Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02950 and BACOVA_02951 are separated by 112 nucleotides BACOVA_02951 and BACOVA_02952 are separated by 71 nucleotides
BACOVA_02950: BACOVA_02950 - glycosyl hydrolase family 20, catalytic domain protein, at 22,549 to 25,080
_02950
BACOVA_02951: BACOVA_02951 - RNA polymerase sigma-70 factor, at 25,193 to 25,783
_02951
BACOVA_02952: BACOVA_02952 - sigma factor regulatory protein, FecR/PupR family, at 25,855 to 26,868
_02952
Position (kb) 25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.247 kb on - strand, within BACOVA_02950 at 24.252 kb on - strand, within BACOVA_02950 at 24.275 kb on + strand, within BACOVA_02950 at 24.276 kb on - strand, within BACOVA_02950 at 24.276 kb on - strand, within BACOVA_02950 at 24.279 kb on + strand, within BACOVA_02950 at 24.280 kb on - strand, within BACOVA_02950 at 24.294 kb on + strand, within BACOVA_02950 at 24.295 kb on - strand, within BACOVA_02950 at 24.321 kb on + strand, within BACOVA_02950 at 24.321 kb on + strand, within BACOVA_02950 at 24.321 kb on + strand, within BACOVA_02950 at 24.322 kb on - strand, within BACOVA_02950 at 24.322 kb on - strand, within BACOVA_02950 at 24.329 kb on + strand, within BACOVA_02950 at 24.379 kb on + strand, within BACOVA_02950 at 24.380 kb on - strand, within BACOVA_02950 at 24.381 kb on + strand, within BACOVA_02950 at 24.382 kb on - strand, within BACOVA_02950 at 24.387 kb on - strand, within BACOVA_02950 at 24.387 kb on - strand, within BACOVA_02950 at 24.418 kb on - strand, within BACOVA_02950 at 24.418 kb on - strand, within BACOVA_02950 at 24.418 kb on - strand, within BACOVA_02950 at 24.434 kb on - strand, within BACOVA_02950 at 24.448 kb on + strand, within BACOVA_02950 at 24.449 kb on - strand, within BACOVA_02950 at 24.454 kb on + strand, within BACOVA_02950 at 24.454 kb on + strand, within BACOVA_02950 at 24.476 kb on + strand, within BACOVA_02950 at 24.494 kb on + strand, within BACOVA_02950 at 24.495 kb on - strand, within BACOVA_02950 at 24.502 kb on + strand, within BACOVA_02950 at 24.503 kb on - strand, within BACOVA_02950 at 24.503 kb on - strand, within BACOVA_02950 at 24.503 kb on - strand, within BACOVA_02950 at 24.516 kb on + strand, within BACOVA_02950 at 24.516 kb on + strand, within BACOVA_02950 at 24.535 kb on + strand, within BACOVA_02950 at 24.535 kb on + strand, within BACOVA_02950 at 24.536 kb on - strand, within BACOVA_02950 at 24.537 kb on + strand, within BACOVA_02950 at 24.630 kb on + strand, within BACOVA_02950 at 24.691 kb on + strand, within BACOVA_02950 at 24.691 kb on + strand, within BACOVA_02950 at 24.694 kb on + strand, within BACOVA_02950 at 24.695 kb on - strand, within BACOVA_02950 at 24.776 kb on + strand, within BACOVA_02950 at 24.780 kb on + strand, within BACOVA_02950 at 24.780 kb on + strand, within BACOVA_02950 at 24.780 kb on + strand, within BACOVA_02950 at 