Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05284

Experiment: RCM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05282 and BACOVA_05283 are separated by 70 nucleotidesBACOVA_05283 and BACOVA_05284 are separated by 30 nucleotidesBACOVA_05284 and BACOVA_05285 are separated by 112 nucleotides BACOVA_05282: BACOVA_05282 - KamA family protein, at 775,576 to 777,711 _05282 BACOVA_05283: BACOVA_05283 - hypothetical protein, at 777,782 to 777,922 _05283 BACOVA_05284: BACOVA_05284 - hypothetical protein, at 777,953 to 778,585 _05284 BACOVA_05285: BACOVA_05285 - amino acid carrier protein, at 778,698 to 780,086 _05285 Position (kb) 777 778 779Strain fitness (log2 ratio) -2 -1 0 1 2at 776.965 kb on - strand, within BACOVA_05282at 776.979 kb on - strand, within BACOVA_05282at 776.982 kb on - strand, within BACOVA_05282at 776.982 kb on - strand, within BACOVA_05282at 777.032 kb on + strand, within BACOVA_05282at 777.033 kb on - strand, within BACOVA_05282at 777.036 kb on + strand, within BACOVA_05282at 777.136 kb on + strand, within BACOVA_05282at 777.136 kb on + strand, within BACOVA_05282at 777.147 kb on - strand, within BACOVA_05282at 777.249 kb on + strand, within BACOVA_05282at 777.272 kb on - strand, within BACOVA_05282at 777.284 kb on - strand, within BACOVA_05282at 777.318 kb on + strand, within BACOVA_05282at 777.319 kb on - strand, within BACOVA_05282at 777.335 kb on - strand, within BACOVA_05282at 777.465 kb on + strand, within BACOVA_05282at 777.466 kb on - strand, within BACOVA_05282at 777.466 kb on - strand, within BACOVA_05282at 777.477 kb on + strand, within BACOVA_05282at 777.477 kb on + strand, within BACOVA_05282at 777.621 kb on + strandat 777.622 kb on - strandat 777.629 kb on - strandat 777.660 kb on - strandat 777.712 kb on - strandat 777.739 kb on - strandat 777.740 kb on + strandat 777.740 kb on + strandat 777.741 kb on - strandat 777.743 kb on + strandat 777.745 kb on + strandat 777.745 kb on + strandat 777.745 kb on + strandat 777.746 kb on - strandat 777.844 kb on - strand, within BACOVA_05283at 777.869 kb on - strand, within BACOVA_05283at 777.869 kb on - strand, within BACOVA_05283at 777.869 kb on - strand, within BACOVA_05283at 777.913 kb on - strandat 777.954 kb on + strandat 778.645 kb on - strandat 778.650 kb on - strandat 778.654 kb on - strandat 778.810 kb on + strandat 778.811 kb on - strandat 778.841 kb on + strand, within BACOVA_05285at 778.841 kb on + strand, within BACOVA_05285at 778.847 kb on + strand, within BACOVA_05285at 778.847 kb on + strand, within BACOVA_05285at 778.885 kb on - strand, within BACOVA_05285at 778.885 kb on - strand, within BACOVA_05285at 778.922 kb on + strand, within BACOVA_05285at 778.936 kb on - strand, within BACOVA_05285at 778.943 kb on - strand, within BACOVA_05285at 778.953 kb on + strand, within BACOVA_05285at 778.974 kb on - strand, within BACOVA_05285at 778.986 kb on - strand, within BACOVA_05285at 778.997 kb on - strand, within BACOVA_05285at 778.997 kb on - strand, within BACOVA_05285at 778.999 kb on + strand, within BACOVA_05285at 779.043 kb on + strand, within BACOVA_05285at 779.057 kb on + strand, within BACOVA_05285at 779.058 kb on - strand, within BACOVA_05285at 779.074 kb on - strand, within BACOVA_05285at 779.074 kb on - strand, within BACOVA_05285at 779.142 kb on - strand, within BACOVA_05285at 779.153 kb on + strand, within BACOVA_05285at 779.154 kb on - strand, within BACOVA_05285at 779.169 kb on - strand, within BACOVA_05285at 779.169 kb on - strand, within BACOVA_05285at 779.172 kb on + strand, within BACOVA_05285at 779.172 kb on + strand, within BACOVA_05285at 779.173 kb on - strand, within BACOVA_05285at 779.190 kb on - strand, within BACOVA_05285at 779.190 kb on - strand, within BACOVA_05285at 779.324 kb on + strand, within BACOVA_05285at 779.405 kb on + strand, within BACOVA_05285at 779.437 kb on - strand, within BACOVA_05285at 779.454 kb on - strand, within BACOVA_05285at 779.454 kb on - strand, within BACOVA_05285at 779.456 kb on + strand, within BACOVA_05285at 779.465 kb on + strand, within BACOVA_05285at 779.468 kb on + strand, within BACOVA_05285at 779.544 kb on + strand, within BACOVA_05285at 779.545 kb on - strand, within BACOVA_05285at 779.546 kb on + strand, within BACOVA_05285at 779.546 kb on + strand, within BACOVA_05285at 779.547 kb on - strand, within BACOVA_05285at 779.547 kb on - strand, within BACOVA_05285at 779.549 kb on + strand, within BACOVA_05285at 779.549 kb on + strand, within BACOVA_05285at 779.550 kb on - strand, within BACOVA_05285

