Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04612

Experiment: MRS 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04609 and BACOVA_04610 overlap by 29 nucleotidesBACOVA_04610 and BACOVA_04611 are separated by 69 nucleotidesBACOVA_04611 and BACOVA_04612 are separated by 40 nucleotidesBACOVA_04612 and BACOVA_04613 are separated by 5 nucleotides BACOVA_04609: BACOVA_04609 - hypothetical protein, at 4,681 to 6,627 _04609 BACOVA_04610: BACOVA_04610 - hypothetical protein, at 6,599 to 6,754 _04610 BACOVA_04611: BACOVA_04611 - hypothetical protein, at 6,824 to 6,949 _04611 BACOVA_04612: BACOVA_04612 - LytTr DNA-binding domain protein, at 6,990 to 7,784 _04612 BACOVA_04613: BACOVA_04613 - histidine kinase, at 7,790 to 8,857 _04613 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 6.009 kb on + strand, within BACOVA_04609at 6.009 kb on + strand, within BACOVA_04609at 6.009 kb on + strand, within BACOVA_04609at 6.010 kb on - strand, within BACOVA_04609at 6.010 kb on - strand, within BACOVA_04609at 6.031 kb on + strand, within BACOVA_04609at 6.081 kb on + strand, within BACOVA_04609at 6.082 kb on - strand, within BACOVA_04609at 6.082 kb on - strand, within BACOVA_04609at 6.089 kb on - strand, within BACOVA_04609at 6.100 kb on - strand, within BACOVA_04609at 6.130 kb on - strand, within BACOVA_04609at 6.147 kb on + strand, within BACOVA_04609at 6.147 kb on + strand, within BACOVA_04609at 6.159 kb on + strand, within BACOVA_04609at 6.159 kb on + strand, within BACOVA_04609at 6.213 kb on + strand, within BACOVA_04609at 6.265 kb on - strand, within BACOVA_04609at 6.270 kb on + strand, within BACOVA_04609at 6.278 kb on - strand, within BACOVA_04609at 6.285 kb on + strand, within BACOVA_04609at 6.324 kb on - strand, within BACOVA_04609at 6.396 kb on + strand, within BACOVA_04609at 6.407 kb on + strand, within BACOVA_04609at 6.408 kb on - strand, within BACOVA_04609at 6.420 kb on + strand, within BACOVA_04609at 6.420 kb on + strand, within BACOVA_04609at 6.495 kb on - strandat 6.538 kb on + strandat 6.539 kb on - strandat 6.578 kb on + strandat 6.578 kb on + strandat 6.582 kb on + strandat 6.584 kb on + strandat 6.595 kb on - strandat 6.623 kb on - strandat 6.635 kb on + strand, within BACOVA_04610at 6.640 kb on + strand, within BACOVA_04610at 6.647 kb on - strand, within BACOVA_04610at 6.650 kb on + strand, within BACOVA_04610at 6.650 kb on + strand, within BACOVA_04610at 6.650 kb on + strand, within BACOVA_04610at 6.650 kb on + strand, within BACOVA_04610at 6.651 kb on - strand, within BACOVA_04610at 6.745 kb on + strandat 6.752 kb on + strandat 6.763 kb on + strandat 6.764 kb on - strandat 6.764 kb on - strandat 6.793 kb on - strandat 6.793 kb on - strandat 6.793 kb on - strandat 6.794 kb on + strandat 6.801 kb on - strandat 6.801 kb on - strandat 6.809 kb on - strandat 6.809 kb on - strandat 6.809 kb on - strandat 6.816 kb on + strandat 6.817 kb on - strandat 6.836 kb on - strandat 7.041 kb on - strandat 7.075 kb on + strand, within BACOVA_04612at 7.115 kb on + strand, within BACOVA_04612at 7.125 kb on - strand, within BACOVA_04612at 7.191 kb on - strand, within BACOVA_04612at 7.200 kb on + strand, within BACOVA_04612at 7.200 kb on + strand, within BACOVA_04612at 7.201 kb on - strand, within BACOVA_04612at 7.221 kb on + strand, within BACOVA_04612at 7.242 kb on + strand, within BACOVA_04612at 7.262 kb on + strand, within BACOVA_04612at 7.267 kb on + strand, within BACOVA_04612at 7.283 kb on + strand, within BACOVA_04612at 7.283 kb on + strand, within BACOVA_04612at 7.283 kb on + strand, within BACOVA_04612at 7.284 kb on - strand, within BACOVA_04612at 7.284 kb on - strand, within BACOVA_04612at 7.284 kb on - strand, within BACOVA_04612at 7.302 kb on + strand, within BACOVA_04612at 7.340 kb on + strand, within BACOVA_04612at 7.434 kb on + strand, within BACOVA_04612at 7.465 kb on - strand, within BACOVA_04612at 7.465 kb on - strand, within BACOVA_04612at 7.489 kb on - strand, within BACOVA_04612at 7.489 kb on - strand, within BACOVA_04612at 7.491 kb on + strand, within BACOVA_04612at 7.492 kb on - strand, within BACOVA_04612at 7.550 kb on - strand, within BACOVA_04612at 7.568 kb on + strand, within BACOVA_04612at 7.578 kb on - strand, within BACOVA_04612at 7.578 kb on - strand, within BACOVA_04612at 7.588 kb on - strand, within BACOVA_04612at 7.588 kb on - strand, within BACOVA_04612at 7.619 kb on + strand, within BACOVA_04612at 7.679 kb on + strand, within BACOVA_04612at 7.680 kb on - strand, within BACOVA_04612at 7.690 kb on - strand, within BACOVA_04612at 7.716 kb on + strandat 7.717 kb on - strandat 7.767 kb on + strandat 7.768 kb on - strandat 7.769 kb on + strandat 7.853 kb on + strandat 7.870 kb on + strandat 7.884 kb on + strandat 7.885 kb on - strandat 7.991 kb on - strand, within BACOVA_04613at 8.033 kb on + strand, within BACOVA_04613at 8.034 kb on - strand, within BACOVA_04613at 8.087 kb on + strand, within BACOVA_04613at 8.088 kb on + strand, within BACOVA_04613at 8.099 kb on + strand, within BACOVA_04613at 8.099 kb on + strand, within BACOVA_04613at 8.099 kb on + strand, within BACOVA_04613at 8.100 kb on - strand, within BACOVA_04613at 8.100 kb on - strand, within BACOVA_04613at 8.100 kb on - strand, within BACOVA_04613at 8.105 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.151 kb on - strand, within BACOVA_04613at 8.152 kb on + strand, within BACOVA_04613at 8.206 kb on + strand, within