24.781 kb on - strand, within BACOVA_02950 at 24.796 kb on - strand, within BACOVA_02950 at 24.799 kb on + strand, within BACOVA_02950 at 24.800 kb on - strand, within BACOVA_02950 at 24.802 kb on - strand, within BACOVA_02950 at 24.816 kb on - strand, within BACOVA_02950 at 24.820 kb on + strand, within BACOVA_02950 at 24.851 kb on + strand at 24.876 kb on + strand at 24.879 kb on + strand at 24.879 kb on + strand at 24.884 kb on + strand at 24.885 kb on - strand at 24.896 kb on + strand at 24.896 kb on + strand at 24.896 kb on + strand at 24.897 kb on - strand at 24.897 kb on - strand at 24.899 kb on + strand at 24.909 kb on + strand at 24.910 kb on - strand at 24.975 kb on - strand at 25.030 kb on + strand at 25.034 kb on + strand at 25.049 kb on + strand at 25.049 kb on + strand at 25.049 kb on + strand at 25.050 kb on - strand at 25.050 kb on - strand at 25.054 kb on - strand at 25.058 kb on + strand at 25.058 kb on + strand at 25.075 kb on + strand at 25.076 kb on - strand at 25.078 kb on + strand at 25.078 kb on + strand at 25.085 kb on + strand at 25.128 kb on + strand at 25.143 kb on + strand at 25.186 kb on + strand at 25.187 kb on - strand at 25.216 kb on - strand at 25.218 kb on + strand at 25.218 kb on + strand at 25.256 kb on + strand, within BACOVA_02951 at 25.256 kb on + strand, within BACOVA_02951 at 25.256 kb on + strand, within BACOVA_02951 at 25.257 kb on - strand, within BACOVA_02951 at 25.262 kb on + strand, within BACOVA_02951 at 25.262 kb on + strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.274 kb on + strand, within BACOVA_02951 at 25.309 kb on - strand, within BACOVA_02951 at 25.309 kb on - strand, within BACOVA_02951 at 25.397 kb on - strand, within BACOVA_02951 at 25.407 kb on - strand, within BACOVA_02951 at 25.407 kb on - strand, within BACOVA_02951 at 25.435 kb on + strand, within BACOVA_02951 at 25.436 kb on - strand, within BACOVA_02951 at 25.447 kb on + strand, within BACOVA_02951 at 25.448 kb on - strand, within BACOVA_02951 at 25.489 kb on + strand, within BACOVA_02951 at 25.490 kb on - strand, within BACOVA_02951 at 25.490 kb on - strand, within BACOVA_02951 at 25.503 kb on + strand, within BACOVA_02951 at 25.504 kb on - strand, within BACOVA_02951 at 25.542 kb on + strand, within BACOVA_02951 at 25.542 kb on + strand, within BACOVA_02951 at 25.546 kb on + strand, within BACOVA_02951 at 25.547 kb on - strand, within BACOVA_02951 at 25.547 kb on - strand, within BACOVA_02951 at 25.582 kb on + strand, within BACOVA_02951 at 25.583 kb on - strand, within BACOVA_02951 at 25.583 kb on - strand, within BACOVA_02951 at 25.590 kb on + strand, within BACOVA_02951 at 25.590 kb on + strand, within BACOVA_02951 at 25.594 kb on + strand, within BACOVA_02951 at 25.594 kb on + strand, within BACOVA_02951 at 25.595 kb on - strand, within BACOVA_02951 at 25.595 kb on - strand, within BACOVA_02951 at 25.674 kb