Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02429

Experiment: RCM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02428 and BACOVA_02429 are separated by 138 nucleotidesBACOVA_02429 and BACOVA_02430 are separated by 272 nucleotides BACOVA_02428: BACOVA_02428 - putative dTDP-4-dehydrorhamnose reductase, at 192,733 to 193,644 _02428 BACOVA_02429: BACOVA_02429 - hypothetical protein, at 193,783 to 194,952 _02429 BACOVA_02430: BACOVA_02430 - hypothetical protein, at 195,225 to 196,508 _02430 Position (kb) 193 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 192.810 kb on + strandat 192.811 kb on - strandat 192.991 kb on + strand, within BACOVA_02428at 193.019 kb on + strand, within BACOVA_02428at 193.019 kb on + strand, within BACOVA_02428at 193.054 kb on + strand, within BACOVA_02428at 193.087 kb on + strand, within BACOVA_02428at 193.088 kb on - strand, within BACOVA_02428at 193.094 kb on - strand, within BACOVA_02428at 193.094 kb on - strand, within BACOVA_02428at 193.098 kb on + strand, within BACOVA_02428at 193.101 kb on + strand, within BACOVA_02428at 193.102 kb on - strand, within BACOVA_02428at 193.102 kb on - strand, within BACOVA_02428at 193.248 kb on - strand, within BACOVA_02428at 193.248 kb on - strand, within BACOVA_02428at 193.249 kb on + strand, within BACOVA_02428at 193.250 kb on - strand, within BACOVA_02428at 193.250 kb on - strand, within BACOVA_02428at 193.250 kb on - strand, within BACOVA_02428at 193.369 kb on - strand, within BACOVA_02428at 193.373 kb on + strand, within BACOVA_02428at 193.374 kb on - strand, within BACOVA_02428at 193.374 kb on - strand, within BACOVA_02428at 193.374 kb on - strand, within BACOVA_02428at 193.486 kb on + strand, within BACOVA_02428at 193.488 kb on + strand, within BACOVA_02428at 193.508 kb on + strand, within BACOVA_02428at 193.532 kb on - strand, within BACOVA_02428at 193.533 kb on + strand, within BACOVA_02428at 193.565 kb on + strandat 193.572 kb on + strandat 193.591 kb on + strandat 193.630 kb on + strandat 193.631 kb on - strandat 193.653 kb on - strandat 193.654 kb on + strandat 193.654 kb on + strandat 193.654 kb on + strandat 193.655 kb on - strandat 193.668 kb on - strandat 193.733 kb on - strandat 193.757 kb on - strandat 193.757 kb on - strandat 193.768 kb on + strandat 193.812 kb on - strandat 193.852 kb on - strandat 193.852 kb on - strandat 193.852 kb on - strandat 193.852 kb on - strandat 193.852 kb on - strandat 193.893 kb on + strandat 193.894 kb on - strandat 193.900 kb on - strand, within BACOVA_02429at 193.900 kb on - strand, within BACOVA_02429at 193.900 kb on - strand, within BACOVA_02429at 193.942 kb on - strand, within BACOVA_02429at 194.010 kb on + strand, within BACOVA_02429at 194.049 kb on + strand, within BACOVA_02429at 194.050 kb on - strand, within BACOVA_02429at 194.055 kb on + strand, within BACOVA_02429at 194.074 kb on - strand, within BACOVA_02429at 194.074 kb on - strand, within BACOVA_02429at 194.214 kb on - strand, within BACOVA_02429at 194.242 kb on - strand, within BACOVA_02429at 194.332 kb on + strand, within BACOVA_02429at 194.333 kb on - strand, within BACOVA_02429at 194.337 kb on + strand, within BACOVA_02429at 194.338 kb on - strand, within BACOVA_02429at 194.350 kb on + strand, within BACOVA_02429at 194.395 kb on + strand, within BACOVA_02429at 194.395 kb on + strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.447 kb on - strand, within BACOVA_02429at 194.494 kb on - strand, within BACOVA_02429at 194.494 kb on - strand, within BACOVA_02429at 