.5 73,779 + BACOVA_04196 0.17 -0.6 73,780 - BACOVA_04196 0.17 +0.1 73,810 + BACOVA_04196 0.20 +0.5 73,817 + BACOVA_04196 0.20 +0.8 73,818 - BACOVA_04196 0.20 -1.1
Or see this region's nucleotide sequence