on + strand, within BACOVA_02951 at 25.675 kb on - strand, within BACOVA_02951 at 25.697 kb on - strand, within BACOVA_02951 at 25.701 kb on - strand, within BACOVA_02951 at 25.719 kb on + strand, within BACOVA_02951 at 25.720 kb on - strand, within BACOVA_02951 at 25.728 kb on + strand at 25.740 kb on + strand at 25.741 kb on - strand at 25.744 kb on + strand at 25.749 kb on - strand at 25.827 kb on + strand at 25.839 kb on + strand at 25.839 kb on + strand at 25.839 kb on + strand at 25.842 kb on - strand at 25.842 kb on - strand at 25.876 kb on - strand at 25.897 kb on + strand at 26.035 kb on + strand, within BACOVA_02952 at 26.035 kb on + strand, within BACOVA_02952 at 26.041 kb on - strand, within BACOVA_02952 at 26.041 kb on - strand, within BACOVA_02952 at 26.058 kb on + strand, within BACOVA_02952 at 26.064 kb on + strand, within BACOVA_02952 at 26.074 kb on - strand, within BACOVA_02952 at 26.163 kb on - strand, within BACOVA_02952 at 26.186 kb on - strand, within BACOVA_02952 at 26.266 kb on + strand, within BACOVA_02952 at 26.267 kb on - strand, within BACOVA_02952 at 26.280 kb on + strand, within BACOVA_02952 at 26.280 kb on + strand, within BACOVA_02952 at 26.281 kb on - strand, within BACOVA_02952 at 26.288 kb on + strand, within BACOVA_02952 at 26.340 kb on + strand, within BACOVA_02952 at 26.340 kb on + strand, within BACOVA_02952 at 26.411 kb on + strand, within BACOVA_02952 at 26.412 kb on - strand, within BACOVA_02952 at 26.439 kb on - strand, within BACOVA_02952 at 26.455 kb on - strand, within BACOVA_02952 at 26.455 kb on - strand, within BACOVA_02952 at 26.489 kb on + strand, within BACOVA_02952 at 26.489 kb on + strand, within BACOVA_02952 at 26.489 kb on + strand, within BACOVA_02952 at 26.490 kb on - strand, within BACOVA_02952 at 26.490 kb on - strand, within BACOVA_02952 at 26.492 kb on + strand, within BACOVA_02952 at 26.499 kb on - strand, within BACOVA_02952 at 26.524 kb on - strand, within BACOVA_02952 at 26.524 kb on - strand, within BACOVA_02952 at 26.576 kb on + strand, within BACOVA_02952 at 26.580 kb on - strand, within BACOVA_02952 at 26.580 kb on - strand, within BACOVA_02952 at 26.580 kb on - strand, within BACOVA_02952 at 26.580 kb on - strand, within BACOVA_02952 at 26.606 kb on + strand, within BACOVA_02952 at 26.607 kb on - strand, within BACOVA_02952 at 26.704 kb on - strand, within BACOVA_02952 at 26.704 kb on - strand, within BACOVA_02952 at 26.714 kb on + strand, within BACOVA_02952 at 26.714 kb on + strand, within BACOVA_02952 at 26.714 kb on + strand, within BACOVA_02952 at 26.715 kb on - strand, within BACOVA_02952 at 26.715 kb on - strand, within BACOVA_02952 at 26.715 kb on - strand, within BACOVA_02952 at 26.715 kb on - strand, within BACOVA_02952 at 26.718 kb on + strand, within BACOVA_02952 at 26.741 kb on + strand, within BACOVA_02952 at 26.759 kb on - strand, within BACOVA_02952
