Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03471

Experiment: RCM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03470 and BACOVA_03471 are separated by 252 nucleotidesBACOVA_03471 and BACOVA_03472 overlap by 1 nucleotidesBACOVA_03472 and BACOVA_03473 overlap by 20 nucleotides BACOVA_03470: BACOVA_03470 - aspartate-semialdehyde dehydrogenase, at 217,024 to 218,031 _03470 BACOVA_03471: BACOVA_03471 - universal stress family protein, at 218,284 to 220,419 _03471 BACOVA_03472: BACOVA_03472 - ThiF family protein, at 220,419 to 221,135 _03472 BACOVA_03473: BACOVA_03473 - ABC transporter, ATP-binding protein, at 221,116 to 221,799 _03473 Position (kb) 218 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 218.219 kb on - strandat 218.219 kb on - strandat 218.283 kb on + strandat 218.283 kb on + strandat 218.283 kb on + strandat 218.355 kb on + strandat 218.394 kb on + strandat 218.394 kb on + strandat 218.396 kb on + strandat 218.396 kb on + strandat 218.406 kb on + strandat 218.472 kb on + strandat 218.503 kb on + strand, within BACOVA_03471at 218.503 kb on + strand, within BACOVA_03471at 218.503 kb on + strand, within BACOVA_03471at 218.506 kb on + strand, within BACOVA_03471at 218.506 kb on + strand, within BACOVA_03471at 218.506 kb on + strand, within BACOVA_03471at 218.506 kb on + strand, within BACOVA_03471at 218.550 kb on + strand, within BACOVA_03471at 218.604 kb on + strand, within BACOVA_03471at 218.628 kb on + strand, within BACOVA_03471at 218.628 kb on + strand, within BACOVA_03471at 218.634 kb on + strand, within BACOVA_03471at 218.644 kb on + strand, within BACOVA_03471at 218.676 kb on + strand, within BACOVA_03471at 218.676 kb on + strand, within BACOVA_03471at 218.676 kb on + strand, within BACOVA_03471at 218.680 kb on + strand, within BACOVA_03471at 218.680 kb on + strand, within BACOVA_03471at 218.680 kb on + strand, within BACOVA_03471at 218.709 kb on + strand, within BACOVA_03471at 218.810 kb on + strand, within BACOVA_03471at 218.810 kb on + strand, within BACOVA_03471at 218.935 kb on + strand, within BACOVA_03471at 219.074 kb on + strand, within BACOVA_03471at 219.074 kb on + strand, within BACOVA_03471at 219.153 kb on + strand, within BACOVA_03471at 219.161 kb on + strand, within BACOVA_03471at 219.161 kb on + strand, within BACOVA_03471at 219.161 kb on + strand, within BACOVA_03471at 219.161 kb on + strand, within BACOVA_03471at 219.296 kb on + strand, within BACOVA_03471at 219.398 kb on + strand, within BACOVA_03471at 219.408 kb on + strand, within BACOVA_03471at 219.413 kb on + strand, within BACOVA_03471at 219.422 kb on + strand, within BACOVA_03471at 219.422 kb on + strand, within BACOVA_03471at 219.513 kb on + strand, within BACOVA_03471at 219.513 kb on + strand, within BACOVA_03471at 219.590 kb on + strand, within BACOVA_03471at 219.596 kb on + strand, within BACOVA_03471at 219.651 kb on + strand, within BACOVA_03471at 219.651 kb on + strand, within BACOVA_03471at 219.651 kb on + strand, within BACOVA_03471at 219.651 kb on + strand, within BACOVA_03471at 219.735 kb on + strand, within BACOVA_03471at 219.777 kb on + strand, within BACOVA_03471at 219.783 kb on + strand, within BACOVA_03471at 219.796 kb on + strand, within BACOVA_03471at 219.804 kb on + strand, within BACOVA_03471at 219.810 kb on + strand, within BACOVA_03471at 219.951 kb on + strand, within BACOVA_03471at 220.026 kb on + strand, within BACOVA_03471at 220.026 kb on + strand, within BACOVA_03471at 220.026 kb on + strand, within BACOVA_03471at 220.110 kb on + strand, within BACOVA_03471at 220.187 kb on + strand, within BACOVA_03471at 220.187 kb on + strand, within BACOVA_03471at 220.197 kb on + strand, within BACOVA_03471at 220.225 kb on + strandat 