BACOVA_04613at 8.207 kb on - strand, within BACOVA_04613at 8.207 kb on - strand, within BACOVA_04613at 8.207 kb on - strand, within BACOVA_04613at 8.218 kb on + strand, within BACOVA_04613at 8.219 kb on - strand, within BACOVA_04613at 8.219 kb on - strand, within BACOVA_04613at 8.225 kb on + strand, within BACOVA_04613at 8.226 kb on - strand, within BACOVA_04613at 8.229 kb on - strand, within BACOVA_04613at 8.343 kb on - strand, within BACOVA_04613at 8.396 kb on + strand, within BACOVA_04613at 8.415 kb on - strand, within BACOVA_04613at 8.416 kb on + strand, within BACOVA_04613at 8.417 kb on - strand, within BACOVA_04613at 8.438 kb on - strand, within BACOVA_04613at 8.461 kb on + strand, within BACOVA_04613at 8.462 kb on - strand, within BACOVA_04613at 8.484 kb on + strand, within BACOVA_04613at 8.484 kb on + strand, within BACOVA_04613at 8.492 kb on + strand, within BACOVA_04613at 8.515 kb on + strand, within BACOVA_04613at 8.560 kb on + strand, within BACOVA_04613at 8.663 kb on + strand, within BACOVA_04613at 8.691 kb on - strand, within BACOVA_04613at 8.691 kb on - strand, within BACOVA_04613at 8.762 kb on + strandat 8.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MRS 1 x (C) complex media
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6,009 + BACOVA_04609 0.68 -0.4
6,009 + BACOVA_04609 0.68 +0.2
6,009 + BACOVA_04609 0.68 -0.4
6,010 - BACOVA_04609 0.68 +0.5
6,010 - BACOVA_04609 0.68 +0.4
6,031 + BACOVA_04609 0.69 -0.8
6,081 + BACOVA_04609 0.72 +0.5
6,082 - BACOVA_04609 0.72 +0.4
6,082 - BACOVA_04609 0.72 +0.6
6,089 - BACOVA_04609 0.72 +0.4
6,100 - BACOVA_04609 0.73 +0.3
6,130 - BACOVA_04609 0.74 -0.2
6,147 + BACOVA_04609 0.75 -0.2
6,147 + BACOVA_04609 0.75 +1.5
6,159 + BACOVA_04609 0.76 -0.4
6,159 + BACOVA_04609 0.76 -0.8
6,213 + BACOVA_04609 0.79 +0.5
6,265 - BACOVA_04609 0.81 -0.2
6,270 + BACOVA_04609 0.82 -0.8
6,278 - BACOVA_04609 0.82 +0.3
6,285 + BACOVA_04609 0.82 -0.3
6,324 - BACOVA_04609 0.84 +1.0
6,396 + BACOVA_04609 0.88 -0.9
6,407 + BACOVA_04609 0.89 +0.0
6,408 - BACOVA_04609 0.89 -0.3
6,420 + BACOVA_04609 0.89 -1.8
6,420 + BACOVA_04609 0.89 +0.3
6,495 - +0.1
6,538 + +0.5
6,539 - +0.3
6,578 + +0.0
6,578 + +0.6
6,582 + +0.2
6,584 + +0.6
6,595 - +1.2
6,623 - -1.1
6,635 + BACOVA_04610 0.23 +1.2
6,640 + BACOVA_04610 0.26 -1.0
6,647 - BACOVA_04610 0.31 +0.6
6,650 + BACOVA_04610 0.33 +0.4
6,650 + BACOVA_04610 0.33 -0.1
6,650 + BACOVA_04610 0.33 +0.3
6,650 + BACOVA_04610 0.33 +0.6
6,651 - BACOVA_04610 0.33 +0.5
6,745 + -0.2
6,752 + +0.8
6,763 + -0.0
6,764 - +0.3
6,764 - +0.2
6,793 - -0.6
6,793 - -2.2
6,793 - -0.4
6,794 + +0.0
6,801 - +0.8
6,801 - -0.2
6,809 - +0.6
6,809 - -0.4
6,809 - -0.2
6,816 + -0.4
6,817 - -0.9
6,836 - +0.2