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 24,247 - BACOVA_02950 0.67 +0.2 24,252 - BACOVA_02950 0.67 +0.6 24,275 + BACOVA_02950 0.68 +0.0 24,276 - BACOVA_02950 0.68 +0.6 24,276 - BACOVA_02950 0.68 +1.8 24,279 + BACOVA_02950 0.68 +0.4 24,280 - BACOVA_02950 0.68 -0.7 24,294 + BACOVA_02950 0.69 -0.6 24,295 - BACOVA_02950 0.69 -0.7 24,321 + BACOVA_02950 0.70 +0.1 24,321 + BACOVA_02950 0.70 -0.6 24,321 + BACOVA_02950 0.70 -0.4 24,322 - BACOVA_02950 0.70 -1.0 24,322 - BACOVA_02950 0.70 +0.1 24,329 + BACOVA_02950 0.70 +0.1 24,379 + BACOVA_02950 0.72 +1.4 24,380 - BACOVA_02950 0.72 +1.8 24,381 + BACOVA_02950 0.72 +0.8 24,382 - BACOVA_02950 0.72 +0.0 24,387 - BACOVA_02950 0.73 +0.2 24,387 - BACOVA_02950 0.73 +0.4 24,418 - BACOVA_02950 0.74 +0.6 24,418 - BACOVA_02950 0.74 -0.1 24,418 - BACOVA_02950 0.74 -0.9 24,434 - BACOVA_02950 0.74 -0.5 24,448 + BACOVA_02950 0.75 +1.0 24,449 - BACOVA_02950 0.75 -0.4 24,454 + BACOVA_02950 0.75 +0.3 24,454 + BACOVA_02950 0.75 -0.1 24,476 + BACOVA_02950 0.76 +0.1 24,494 + BACOVA_02950 0.77 -0.7 24,495 - BACOVA_02950 0.77 +1.0 24,502 + BACOVA_02950 0.77 -0.2 24,503 - BACOVA_02950 0.77 +0.2 24,503 - BACOVA_02950 0.77 +0.3 24,503 - BACOVA_02950 0.77 +0.8 24,516 + BACOVA_02950 0.78 -0.3 24,516 + BACOVA_02950 0.78 -0.1 24,535 + BACOVA_02950 0.78 -0.4 24,535 + BACOVA_02950 0.78 +0.6 24,536 - BACOVA_02950 0.78 +0.8 24,537 + BACOVA_02950 0.79 +0.9 24,630 + BACOVA_02950 0.82 -2.7 24,691 + BACOVA_02950 0.85 +0.0 24,691 + BACOVA_02950 0.85 -0.1 24,694 + BACOVA_02950 0.85 -1.6 24,695 - BACOVA_02950 0.85 +0.4 24,776 + BACOVA_02950 0.88 +0.9 24,780 + BACOVA_02950 0.88 +0.7 24,780 + BACOVA_02950 0.88 -0.8 24,780 + BACOVA_02950 0.88 +1.7 24,781 - BACOVA_02950 0.88 +0.4 24,796 - BACOVA_02950 0.89 +1.0 24,799 + BACOVA_02950 0.89 -0.1 24,800 - BACOVA_02950 0.89 -0.8 24,802 - BACOVA_02950 0.89 -0.8 24,816 - BACOVA_02950 0.90 -0.4 24,820 + BACOVA_02950 0.90 -0.2 24,851 + +0.0 24,876 + +0.0 24,879 + +0.8 24,879 + -0.8 24,884 + -0.0 24,885 - +0.2 24,896 + -0.7 24,896 + -1.7 24,896 + +0.3 24,897 - -1.0 24,897 - -0.6 24,899 + -0.9 24,909 + +0.3 24,910 - +1.8 24,975 - -0.1 25,030 + -1.4 25,034 + -0.8 25,049 + -2.1 25,049 + +0.1 25,049 + -3.1 25,050 - -0.4 25,050 - +0.0 25,054 - -0.2 25,058 + +0.2 25,058 + -1.6 25,075 + +0.9 25,076 - +0.6 25,078 + +0.2 25,078 + -0.2 25,085 + -0.4 25,128 + +0.5 25,143 + -0.7 25,186 + -1.2 25,187 - +0.2 25,216 - +0.3 25,218 + +0.7 25,218 + -0.4 25,256 + BACOVA_02951 0.11 -0.3 25,256 + BACOVA_02951 0.11 +0.1 25,256 + BACOVA_02951 0.11 -0.7 25,257 - BACOVA_02951 0.11 +0.4 25,262 + BACOVA_02951 0.12 -0.8 25,262 + BACOVA_02951 0.12 +0.5 25,263 - BACOVA_02951 0.12 +0.4 25,263 - BACOVA_02951 0.12 +0.1 25,263 - BACOVA_02951 0.12 +0.2 25,263 - BACOVA_02951 0.12 +0.2 25,263 - BACOVA_02951 0.12 +0.4 25,263 - BACOVA_02951 0.12 -1.8 25,263 - BACOVA_02951 0.12 +1.0 25,274 + BACOVA_02951 0.14 +0.1 25,309 - BACOVA_02951 