Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05404

Experiment: MRS 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05402 and BACOVA_05403 are separated by 26 nucleotidesBACOVA_05403 and BACOVA_05404 are separated by 29 nucleotidesBACOVA_05404 and BACOVA_05405 are separated by 97 nucleotides BACOVA_05402: BACOVA_05402 - RecA protein, at 882,198 to 883,232 _05402 BACOVA_05403: BACOVA_05403 - antioxidant, AhpC/TSA family, at 883,259 to 883,714 _05403 BACOVA_05404: BACOVA_05404 - saccharopine dehydrogenase, at 883,744 to 884,937 _05404 BACOVA_05405: BACOVA_05405 - hypothetical protein, at 885,035 to 886,318 _05405 Position (kb) 883 884 885Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 882.847 kb on + strand, within BACOVA_05402at 882.884 kb on - strand, within BACOVA_05402at 882.998 kb on - strand, within BACOVA_05402at 882.998 kb on - strand, within BACOVA_05402at 883.014 kb on - strand, within BACOVA_05402at 883.014 kb on - strand, within BACOVA_05402at 883.094 kb on + strand, within BACOVA_05402at 883.095 kb on - strand, within BACOVA_05402at 883.115 kb on + strand, within BACOVA_05402at 883.140 kb on + strandat 883.171 kb on - strandat 883.237 kb on + strandat 883.238 kb on - strandat 883.238 kb on - strandat 883.244 kb on - strandat 883.248 kb on - strandat 883.354 kb on + strand, within BACOVA_05403at 883.374 kb on + strand, within BACOVA_05403at 883.374 kb on + strand, within BACOVA_05403at 883.375 kb on - strand, within BACOVA_05403at 883.375 kb on - strand, within BACOVA_05403at 883.375 kb on - strand, within BACOVA_05403at 883.375 kb on - strand, within BACOVA_05403at 883.387 kb on - strand, within BACOVA_05403at 883.528 kb on - strand, within BACOVA_05403at 883.538 kb on - strand, within BACOVA_05403at 883.538 kb on - strand, within BACOVA_05403at 883.542 kb on - strand, within BACOVA_05403at 883.542 kb on - strand, within BACOVA_05403at 883.594 kb on + strand, within BACOVA_05403at 883.595 kb on - strand, within BACOVA_05403at 883.615 kb on - strand, within BACOVA_05403at 883.637 kb on - strand, within BACOVA_05403at 883.647 kb on - strand, within BACOVA_05403at 883.697 kb on - strandat 883.704 kb on - strandat 883.704 kb on - strandat 883.715 kb on - strandat 883.715 kb on - strandat 883.726 kb on + strandat 883.740 kb on - strandat 883.746 kb on - strandat 883.834 kb on + strandat 883.835 kb on - strandat 883.930 kb on - strand, within BACOVA_05404at 883.976 kb on + strand, within BACOVA_05404at 883.977 kb on - strand, within BACOVA_05404at 883.977 kb on - strand, within BACOVA_05404at 883.977 kb on - strand, within BACOVA_05404at 883.983 kb on + strand, within BACOVA_05404at 883.984 kb on - strand, within BACOVA_05404at 884.143 kb on - strand, within BACOVA_05404at 884.158 kb on - strand, within BACOVA_05404at 884.158 kb on - strand, within BACOVA_05404at 884.178 kb on - strand, within BACOVA_05404at 884.178 kb on - strand, within BACOVA_05404at 884.259 kb on - strand, within BACOVA_05404at 