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media
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776,965 - BACOVA_05282 0.65 -0.1
776,979 - BACOVA_05282 0.66 +0.5
776,982 - BACOVA_05282 0.66 -0.4
776,982 - BACOVA_05282 0.66 +1.4
777,032 + BACOVA_05282 0.68 +0.8
777,033 - BACOVA_05282 0.68 -1.3
777,036 + BACOVA_05282 0.68 -0.2
777,136 + BACOVA_05282 0.73 -0.1
777,136 + BACOVA_05282 0.73 -0.6
777,147 - BACOVA_05282 0.74 -0.6
777,249 + BACOVA_05282 0.78 -0.2
777,272 - BACOVA_05282 0.79 +0.6
777,284 - BACOVA_05282 0.80 +1.0
777,318 + BACOVA_05282 0.82 -0.3
777,319 - BACOVA_05282 0.82 +1.8
777,335 - BACOVA_05282 0.82 -0.4
777,465 + BACOVA_05282 0.88 -0.8
777,466 - BACOVA_05282 0.88 +0.3
777,466 - BACOVA_05282 0.88 -0.7
777,477 + BACOVA_05282 0.89 -0.6
777,477 + BACOVA_05282 0.89 -0.8
777,621 + +0.3
777,622 - +0.4
777,629 - +0.8
777,660 - +1.2
777,712 - +0.4
777,739 - -0.2
777,740 + -0.6
777,740 + -0.6
777,741 - -0.8
777,743 + +0.8
777,745 + +1.8
777,745 + -0.2
777,745 + -1.0
777,746 - -0.4
777,844 - BACOVA_05283 0.44 +1.1
777,869 - BACOVA_05283 0.62 +1.8
777,869 - BACOVA_05283 0.62 +1.2
777,869 - BACOVA_05283 0.62 +1.2
777,913 - +0.7
777,954 + -0.1
778,645 - -0.3
778,650 - +0.8
778,654 - +0.5
778,810 + +2.0
778,811 - +0.4
778,841 + BACOVA_05285 0.10 -2.0
778,841 + BACOVA_05285 0.10 +0.5
778,847 + BACOVA_05285 0.11 +0.7
778,847 + BACOVA_05285 0.11 +0.7
778,885 - BACOVA_05285 0.13 -1.6
778,885 - BACOVA_05285 0.13 +1.5
778,922 + BACOVA_05285 0.16 +0.6
778,936 - BACOVA_05285 0.17 +0.8
778,943 - BACOVA_05285 0.18 -0.3
778,953 + BACOVA_05285 0.18 -0.2
778,974 - BACOVA_05285 0.20 +0.2
778,986 - BACOVA_05285 0.21 -0.3
778,997 - BACOVA_05285 0.22 +0.0
778,997 - BACOVA_05285 0.22 -0.8
778,999 + BACOVA_05285 0.22 -0.8
779,043 + BACOVA_05285 0.25 +0.6
779,057 + BACOVA_05285 0.26 -0.9
779,058 - BACOVA_05285 0.26 -0.0
779,074 - BACOVA_05285 0.27 -0.5
779,074 - BACOVA_05285 0.27 +0.5
779,142 - BACOVA_05285 0.32 +0.1
779,153 + BACOVA_05285 0.33 -0.5
779,154 - BACOVA_05285 0.33 -0.2
779,169 - BACOVA_05285 0.34 +0.4
779,169 - BACOVA_05285 0.34 -0.7
779,172 + BACOVA_05285 0.34 +0.6
779,172 + BACOVA_05285 0.34 -0.7
779,173 - BACOVA_05285 0.34 +0.3
779,190 - BACOVA_05285 0.35 +1.3
779,190 - BACOVA_05285 0.35 -0.4
779,324 + BACOVA_05285 0.45 -0.2
779,405 + BACOVA_05285 0.51 -0.2
779,437 - BACOVA_05285 0.53 -0.4
779,454 - BACOVA_05285 0.54 -0.2
779,454 - BACOVA_05285 0.54 -0.0
779,456 + BACOVA_05285 0.55 -0.2
779,465 + BACOVA_05285 0.55 +0.6
779,468 + BACOVA_05285 0.55 -0.2
779,544 + BACOVA_05285 0.61 +0.1
779,545 - BACOVA_05285 0.61 -0.2
779,546 + BACOVA_05285 0.61 +0.1
779,546 + BACOVA_05285 0.61 +0.6
779,547 - BACOVA_05285 0.61 -0.2
779,547 - BACOVA_05285 0.61 +0.2
779,549 + BACOVA_05285 0.61 -0.9
779,549 + BACOVA_05285 0.61 +0.2
779,550 - BACOVA_05285 0.61 -1.0

Or see this region's nucleotide sequence