0.20 +0.0 25,309 - BACOVA_02951 0.20 +0.0 25,397 - BACOVA_02951 0.35 -0.1 25,407 - BACOVA_02951 0.36 -0.2 25,407 - BACOVA_02951 0.36 +0.5 25,435 + BACOVA_02951 0.41 -1.3 25,436 - BACOVA_02951 0.41 +0.5 25,447 + BACOVA_02951 0.43 -1.3 25,448 - BACOVA_02951 0.43 +0.2 25,489 + BACOVA_02951 0.50 +0.7 25,490 - BACOVA_02951 0.50 +0.1 25,490 - BACOVA_02951 0.50 +0.1 25,503 + BACOVA_02951 0.52 +0.0 25,504 - BACOVA_02951 0.53 -0.1 25,542 + BACOVA_02951 0.59 +0.4 25,542 + BACOVA_02951 0.59 -0.3 25,546 + BACOVA_02951 0.60 +0.0 25,547 - BACOVA_02951 0.60 +0.5 25,547 - BACOVA_02951 0.60 +0.2 25,582 + BACOVA_02951 0.66 +1.0 25,583 - BACOVA_02951 0.66 -0.6 25,583 - BACOVA_02951 0.66 +1.2 25,590 + BACOVA_02951 0.67 -0.0 25,590 + BACOVA_02951 0.67 +0.5 25,594 + BACOVA_02951 0.68 +0.5 25,594 + BACOVA_02951 0.68 -0.6 25,595 - BACOVA_02951 0.68 +0.9 25,595 - BACOVA_02951 0.68 +1.0 25,674 + BACOVA_02951 0.81 +0.7 25,675 - BACOVA_02951 0.82 -0.7 25,697 - BACOVA_02951 0.85 +0.6 25,701 - BACOVA_02951 0.86 +0.6 25,719 + BACOVA_02951 0.89 +2.0 25,720 - BACOVA_02951 0.89 -0.1 25,728 + -0.5 25,740 + -1.2 25,741 - +0.3 25,744 + +0.4 25,749 - +0.4 25,827 + +0.3 25,839 + +0.0 25,839 + -1.6 25,839 + +0.7 25,842 - +0.3 25,842 - +0.0 25,876 - -0.2 25,897 + +0.4 26,035 + BACOVA_02952 0.18 -0.9 26,035 + BACOVA_02952 0.18 +1.0 26,041 - BACOVA_02952 0.18 +0.7 26,041 - BACOVA_02952 0.18 +0.2 26,058 + BACOVA_02952 0.20 -0.7 26,064 + BACOVA_02952 0.21 -0.4 26,074 - BACOVA_02952 0.22 +0.1 26,163 - BACOVA_02952 0.30 -0.2 26,186 - BACOVA_02952 0.33 +0.3 26,266 + BACOVA_02952 0.41 +0.3 26,267 - BACOVA_02952 0.41 +0.5 26,280 + BACOVA_02952 0.42 -0.5 26,280 + BACOVA_02952 0.42 -0.9 26,281 - BACOVA_02952 0.42 -0.3 26,288 + BACOVA_02952 0.43 -0.2 26,340 + BACOVA_02952 0.48 +0.4 26,340 + BACOVA_02952 0.48 -0.0 26,411 + BACOVA_02952 0.55 +1.5 26,412 - BACOVA_02952 0.55 +0.1 26,439 - BACOVA_02952 0.58 +0.3 26,455 - BACOVA_02952 0.59 -0.2 26,455 - BACOVA_02952 0.59 +0.2 26,489 + BACOVA_02952 0.63 +0.7 26,489 + BACOVA_02952 0.63 -0.1 26,489 + BACOVA_02952 0.63 -0.4 26,490 - BACOVA_02952 0.63 +0.0 26,490 - BACOVA_02952 0.63 +0.4 26,492 + BACOVA_02952 0.63 +0.1 26,499 - BACOVA_02952 0.64 +0.5 26,524 - BACOVA_02952 0.66 +0.5 26,524 - BACOVA_02952 0.66 -0.2 26,576 + BACOVA_02952 0.71 -1.8 26,580 - BACOVA_02952 0.71 +0.3 26,580 - BACOVA_02952 0.71 -2.6 26,580 - BACOVA_02952 0.71 -0.9 26,580 - BACOVA_02952 0.71 +1.4 26,606 + BACOVA_02952 0.74 -1.0 26,607 - BACOVA_02952 0.74 -0.4 26,704 - BACOVA_02952 0.84 -0.2 26,704 - BACOVA_02952 0.84 +1.3 26,714 + BACOVA_02952 0.85 -1.0 26,714 + BACOVA_02952 0.85 -0.6 26,714 + BACOVA_02952 0.85 -0.6 26,715 - BACOVA_02952 0.85 +0.8 26,715 - BACOVA_02952 0.85 +0.7 26,715 - BACOVA_02952 0.85 -1.1 26,715 - BACOVA_02952 0.85 -1.6 26,718 + BACOVA_02952 0.85 +0.2 26,741 + BACOVA_02952 0.87 -0.1 26,759 - BACOVA_02952 0.89 +0.8
Or see this region's nucleotide sequence