Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04202

Experiment: RCM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04201 and BACOVA_04202 are separated by 57 nucleotidesBACOVA_04202 and BACOVA_04203 are separated by 56 nucleotides BACOVA_04201: BACOVA_04201 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 77,816 to 79,069 _04201 BACOVA_04202: BACOVA_04202 - hypothetical protein, at 79,127 to 80,152 _04202 BACOVA_04203: BACOVA_04203 - glycosyltransferase, group 2 family protein, at 80,209 to 81,381 _04203 Position (kb) 79 80 81Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 78.223 kb on - strand, within BACOVA_04201at 78.279 kb on - strand, within BACOVA_04201at 78.296 kb on - strand, within BACOVA_04201at 78.368 kb on - strand, within BACOVA_04201at 78.368 kb on - strand, within BACOVA_04201at 78.378 kb on + strand, within BACOVA_04201at 78.379 kb on - strand, within BACOVA_04201at 78.412 kb on + strand, within BACOVA_04201at 78.438 kb on + strand, within BACOVA_04201at 78.439 kb on - strand, within BACOVA_04201at 78.439 kb on - strand, within BACOVA_04201at 78.452 kb on - strand, within BACOVA_04201at 78.550 kb on + strand, within BACOVA_04201at 78.551 kb on - strand, within BACOVA_04201at 78.719 kb on - strand, within BACOVA_04201at 78.765 kb on + strand, within BACOVA_04201at 78.791 kb on - strand, within BACOVA_04201at 78.791 kb on - strand, within BACOVA_04201at 78.862 kb on + strand, within BACOVA_04201at 78.862 kb on + strand, within BACOVA_04201at 78.862 kb on + strand, within BACOVA_04201at 78.863 kb on - strand, within BACOVA_04201at 78.865 kb on - strand, within BACOVA_04201at 78.869 kb on + strand, within BACOVA_04201at 78.922 kb on - strand, within BACOVA_04201at 79.015 kb on + strandat 79.068 kb on - strandat 79.098 kb on + strandat 79.098 kb on + strandat 79.098 kb on + strandat 79.107 kb on - strandat 79.154 kb on + strandat 79.247 kb on + strand, within BACOVA_04202at 79.247 kb on + strand, within BACOVA_04202at 79.258 kb on - strand, within BACOVA_04202at 79.352 kb on - strand, within BACOVA_04202at 79.421 kb on + strand, within BACOVA_04202at 79.421 kb on + strand, within BACOVA_04202at 79.422 kb on - strand, within BACOVA_04202at 79.424 kb on - strand, within BACOVA_04202at 79.424 kb on - strand, within BACOVA_04202at 79.479 kb on + strand, within BACOVA_04202at 79.480 kb on - strand, within BACOVA_04202at 79.480 kb on - strand, within BACOVA_04202at 79.493 kb on - strand, within BACOVA_04202at 79.515 kb on + strand, within BACOVA_04202at 79.515 kb on + strand, within BACOVA_04202at 79.515 kb on + strand, within BACOVA_04202at 79.516 kb on - strand, within BACOVA_04202at 79.595 kb on + strand, within BACOVA_04202at 79.632 kb on - strand, within BACOVA_04202at 79.632 kb on - strand, within BACOVA_04202at 79.667 kb on - strand, within BACOVA_04202at 79.693 kb on + strand, within BACOVA_04202at 79.694 kb on - strand, within BACOVA_04202at 79.756 kb on + strand, within BACOVA_04202at 79.762 kb on - strand, within BACOVA_04202at 79.766 kb on + strand, within BACOVA_04202at 79.767 kb on - strand, within BACOVA_04202at 