7,041 - -0.2
7,075 + BACOVA_04612 0.11 +1.8
7,115 + BACOVA_04612 0.16 -0.2
7,125 - BACOVA_04612 0.17 +0.9
7,191 - BACOVA_04612 0.25 -0.2
7,200 + BACOVA_04612 0.26 +1.2
7,200 + BACOVA_04612 0.26 -0.9
7,201 - BACOVA_04612 0.27 +0.1
7,221 + BACOVA_04612 0.29 -1.5
7,242 + BACOVA_04612 0.32 +0.3
7,262 + BACOVA_04612 0.34 +0.1
7,267 + BACOVA_04612 0.35 +0.7
7,283 + BACOVA_04612 0.37 -0.1
7,283 + BACOVA_04612 0.37 +0.4
7,283 + BACOVA_04612 0.37 +0.2
7,284 - BACOVA_04612 0.37 +0.6
7,284 - BACOVA_04612 0.37 +0.3
7,284 - BACOVA_04612 0.37 -0.6
7,302 + BACOVA_04612 0.39 +0.4
7,340 + BACOVA_04612 0.44 +0.8
7,434 + BACOVA_04612 0.56 -0.8
7,465 - BACOVA_04612 0.60 +0.0
7,465 - BACOVA_04612 0.60 -0.1
7,489 - BACOVA_04612 0.63 +0.3
7,489 - BACOVA_04612 0.63 +0.4
7,491 + BACOVA_04612 0.63 +0.2
7,492 - BACOVA_04612 0.63 +0.7
7,550 - BACOVA_04612 0.70 +0.6
7,568 + BACOVA_04612 0.73 +0.1
7,578 - BACOVA_04612 0.74 -0.3
7,578 - BACOVA_04612 0.74 -1.8
7,588 - BACOVA_04612 0.75 +0.4
7,588 - BACOVA_04612 0.75 +1.4
7,619 + BACOVA_04612 0.79 -0.9
7,679 + BACOVA_04612 0.87 +0.8
7,680 - BACOVA_04612 0.87 -1.3
7,690 - BACOVA_04612 0.88 +0.3
7,716 + -0.3
7,717 - +0.2
7,767 + +0.3
7,768 - -0.5
7,769 + +0.5
7,853 + -0.8
7,870 + -0.3
7,884 + -0.4
7,885 - -0.5
7,991 - BACOVA_04613 0.19 +0.1
8,033 + BACOVA_04613 0.23 -0.4
8,034 - BACOVA_04613 0.23 +0.2
8,087 + BACOVA_04613 0.28 -1.2
8,088 + BACOVA_04613 0.28 -0.0
8,099 + BACOVA_04613 0.29 -0.6
8,099 + BACOVA_04613 0.29 -0.3
8,099 + BACOVA_04613 0.29 -0.2
8,100 - BACOVA_04613 0.29 +0.5
8,100 - BACOVA_04613 0.29 -0.5
8,100 - BACOVA_04613 0.29 -0.0
8,105 + BACOVA_04613 0.29 -0.6
8,150 + BACOVA_04613 0.34 -0.1
8,150 + BACOVA_04613 0.34 -0.4
8,150 + BACOVA_04613 0.34 -0.2
8,150 + BACOVA_04613 0.34 -0.5
8,150 + BACOVA_04613 0.34 -0.7
8,151 - BACOVA_04613 0.34 -0.3
8,152 + BACOVA_04613 0.34 -0.4
8,206 + BACOVA_04613 0.39 +0.2
8,207 - BACOVA_04613 0.39 -0.4
8,207 - BACOVA_04613 0.39 +0.0
8,207 - BACOVA_04613 0.39 -0.2
8,218 + BACOVA_04613 0.40 -0.4
8,219 - BACOVA_04613 0.40 -0.1
8,219 - BACOVA_04613 0.40 -0.6
8,225 + BACOVA_04613 0.41 +0.4
8,226 - BACOVA_04613 0.41 +0.3
8,229 - BACOVA_04613 0.41 +0.1
8,343 - BACOVA_04613 0.52 +0.5
8,396 + BACOVA_04613 0.57 -0.4
8,415 - BACOVA_04613 0.59 +0.7
8,416 + BACOVA_04613 0.59 -0.3
8,417 - BACOVA_04613 0.59 -0.9
8,438 - BACOVA_04613 0.61 -0.5
8,461 + BACOVA_04613 0.63 +0.5
8,462 - BACOVA_04613 0.63 -0.3
8,484 + BACOVA_04613 0.65 -0.7
8,484 + BACOVA_04613 0.65 -1.8
8,492 + BACOVA_04613 0.66 +0.7
8,515 + BACOVA_04613 0.68 +0.2
8,560 + BACOVA_04613 0.72 +0.2
8,663 + BACOVA_04613 0.82 +0.3
8,691 - BACOVA_04613 0.84 +1.1
8,691 - BACOVA_04613 0.84 -0.7
8,762 + -0.4
8,763 - +0.3

Or see this region's nucleotide sequence