884.295 kb on - strand, within BACOVA_05404at 884.352 kb on - strand, within BACOVA_05404at 884.419 kb on - strand, within BACOVA_05404at 884.419 kb on - strand, within BACOVA_05404at 884.437 kb on - strand, within BACOVA_05404at 884.444 kb on - strand, within BACOVA_05404at 884.444 kb on - strand, within BACOVA_05404at 884.444 kb on - strand, within BACOVA_05404at 884.456 kb on + strand, within BACOVA_05404at 884.475 kb on - strand, within BACOVA_05404at 884.482 kb on - strand, within BACOVA_05404at 884.489 kb on + strand, within BACOVA_05404at 884.490 kb on - strand, within BACOVA_05404at 884.499 kb on - strand, within BACOVA_05404at 884.539 kb on - strand, within BACOVA_05404at 884.622 kb on - strand, within BACOVA_05404at 884.671 kb on - strand, within BACOVA_05404at 884.735 kb on - strand, within BACOVA_05404at 884.752 kb on + strand, within BACOVA_05404at 884.752 kb on + strand, within BACOVA_05404at 884.753 kb on - strand, within BACOVA_05404at 884.793 kb on + strand, within BACOVA_05404at 884.861 kb on - strandat 884.920 kb on - strandat 884.955 kb on - strandat 884.960 kb on - strandat 884.981 kb on - strandat 884.992 kb on + strandat 884.992 kb on + strandat 885.013 kb on - strandat 885.036 kb on + strandat 885.087 kb on + strandat 885.088 kb on - strandat 885.200 kb on - strand, within BACOVA_05405at 885.243 kb on - strand, within BACOVA_05405at 885.271 kb on + strand, within BACOVA_05405at 885.271 kb on + strand, within BACOVA_05405at 885.293 kb on - strand, within BACOVA_05405at 885.325 kb on - strand, within BACOVA_05405at 885.325 kb on - strand, within BACOVA_05405at 885.380 kb on + strand, within BACOVA_05405at 885.386 kb on - strand, within BACOVA_05405at 885.410 kb on - strand, within BACOVA_05405at 885.488 kb on - strand, within BACOVA_05405at 885.548 kb on - strand, within BACOVA_05405at 885.654 kb on + strand, within BACOVA_05405at 885.655 kb on - strand, within BACOVA_05405at 885.758 kb on - strand, within BACOVA_05405at 885.812 kb on + strand, within BACOVA_05405at 885.812 kb on + strand, within BACOVA_05405at 885.813 kb on - strand, within BACOVA_05405at 885.813 kb on - strand, within BACOVA_05405at 885.813 kb on - strand, within BACOVA_05405at 885.814 kb on + strand, within BACOVA_05405at 885.815 kb on - strand, within BACOVA_05405at 885.816 kb on - strand, within BACOVA_05405at 885.844 kb on + strand, within BACOVA_05405at 885.845 kb on - strand, within BACOVA_05405

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Per-strain Table

Position Strand Gene LocusTag Fraction MRS 1 x (C) complex media
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882,847 + BACOVA_05402 0.63 -0.5
882,884 - BACOVA_05402 0.66 -0.7
882,998 - BACOVA_05402 0.77 +2.4
882,998 - BACOVA_05402 0.77 +0.4
883,014 - BACOVA_05402 0.79 -0.1
883,014 - BACOVA_05402 0.79 +0.9
883,094 + BACOVA_05402 0.87 -1.7
883,095 - BACOVA_05402 0.87 +1.6
883,115 + BACOVA_05402 0.89 -1.5
883,140 + +0.1
883,171 - -0.0
883,237 + -0.5
883,238 - -0.1