194.541 kb on + strand, within BACOVA_02429at 194.541 kb on + strand, within BACOVA_02429at 194.550 kb on + strand, within BACOVA_02429at 194.563 kb on + strand, within BACOVA_02429at 194.564 kb on - strand, within BACOVA_02429at 194.630 kb on - strand, within BACOVA_02429at 194.646 kb on + strand, within BACOVA_02429at 194.646 kb on + strand, within BACOVA_02429at 194.662 kb on - strand, within BACOVA_02429at 194.667 kb on + strand, within BACOVA_02429at 194.677 kb on + strand, within BACOVA_02429at 194.677 kb on + strand, within BACOVA_02429at 194.678 kb on - strand, within BACOVA_02429at 194.678 kb on - strand, within BACOVA_02429at 194.863 kb on + strandat 194.863 kb on + strandat 194.864 kb on - strandat 194.871 kb on + strandat 194.872 kb on - strandat 194.944 kb on - strandat 194.950 kb on + strandat 194.967 kb on + strandat 194.975 kb on + strandat 194.975 kb on + strandat 194.979 kb on + strandat 194.979 kb on + strandat 194.993 kb on - strandat 195.039 kb on + strandat 195.129 kb on - strandat 195.207 kb on - strandat 195.207 kb on - strandat 195.215 kb on + strandat 195.216 kb on - strandat 195.239 kb on + strandat 195.239 kb on + strandat 195.241 kb on + strandat 195.241 kb on + strandat 195.315 kb on - strandat 195.338 kb on - strandat 195.338 kb on - strandat 195.340 kb on + strandat 195.340 kb on + strandat 195.359 kb on + strand, within BACOVA_02430at 195.445 kb on - strand, within BACOVA_02430at 195.458 kb on - strand, within BACOVA_02430at 195.477 kb on + strand, within BACOVA_02430at 195.477 kb on + strand, within BACOVA_02430at 195.478 kb on - strand, within BACOVA_02430at 195.482 kb on + strand, within BACOVA_02430at 195.488 kb on + strand, within BACOVA_02430at 195.489 kb on - strand, within BACOVA_02430at 195.489 kb on - strand, within BACOVA_02430at 195.536 kb on + strand, within BACOVA_02430at 195.550 kb on - strand, within BACOVA_02430at 195.673 kb on - strand, within BACOVA_02430at 195.675 kb on - strand, within BACOVA_02430at 195.684 kb on + strand, within BACOVA_02430at 195.685 kb on - strand, within BACOVA_02430at 195.697 kb on - strand, within BACOVA_02430at 195.719 kb on - strand, within BACOVA_02430at 195.726 kb on + strand, within BACOVA_02430at 195.737 kb on + strand, within BACOVA_02430at 195.738 kb on - strand, within BACOVA_02430at 195.738 kb on - strand, within BACOVA_02430at 195.744 kb on + strand, within BACOVA_02430at 195.745 kb on - strand, within BACOVA_02430at 195.745 kb on - strand, within BACOVA_02430at 195.775 kb on + strand, within BACOVA_02430at 195.775 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.819 kb on - strand, within BACOVA_02430at 195.831 kb on + strand, within BACOVA_02430

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media
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192,810 + -0.3
192,811 - -0.0
192,991 + BACOVA_02428 0.28 -0.2
193,019 + BACOVA_02428 0.31 +1.2
193,019 + BACOVA_02428 0.31 +0.3
193,054 + BACOVA_02428 0.35 +1.0
193,087 + BACOVA_02428 0.39 +0.2
193,088 - BACOVA_02428 0.39 +0.7
193,094 - BACOVA_02428 0.40 -0.5
193,094 - BACOVA_02428 0.40 -0.5
193,098 + BACOVA_02428 0.40 +0.3
193,101 + BACOVA_02428 0.40 -0.0
193,102 - BACOVA_02428 0.40 +0.4
193,102 - BACOVA_02428 0.40 -0.4
193,248 - BACOVA_02428 0.56 +0.2
193,248 - BACOVA_02428 0.56 -0.0
193,249 + BACOVA_02428 0.57 +0.3
193,250 - BACOVA_02428 0.57 -1.6
193,250 - BACOVA_02428 0.57 -1.4
193,250 - BACOVA_02428 0.57 -0.2
193,369 - BACOVA_02428 0.70 +0.0
193,373 + BACOVA_02428 0.70 +1.0
193,374 - BACOVA_02428 0.70 -0.3