79.854 kb on + strand, within BACOVA_04202at 79.874 kb on + strand, within BACOVA_04202at 79.874 kb on + strand, within BACOVA_04202at 79.874 kb on + strand, within BACOVA_04202at 79.875 kb on - strand, within BACOVA_04202at 80.009 kb on - strand, within BACOVA_04202at 80.101 kb on + strandat 80.118 kb on + strandat 80.134 kb on + strandat 80.135 kb on - strandat 80.201 kb on - strandat 80.263 kb on - strandat 80.302 kb on + strandat 80.302 kb on + strandat 80.302 kb on + strandat 80.303 kb on - strandat 80.313 kb on - strandat 80.326 kb on - strandat 80.334 kb on - strand, within BACOVA_04203at 80.358 kb on - strand, within BACOVA_04203at 80.358 kb on - strand, within BACOVA_04203at 80.427 kb on - strand, within BACOVA_04203at 80.505 kb on + strand, within BACOVA_04203at 80.507 kb on + strand, within BACOVA_04203at 80.507 kb on + strand, within BACOVA_04203at 80.507 kb on + strand, within BACOVA_04203at 80.508 kb on - strand, within BACOVA_04203at 80.508 kb on - strand, within BACOVA_04203at 80.572 kb on + strand, within BACOVA_04203at 80.572 kb on + strand, within BACOVA_04203at 80.584 kb on - strand, within BACOVA_04203at 80.656 kb on - strand, within BACOVA_04203at 80.769 kb on + strand, within BACOVA_04203at 80.874 kb on - strand, within BACOVA_04203at 80.874 kb on - strand, within BACOVA_04203at 80.949 kb on - strand, within BACOVA_04203at 80.952 kb on + strand, within BACOVA_04203at 80.952 kb on + strand, within BACOVA_04203at 80.952 kb on + strand, within BACOVA_04203at 80.953 kb on - strand, within BACOVA_04203at 81.003 kb on - strand, within BACOVA_04203at 81.011 kb on + strand, within BACOVA_04203at 81.011 kb on + strand, within BACOVA_04203at 81.011 kb on + strand, within BACOVA_04203at 81.012 kb on - strand, within BACOVA_04203at 81.012 kb on - strand, within BACOVA_04203at 81.015 kb on + strand, within BACOVA_04203at 81.050 kb on - strand, within BACOVA_04203at 81.050 kb on - strand, within BACOVA_04203at 81.051 kb on + strand, within BACOVA_04203at 81.051 kb on + strand, within BACOVA_04203at 81.051 kb on + strand, within BACOVA_04203at 81.052 kb on - strand, within BACOVA_04203at 81.052 kb on - strand, within BACOVA_04203at 81.052 kb on - strand, within BACOVA_04203at 81.080 kb on + strand, within BACOVA_04203at 81.089 kb on - strand, within BACOVA_04203at 81.122 kb on + strand, within BACOVA_04203at 81.128 kb on - strand, within BACOVA_04203at 81.128 kb on - strand, within BACOVA_04203at 81.139 kb on - strand, within BACOVA_04203at 81.152 kb on + strand, within BACOVA_04203

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media
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78,223 - BACOVA_04201 0.32 -1.3
78,279 - BACOVA_04201 0.37 -1.7
78,296 - BACOVA_04201 0.38 -1.1
78,368 - BACOVA_04201 0.44 -1.1
78,368 - BACOVA_04201 0.44 -0.1
78,378 + BACOVA_04201 0.45 -0.0
78,379 - BACOVA_04201 0.45 +1.2
78,412 + BACOVA_04201 0.48 +0.8
78,438 + BACOVA_04201 0.50 +0.6
78,439 - BACOVA_04201 0.50 +0.9
78,439 - BACOVA_04201 0.50 +0.1
78,452 - BACOVA_04201 0.51 -0.3
78,550 + BACOVA_04201 0.59 +0.4
78,551 - BACOVA_04201 0.59 +0.1