220.225 kb on + strandat 220.281 kb on + strandat 220.289 kb on + strandat 220.372 kb on + strandat 220.398 kb on + strandat 220.417 kb on + strandat 220.579 kb on + strand, within BACOVA_03472at 220.601 kb on + strand, within BACOVA_03472at 220.601 kb on + strand, within BACOVA_03472at 220.604 kb on + strand, within BACOVA_03472at 220.607 kb on + strand, within BACOVA_03472at 220.679 kb on + strand, within BACOVA_03472at 220.679 kb on + strand, within BACOVA_03472at 220.687 kb on + strand, within BACOVA_03472at 220.687 kb on + strand, within BACOVA_03472at 220.767 kb on + strand, within BACOVA_03472at 220.841 kb on + strand, within BACOVA_03472at 220.886 kb on + strand, within BACOVA_03472at 221.079 kb on + strandat 221.079 kb on + strandat 221.079 kb on + strandat 221.081 kb on + strandat 221.115 kb on + strandat 221.133 kb on + strandat 221.142 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media
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218,219 - -1.6
218,219 - -0.2
218,283 + -0.9
218,283 + -0.6
218,283 + +0.0
218,355 + -0.3
218,394 + +0.1
218,394 + -0.5
218,396 + +0.3
218,396 + -0.0
218,406 + -0.5
218,472 + +0.6
218,503 + BACOVA_03471 0.10 -0.3
218,503 + BACOVA_03471 0.10 +0.5
218,503 + BACOVA_03471 0.10 -0.2
218,506 + BACOVA_03471 0.10 -0.1
218,506 + BACOVA_03471 0.10 -0.3
218,506 + BACOVA_03471 0.10 -1.5
218,506 + BACOVA_03471 0.10 -0.2
218,550 + BACOVA_03471 0.12 -0.3
218,604 + BACOVA_03471 0.15 -1.1
218,628 + BACOVA_03471 0.16 -1.2
218,628 + BACOVA_03471 0.16 -0.6
218,634 + BACOVA_03471 0.16 +0.2
218,644 + BACOVA_03471 0.17 -1.2
218,676 + BACOVA_03471 0.18 +0.1
218,676 + BACOVA_03471 0.18 -0.1
218,676 + BACOVA_03471 0.18 -0.2
218,680 + BACOVA_03471 0.19 -0.7
218,680 + BACOVA_03471 0.19 +0.3
218,680 + BACOVA_03471 0.19 +1.1
218,709 + BACOVA_03471 0.20 -0.9
218,810 + BACOVA_03471 0.25 -0.5
218,810 + BACOVA_03471 0.25 +0.2
218,935 + BACOVA_03471 0.30 -0.1
219,074 + BACOVA_03471 0.37 +0.3
219,074 + BACOVA_03471 0.37 -0.2
219,153 + BACOVA_03471 0.41 +0.5
219,161 + BACOVA_03471 0.41 -0.3
219,161 + BACOVA_03471 0.41 -0.3
219,161 + BACOVA_03471 0.41 -0.2
219,161 + BACOVA_03471 0.41 -0.1
219,296 + BACOVA_03471 0.47 +0.0
219,398 + BACOVA_03471 0.52 +0.9
219,408 + BACOVA_03471 0.53 +0.2
219,413 + BACOVA_03471 0.53 +0.4
219,422 + BACOVA_03471 0.53 +0.2
219,422 + BACOVA_03471 0.53 -0.3
219,513 + BACOVA_03471 0.58 +1.1
219,513 + BACOVA_03471 0.58 +0.5
219,590 + BACOVA_03471 0.61 -2.3
219,596 + BACOVA_03471 0.61 -1.8
219,651 + BACOVA_03471 0.64 +0.1
219,651 + BACOVA_03471 0.64 +0.4
219,651 + BACOVA_03471 0.64 -0.5
219,651 + BACOVA_03471 0.64 -1.1
219,735 + BACOVA_03471 0.68 -1.1
219,777 + BACOVA_03471 0.70 -0.7
219,783 + BACOVA_03471 0.70 +2.9
219,796 + BACOVA_03471 0.71 -2.4
219,804 + BACOVA_03471 0.71 -0.1
219,810 + BACOVA_03471 0.71 -0.3
219,951 + BACOVA_03471 0.78 +0.7
220,026 + BACOVA_03471 0.82 +0.5
220,026 + BACOVA_03471 0.82 +0.4
220,026 + BACOVA_03471 0.82 +1.8
220,110 + BACOVA_03471 0.85 +0.2
220,187 + BACOVA_03471 0.89 +0.3
220,187 + BACOVA_03471 0.89 +0.1
220,197 + BACOVA_03471 0.90 -1.6
220,225 + +0.5
220,225 + +0.8
220,281 + +0.4
220,289 + -1.3
220,372 + -0.5
220,398 + -0.0
220,417 + -0.1
220,579 + BACOVA_03472 0.22 +0.2
220,601 + BACOVA_03472 0.25 -0.4
220,601 + BACOVA_03472 0.25 -0.0
220,604 + BACOVA_03472 0.26 -1.1
220,607 + BACOVA_03472 0.26 +0.5
220,679 + BACOVA_03472 0.36 -1.5
220,679 + BACOVA_03472 0.36 -0.5
220,687 + BACOVA_03472 0.37 -0.3
220,687 + BACOVA_03472 0.37 +0.1
220,767 + BACOVA_03472 0.49 -0.2
220,841 + BACOVA_03472 0.59 +0.3
220,886 + BACOVA_03472 0.65 -0.3
221,079 + -0.2
221,079 + +0.2
221,079 + -0.2
221,081 + +0.2
221,115 + +0.2
221,133 + +0.3
221,142 + +0.5

Or see this region's nucleotide sequence