193,374 - BACOVA_02428 0.70 +0.2
193,374 - BACOVA_02428 0.70 +0.4
193,486 + BACOVA_02428 0.83 +0.0
193,488 + BACOVA_02428 0.83 +0.2
193,508 + BACOVA_02428 0.85 -0.0
193,532 - BACOVA_02428 0.88 -0.0
193,533 + BACOVA_02428 0.88 -0.2
193,565 + +0.5
193,572 + -0.4
193,591 + +0.4
193,630 + +1.0
193,631 - -0.0
193,653 - +1.2
193,654 + +0.2
193,654 + -2.4
193,654 + -1.4
193,655 - +0.7
193,668 - +0.3
193,733 - -0.4
193,757 - -0.3
193,757 - +0.7
193,768 + +0.7
193,812 - -0.2
193,852 - -0.0
193,852 - +0.3
193,852 - -0.9
193,852 - -0.0
193,852 - -0.0
193,893 + +0.1
193,894 - -0.4
193,900 - BACOVA_02429 0.10 -0.6
193,900 - BACOVA_02429 0.10 +0.5
193,900 - BACOVA_02429 0.10 -1.2
193,942 - BACOVA_02429 0.14 +0.7
194,010 + BACOVA_02429 0.19 -0.6
194,049 + BACOVA_02429 0.23 +0.4
194,050 - BACOVA_02429 0.23 -0.1
194,055 + BACOVA_02429 0.23 -0.0
194,074 - BACOVA_02429 0.25 -0.0
194,074 - BACOVA_02429 0.25 -0.1
194,214 - BACOVA_02429 0.37 -0.4
194,242 - BACOVA_02429 0.39 +2.3
194,332 + BACOVA_02429 0.47 -0.2
194,333 - BACOVA_02429 0.47 +0.1
194,337 + BACOVA_02429 0.47 +1.0
194,338 - BACOVA_02429 0.47 -0.7
194,350 + BACOVA_02429 0.48 +1.0
194,395 + BACOVA_02429 0.52 +0.1
194,395 + BACOVA_02429 0.52 -1.5
194,396 - BACOVA_02429 0.52 +0.3
194,396 - BACOVA_02429 0.52 -0.2
194,396 - BACOVA_02429 0.52 +0.6
194,447 - BACOVA_02429 0.57 -0.9
194,494 - BACOVA_02429 0.61 -0.6
194,494 - BACOVA_02429 0.61 -0.7
194,541 + BACOVA_02429 0.65 +0.2
194,541 + BACOVA_02429 0.65 -0.4
194,550 + BACOVA_02429 0.66 -1.0
194,563 + BACOVA_02429 0.67 -0.6
194,564 - BACOVA_02429 0.67 -0.4
194,630 - BACOVA_02429 0.72 -0.6
194,646 + BACOVA_02429 0.74 -0.5
194,646 + BACOVA_02429 0.74 +0.6
194,662 - BACOVA_02429 0.75 +0.4
194,667 + BACOVA_02429 0.76 +1.4
194,677 + BACOVA_02429 0.76 +1.0
194,677 + BACOVA_02429 0.76 +0.5
194,678 - BACOVA_02429 0.76 +0.3
194,678 - BACOVA_02429 0.76 -0.4
194,863 + +0.3
194,863 + -0.0
194,864 - +0.5
194,871 + +0.4
194,872 - -0.0
194,944 - +0.2
194,950 + +1.5
194,967 + -0.9
194,975 + +1.5
194,975 + +0.2
194,979 + -0.2
194,979 + -1.6
194,993 - +0.5
195,039 + -0.0
195,129 - -1.0
195,207 - -1.9
195,207 - +0.0
195,215 + -0.9
195,216 - -0.8
195,239 + -1.0
195,239 + +0.2
195,241 + -0.7
195,241 + -0.0
195,315 - -1.4
195,338 - -0.8
195,338 - -0.5
195,340 + -0.5
195,340 + -1.7
195,359 + BACOVA_02430 0.10 -0.7
195,445 - BACOVA_02430 0.17 -1.4
195,458 - BACOVA_02430 0.18 -0.8
195,477 + BACOVA_02430 0.20 +0.7
195,477 + BACOVA_02430 0.20 -0.1
195,478 - BACOVA_02430 0.20 +1.0
195,482 + BACOVA_02430 0.20 +1.0
195,488 + BACOVA_02430 0.20 -1.4
195,489 - BACOVA_02430 0.21 -1.0
195,489 - BACOVA_02430 0.21 -1.4
195,536 + BACOVA_02430 0.24 +0.4
195,550 - BACOVA_02430 0.25 +0.5
195,673 - BACOVA_02430 0.35 +0.4
195,675 - BACOVA_02430 0.35 -0.0
195,684 + BACOVA_02430 0.36 +1.4
195,685 - BACOVA_02430 0.36 -0.0
195,697 - BACOVA_02430 0.37 -0.0
195,719 - BACOVA_02430 0.38 -0.2
195,726 + BACOVA_02430 0.39 -0.9
195,737 + BACOVA_02430 0.40 +0.8
195,738 - BACOVA_02430 0.40 +1.0
195,738 - BACOVA_02430 0.40 +0.3
195,744 + BACOVA_02430 0.40 -0.3
195,745 - BACOVA_02430 0.40 -0.0
195,745 - BACOVA_02430 0.40 -3.0
195,775 + BACOVA_02430 0.43 -0.8
195,775 + BACOVA_02430 0.43 +0.6
195,797 + BACOVA_02430 0.45 +0.0
195,797 + BACOVA_02430 0.45 -0.7
195,797 + BACOVA_02430 0.45 -0.2
195,798 - BACOVA_02430 0.45 +0.6
195,798 - BACOVA_02430 0.45 +0.4
195,798 - BACOVA_02430 0.45 -0.6
195,798 - BACOVA_02430 0.45 +2.0
195,819 - BACOVA_02430 0.46 +0.6
195,831 + BACOVA_02430 0.47 -0.0

Or see this region's nucleotide sequence