Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04228

Experiment: D-Glucose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04226 and BACOVA_04227 are separated by 77 nucleotidesBACOVA_04227 and BACOVA_04228 are separated by 19 nucleotidesBACOVA_04228 and BACOVA_04229 are separated by 114 nucleotidesBACOVA_04229 and BACOVA_04230 overlap by 8 nucleotidesBACOVA_04230 and BACOVA_04231 are separated by 283 nucleotides BACOVA_04226: BACOVA_04226 - gliding motility-associated protein GldE, at 105,365 to 106,720 _04226 BACOVA_04227: BACOVA_04227 - single-strand binding family protein, at 106,798 to 107,349 _04227 BACOVA_04228: BACOVA_04228 - A/G-specific adenine glycosylase, at 107,369 to 108,418 _04228 BACOVA_04229: BACOVA_04229 - hypothetical protein, at 108,533 to 108,637 _04229 BACOVA_04230: BACOVA_04230 - DNA-binding protein HU, at 108,630 to 108,905 _04230 BACOVA_04231: BACOVA_04231 - S1 RNA binding domain protein, at 109,189 to 110,763 _04231 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1 2at 106.406 kb on - strand, within BACOVA_04226at 106.506 kb on - strand, within BACOVA_04226at 106.541 kb on - strand, within BACOVA_04226at 106.750 kb on - strandat 106.788 kb on - strandat 106.796 kb on - strandat 106.832 kb on - strandat 107.335 kb on - strandat 107.341 kb on - strandat 107.364 kb on - strandat 107.364 kb on - strandat 107.373 kb on + strandat 107.384 kb on + strandat 107.424 kb on + strandat 107.425 kb on - strandat 107.425 kb on - strandat 107.486 kb on + strand, within BACOVA_04228at 107.493 kb on - strand, within BACOVA_04228at 107.500 kb on - strand, within BACOVA_04228at 107.511 kb on + strand, within BACOVA_04228at 107.512 kb on - strand, within BACOVA_04228at 107.512 kb on - strand, within BACOVA_04228at 107.544 kb on + strand, within BACOVA_04228at 107.648 kb on + strand, within BACOVA_04228at 107.648 kb on + strand, within BACOVA_04228at 107.649 kb on - strand, within BACOVA_04228at 107.680 kb on + strand, within BACOVA_04228at 107.699 kb on - strand, within BACOVA_04228at 107.702 kb on + strand, within BACOVA_04228at 107.703 kb on - strand, within BACOVA_04228at 107.704 kb on + strand, within BACOVA_04228at 107.705 kb on - strand, within BACOVA_04228at 107.730 kb on + strand, within BACOVA_04228at 107.731 kb on - strand, within BACOVA_04228at 107.863 kb on + strand, within BACOVA_04228at 107.920 kb on + strand, within BACOVA_04228at 107.987 kb on + strand, within BACOVA_04228at 108.047 kb on - strand, within BACOVA_04228at 108.052 kb on - strand, within BACOVA_04228at 108.068 kb on - strand, within BACOVA_04228at 108.184 kb on - strand, within BACOVA_04228at 108.201 kb on + strand, within BACOVA_04228at 108.242 kb on + strand, within BACOVA_04228at 108.242 kb on + strand, within BACOVA_04228at 108.262 kb on + strand, within BACOVA_04228at 108.282 kb on + strand, within BACOVA_04228at 108.282 kb on + strand, within BACOVA_04228at 108.314 kb on - strandat 108.393 kb on - strandat 108.419 kb on - strandat 108.435 kb on + strandat 108.436 kb on - strandat 108.438 kb on + strandat 108.443 kb on - strandat 108.450 kb on - strandat 108.450 kb on - strandat 108.456 kb on + strandat 108.456 kb on + strandat 108.457 kb on - strandat 108.457 kb on - strandat 108.494 kb on - strandat 108.510 kb on + strandat 108.510 kb on + strandat 108.543 kb on + strandat 108.543 kb on + strandat 108.919 kb on + strandat 108.919 kb on + strandat 109.001 kb on + strandat 109.079 kb on + strandat 109.079 kb on + strandat 109.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 10 mM (C)
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106,406 - BACOVA_04226 0.77 +0.1
106,506 - BACOVA_04226 0.84 -1.4
106,541 - BACOVA_04226 0.87 +0.0
106,750 - +0.4
106,788 - +0.3
106,796 - -0.6
106,832 - -0.8
107,335 - +0.9
107,341 - -0.6
107,364 - +0.2
107,364 - -1.0
107,373 + +0.4
107,384 + -0.9
107,424 + +0.4
107,425 - +0.1
107,425 - -0.2
107,486 + BACOVA_04228 0.11 +0.1
107,493 - BACOVA_04228 0.12 +0.0
107,500 - BACOVA_04228 0.12 -0.6
107,511 + BACOVA_04228 0.14 +0.7
107,512 - BACOVA_04228 0.14 +0.4
107,512 - BACOVA_04228 0.14 +0.4
107,544 + BACOVA_04228 0.17 +0.2
107,648 + BACOVA_04228 0.27 +0.4
107,648 + BACOVA_04228 0.27 +0.7
107,649 - BACOVA_04228 0.27 +0.1
107,680 + BACOVA_04228 0.30 +0.3
107,699 - BACOVA_04228 0.31 -0.2
107,702 + BACOVA_04228 0.32 +0.3
107,703 - BACOVA_04228 0.32 +0.7
107,704 + BACOVA_04228 0.32 -0.5
107,705 - BACOVA_04228 0.32 +2.4
107,730 + BACOVA_04228 0.34 +0.0
107,731 - BACOVA_04228 0.34 +0.9
107,863 + BACOVA_04228 0.47 -1.6
107,920 + BACOVA_04228 0.52 -1.0
107,987 + BACOVA_04228 0.59 +0.4
108,047 - BACOVA_04228 0.65 +0.6
108,052 - BACOVA_04228 0.65 +0.0
108,068 - BACOVA_04228 0.67 -0.2
108,184 - BACOVA_04228 0.78 +1.5
108,201 + BACOVA_04228 0.79 +0.5
108,242 + BACOVA_04228 0.83 +0.6
108,242 + BACOVA_04228 0.83 +0.6
108,262 + BACOVA_04228 0.85 +0.4
108,282 + BACOVA_04228 0.87 -0.1
108,282 + BACOVA_04228 0.87 +0.7
108,314 - +0.4
108,393 - +0.0
108,419 - +0.5
108,435 + +0.1
108,436 - +0.0
108,438 + -0.8
108,443 - +0.4
108,450 - +0.1
108,450 - -0.8
108,456 + -0.6
108,456 + -2.0
108,457 - +1.0
108,457 - -0.1
108,494 - +0.7
108,510 + -0.1
108,510 + +0.4
108,543 + -0.3
108,543 + +0.0
108,919 + +1.3
108,919 + -0.6
109,001 + +1.0
109,079 + +1.5
109,079 + +1.4
109,151 + -0.2

Or see this region's nucleotide sequence