883,238 - +1.0
883,244 - -0.3
883,248 - +0.5
883,354 + BACOVA_05403 0.21 +0.4
883,374 + BACOVA_05403 0.25 -1.1
883,374 + BACOVA_05403 0.25 +0.5
883,375 - BACOVA_05403 0.25 +0.8
883,375 - BACOVA_05403 0.25 -0.1
883,375 - BACOVA_05403 0.25 +0.1
883,375 - BACOVA_05403 0.25 +0.1
883,387 - BACOVA_05403 0.28 -0.5
883,528 - BACOVA_05403 0.59 +0.4
883,538 - BACOVA_05403 0.61 -0.0
883,538 - BACOVA_05403 0.61 -0.6
883,542 - BACOVA_05403 0.62 -0.1
883,542 - BACOVA_05403 0.62 -0.0
883,594 + BACOVA_05403 0.73 +1.3
883,595 - BACOVA_05403 0.74 -0.5
883,615 - BACOVA_05403 0.78 -0.8
883,637 - BACOVA_05403 0.83 -0.4
883,647 - BACOVA_05403 0.85 +0.4
883,697 - -0.0
883,704 - -0.4
883,704 - -0.4
883,715 - -2.0
883,715 - -0.9
883,726 + +0.9
883,740 - +0.9
883,746 - +0.9
883,834 + +0.9
883,835 - +1.4
883,930 - BACOVA_05404 0.16 +0.1
883,976 + BACOVA_05404 0.19 -1.3
883,977 - BACOVA_05404 0.20 -1.6
883,977 - BACOVA_05404 0.20 +1.1
883,977 - BACOVA_05404 0.20 +1.9
883,983 + BACOVA_05404 0.20 -0.4
883,984 - BACOVA_05404 0.20 -0.7
884,143 - BACOVA_05404 0.33 -0.2
884,158 - BACOVA_05404 0.35 -0.9
884,158 - BACOVA_05404 0.35 +0.5
884,178 - BACOVA_05404 0.36 +1.1
884,178 - BACOVA_05404 0.36 +0.2
884,259 - BACOVA_05404 0.43 -0.6
884,295 - BACOVA_05404 0.46 -0.1
884,352 - BACOVA_05404 0.51 -1.1
884,419 - BACOVA_05404 0.57 -1.6
884,419 - BACOVA_05404 0.57 -0.8
884,437 - BACOVA_05404 0.58 -1.3
884,444 - BACOVA_05404 0.59 -1.3
884,444 - BACOVA_05404 0.59 -0.5
884,444 - BACOVA_05404 0.59 -0.6
884,456 + BACOVA_05404 0.60 +0.3
884,475 - BACOVA_05404 0.61 -0.5
884,482 - BACOVA_05404 0.62 -0.1
884,489 + BACOVA_05404 0.62 -1.0
884,490 - BACOVA_05404 0.62 -0.1
884,499 - BACOVA_05404 0.63 -0.1
884,539 - BACOVA_05404 0.67 +0.7
884,622 - BACOVA_05404 0.74 -0.6
884,671 - BACOVA_05404 0.78 +1.0
884,735 - BACOVA_05404 0.83 +0.1
884,752 + BACOVA_05404 0.84 +0.3
884,752 + BACOVA_05404 0.84 -1.5
884,753 - BACOVA_05404 0.85 -1.5
884,793 + BACOVA_05404 0.88 -3.2
884,861 - +1.4
884,920 - +0.3
884,955 - +0.6
884,960 - +1.6
884,981 - -1.3
884,992 + -1.4
884,992 + -1.5
885,013 - +0.3
885,036 + +0.6
885,087 + +0.7
885,088 - -1.4
885,200 - BACOVA_05405 0.13 +0.1
885,243 - BACOVA_05405 0.16 -0.4
885,271 + BACOVA_05405 0.18 +0.6
885,271 + BACOVA_05405 0.18 -0.1
885,293 - BACOVA_05405 0.20 +0.1
885,325 - BACOVA_05405 0.23 +0.4
885,325 - BACOVA_05405 0.23 +0.3
885,380 + BACOVA_05405 0.27 +1.0
885,386 - BACOVA_05405 0.27 +0.3
885,410 - BACOVA_05405 0.29 +1.1
885,488 - BACOVA_05405 0.35 +0.9
885,548 - BACOVA_05405 0.40 +0.9
885,654 + BACOVA_05405 0.48 +0.2
885,655 - BACOVA_05405 0.48 -0.3
885,758 - BACOVA_05405 0.56 -1.6
885,812 + BACOVA_05405 0.61 -0.3
885,812 + BACOVA_05405 0.61 -1.1
885,813 - BACOVA_05405 0.61 +0.0
885,813 - BACOVA_05405 0.61 -0.3
885,813 - BACOVA_05405 0.61 +1.3
885,814 + BACOVA_05405 0.61 +0.2
885,815 - BACOVA_05405 0.61 -0.9
885,816 - BACOVA_05405 0.61 +0.5
885,844 + BACOVA_05405 0.63 +0.1
885,845 - BACOVA_05405 0.63 -0.1

Or see this region's nucleotide sequence