78,719 - BACOVA_04201 0.72 +1.2
78,765 + BACOVA_04201 0.76 +1.4
78,791 - BACOVA_04201 0.78 -0.3
78,791 - BACOVA_04201 0.78 -1.7
78,862 + BACOVA_04201 0.83 -0.0
78,862 + BACOVA_04201 0.83 -0.1
78,862 + BACOVA_04201 0.83 +0.5
78,863 - BACOVA_04201 0.83 -1.4
78,865 - BACOVA_04201 0.84 +0.7
78,869 + BACOVA_04201 0.84 -0.1
78,922 - BACOVA_04201 0.88 +1.4
79,015 + -0.5
79,068 - -0.1
79,098 + -0.5
79,098 + -0.1
79,098 + -0.6
79,107 - +0.7
79,154 + -1.2
79,247 + BACOVA_04202 0.12 -0.3
79,247 + BACOVA_04202 0.12 -1.3
79,258 - BACOVA_04202 0.13 -0.1
79,352 - BACOVA_04202 0.22 -0.6
79,421 + BACOVA_04202 0.29 -1.0
79,421 + BACOVA_04202 0.29 -1.3
79,422 - BACOVA_04202 0.29 -0.3
79,424 - BACOVA_04202 0.29 -0.8
79,424 - BACOVA_04202 0.29 -0.4
79,479 + BACOVA_04202 0.34 -0.6
79,480 - BACOVA_04202 0.34 +0.0
79,480 - BACOVA_04202 0.34 -0.9
79,493 - BACOVA_04202 0.36 +0.7
79,515 + BACOVA_04202 0.38 -0.1
79,515 + BACOVA_04202 0.38 -0.1
79,515 + BACOVA_04202 0.38 -0.4
79,516 - BACOVA_04202 0.38 -0.3
79,595 + BACOVA_04202 0.46 -0.1
79,632 - BACOVA_04202 0.49 -0.0
79,632 - BACOVA_04202 0.49 -0.1
79,667 - BACOVA_04202 0.53 +0.7
79,693 + BACOVA_04202 0.55 +0.5
79,694 - BACOVA_04202 0.55 -3.2
79,756 + BACOVA_04202 0.61 -0.0
79,762 - BACOVA_04202 0.62 -1.8
79,766 + BACOVA_04202 0.62 -0.1
79,767 - BACOVA_04202 0.62 -0.2
79,854 + BACOVA_04202 0.71 +0.3
79,874 + BACOVA_04202 0.73 +0.2
79,874 + BACOVA_04202 0.73 -0.2
79,874 + BACOVA_04202 0.73 +0.2
79,875 - BACOVA_04202 0.73 -2.0
80,009 - BACOVA_04202 0.86 -0.3
80,101 + +1.9
80,118 + -1.4
80,134 + -0.1
80,135 - +0.6
80,201 - -1.4
80,263 - -0.1
80,302 + -0.5
80,302 + -0.3
80,302 + -2.1
80,303 - +0.3
80,313 - +0.1
80,326 - -0.3
80,334 - BACOVA_04203 0.11 +0.1
80,358 - BACOVA_04203 0.13 -0.6
80,358 - BACOVA_04203 0.13 +0.2
80,427 - BACOVA_04203 0.19 +0.4
80,505 + BACOVA_04203 0.25 +0.1
80,507 + BACOVA_04203 0.25 -0.7
80,507 + BACOVA_04203 0.25 -0.2
80,507 + BACOVA_04203 0.25 -0.1
80,508 - BACOVA_04203 0.25 -1.6
80,508 - BACOVA_04203 0.25 -0.8
80,572 + BACOVA_04203 0.31 -0.2
80,572 + BACOVA_04203 0.31 -0.2
80,584 - BACOVA_04203 0.32 -0.4
80,656 - BACOVA_04203 0.38 -0.2
80,769 + BACOVA_04203 0.48 +0.7
80,874 - BACOVA_04203 0.57 -0.6
80,874 - BACOVA_04203 0.57 +0.2
80,949 - BACOVA_04203 0.63 +0.1
80,952 + BACOVA_04203 0.63 -0.2
80,952 + BACOVA_04203 0.63 -0.4
80,952 + BACOVA_04203 0.63 -0.1
80,953 - BACOVA_04203 0.63 -0.4
81,003 - BACOVA_04203 0.68 -0.6
81,011 + BACOVA_04203 0.68 -0.3
81,011 + BACOVA_04203 0.68 +0.2
81,011 + BACOVA_04203 0.68 +1.2
81,012 - BACOVA_04203 0.68 -1.6
81,012 - BACOVA_04203 0.68 +0.4
81,015 + BACOVA_04203 0.69 -0.4
81,050 - BACOVA_04203 0.72 +0.2
81,050 - BACOVA_04203 0.72 -0.6
81,051 + BACOVA_04203 0.72 -0.6
81,051 + BACOVA_04203 0.72 -0.6
81,051 + BACOVA_04203 0.72 -0.1
81,052 - BACOVA_04203 0.72 -1.1
81,052 - BACOVA_04203 0.72 +0.2
81,052 - BACOVA_04203 0.72 +0.2
81,080 + BACOVA_04203 0.74 +0.2
81,089 - BACOVA_04203 0.75 -0.8
81,122 + BACOVA_04203 0.78 -1.3
81,128 - BACOVA_04203 0.78 +0.4
81,128 - BACOVA_04203 0.78 +0.5
81,139 - BACOVA_04203 0.79 -0.1
81,152 + BACOVA_04203 0.80 -0.3

Or see this region's nucleotide sequence