Experiment: RCM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02573 and BACOVA_02574 are separated by 13 nucleotides BACOVA_02574 and BACOVA_02575 are separated by 226 nucleotides BACOVA_02575 and BACOVA_02576 are separated by 35 nucleotides BACOVA_02576 and BACOVA_02577 are separated by 143 nucleotides BACOVA_02577 and BACOVA_02578 are separated by 162 nucleotides BACOVA_02578 and BACOVA_02579 are separated by 120 nucleotides BACOVA_02579 and BACOVA_02580 are separated by 63 nucleotides
BACOVA_02573: BACOVA_02573 - hypothetical protein, at 341,982 to 342,491
_02573
BACOVA_02574: BACOVA_02574 - hypothetical protein, at 342,505 to 342,801
_02574
BACOVA_02575: BACOVA_02575 - tRNA-Pro, at 343,028 to 343,102
_02575
BACOVA_02576: BACOVA_02576 - tRNA-Pro, at 343,138 to 343,212
_02576
BACOVA_02577: BACOVA_02577 - hypothetical protein, at 343,356 to 343,523
_02577
BACOVA_02578: BACOVA_02578 - hypothetical protein, at 343,686 to 343,814
_02578
BACOVA_02579: BACOVA_02579 - hypothetical protein, at 343,935 to 344,141
_02579
BACOVA_02580: BACOVA_02580 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 344,205 to 345,476
_02580
Position (kb) 343
344 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.143 kb on + strand, within BACOVA_02573 at 342.144 kb on - strand, within BACOVA_02573 at 342.145 kb on + strand, within BACOVA_02573 at 342.145 kb on + strand, within BACOVA_02573 at 342.145 kb on + strand, within BACOVA_02573 at 342.190 kb on - strand, within BACOVA_02573 at 342.191 kb on + strand, within BACOVA_02573 at 342.191 kb on + strand, within BACOVA_02573 at 342.230 kb on - strand, within BACOVA_02573 at 342.230 kb on - strand, within BACOVA_02573 at 342.230 kb on - strand, within BACOVA_02573 at 342.233 kb on + strand, within BACOVA_02573 at 342.234 kb on - strand, within BACOVA_02573 at 342.292 kb on + strand, within BACOVA_02573 at 342.293 kb on - strand, within BACOVA_02573 at 342.335 kb on + strand, within BACOVA_02573 at 342.336 kb on - strand, within BACOVA_02573 at 342.344 kb on - strand, within BACOVA_02573 at 342.355 kb on - strand, within BACOVA_02573 at 342.355 kb on - strand, within BACOVA_02573 at 342.367 kb on - strand, within BACOVA_02573 at 342.389 kb on + strand, within BACOVA_02573 at 342.390 kb on - strand, within BACOVA_02573 at 342.414 kb on + strand, within BACOVA_02573 at 342.417 kb on - strand, within BACOVA_02573 at 342.419 kb on - strand, within BACOVA_02573 at 342.419 kb on - strand, within BACOVA_02573 at 342.450 kb on + strand at 342.456 kb on + strand at 342.489 kb on - strand at 342.491 kb on + strand at 342.492 kb on - strand at 342.537 kb on - strand, within BACOVA_02574 at 342.539 kb on + strand, within BACOVA_02574 at 342.548 kb on - strand, within BACOVA_02574 at 342.572 kb on - strand, within BACOVA_02574 at 342.625 kb on - strand, within BACOVA_02574 at 342.678 kb on - strand, within BACOVA_02574 at 342.730 kb on - strand, within BACOVA_02574 at 342.730 kb on - strand, within BACOVA_02574 at 342.772 kb on + strand at 342.784 kb on - strand at 342.849 kb on + strand at 342.877 kb on + strand at 342.877 kb on + strand at 342.877 kb on + strand at 342.884 kb on - strand at 342.884 kb on - strand at 342.924 kb on - strand at 342.948 kb on - strand at 342.954 kb on - strand at 342.959 kb on - strand at 342.962 kb on + strand at 342.963 kb on - strand at 342.980 kb on - strand at 342.982 kb on + strand at 342.988 kb on + strand at 342.989 kb on - strand at 342.989 kb on - strand at 343.118 kb on - strand at 343.120 kb on + strand at 343.120 kb on + strand at 343.439 kb on + strand, within BACOVA_02577 at 343.656 kb on + strand at 343.657 kb on - strand at 343.657 kb on - strand at 343.784 kb on + strand, within BACOVA_02578 at 343.784 kb on + strand, within BACOVA_02578 at 343.789 kb on + strand, within BACOVA_02578 at 343.804 kb on - strand at 343.815 kb on - strand at 343.841 kb on - strand at 343.847 kb on - strand at 343.872 kb on + strand at 343.894 kb on + strand at 343.895 kb on - strand at 344.072 kb on + strand, within BACOVA_02579 at 344.073 kb on - strand, within BACOVA_02579 at 344.115 kb on - strand, within BACOVA_02579 at 344.129 kb on + strand at 344.130 kb on - strand at 344.132 kb on + strand at 344.139 kb on + strand at 344.140 kb on - strand at 344.153 kb on - strand at 344.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media remove 342,143 + BACOVA_02573 0.32 -2.6 342,144 - BACOVA_02573 0.32 +0.5 342,145 + BACOVA_02573 0.32 -0.4 342,145 + BACOVA_02573 0.32 -0.6 342,145 + BACOVA_02573 0.32 +1.0 342,190 - BACOVA_02573 0.41 -1.4 342,191 + BACOVA_02573 0.41 -0.3 342,191 + BACOVA_02573 0.41 -0.1 342,230 - BACOVA_02573 0.49 -2.6 342,230 - BACOVA_02573 0.49 +0.0 342,230 - BACOVA_02573 0.49 -1.5 342,233 + BACOVA_02573 0.49 -2.2 342,234 - BACOVA_02573 0.49 -0.4 342,292 + BACOVA_02573 0.61 -0.1 342,293 - BACOVA_02573 0.61 -0.1 342,335 + BACOVA_02573 0.69 -0.5 342,336 - BACOVA_02573 0.69 -0.3 342,344 - BACOVA_02573 0.71 +0.3 342,355 - BACOVA_02573 0.73 -0.8 342,355 - BACOVA_02573 0.73 +1.0 342,367 - BACOVA_02573 0.75 -1.0 342,389 + BACOVA_02573 0.80 -1.5 342,390 - BACOVA_02573 0.80 +2.0 342,414 + BACOVA_02573 0.85 -1.5 342,417 - BACOVA_02573 0.85 -1.4 342,419 - BACOVA_02573 0.86 -0.0 342,419 - BACOVA_02573 0.86 +1.4 342,450 + -0.4 342,456 + +1.5 342,489 - -1.1 342,491 + -0.9 342,492 - +0.4 342,537 - BACOVA_02574 0.11 +0.4 342,539 + BACOVA_02574 0.11 -0.8 342,548 - BACOVA_02574 0.14 -1.8 342,572 - BACOVA_02574 0.23 +1.0 342,625 - BACOVA_02574 0.40 +0.6 342,678 - BACOVA_02574 0.58 -1.0 342,730 - BACOVA_02574 0.76 -0.0 342,730 - BACOVA_02574 0.76 -0.3 342,772 + +1.0 342,784 - +0.5 342,849 + -0.0 342,877 + -0.6 342,877 + +1.0 342,877 + -0.8 342,884 - +1.0 342,884 - -0.4 342,924 - -0.8 342,948 - -0.6 342,954 - -0.6 342,959 - -0.4 342,962 + -1.2 342,963 - -1.4 342,980 - +0.4 342,982 + -1.6 342,988 + -0.2 342,989 - -1.0 342,989 - -1.4 343,118 - -0.3 343,120 + +0.2 343,120 + -0.6 343,439 + BACOVA_02577 0.49 -1.2 343,656 + -1.4 343,657 - -0.7 343,657 - -2.7 343,784 + BACOVA_02578 0.76 -0.6 343,784 + BACOVA_02578 0.76 -0.2 343,789 + BACOVA_02578 0.80 +0.7 343,804 - +0.2 343,815 - +1.0 343,841 - -1.0 343,847 - +0.4 343,872 + +0.2 343,894 + +0.4 343,895 - -1.0 344,072 + BACOVA_02579 0.66 +0.5 344,073 - BACOVA_02579 0.67 -0.0 344,115 - BACOVA_02579 0.87 +1.0 344,129 + +0.6 344,130 - -0.3 344,132 + +0.8 344,139 + -0.5 344,140 - -0.3 344,153 - +0.8 344,164 + -0.8
Or see this region's nucleotide sequence