Experiment: MRS 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02584 and BACOVA_02585 are separated by 12 nucleotides BACOVA_02585 and BACOVA_02586 are separated by 28 nucleotides BACOVA_02586 and BACOVA_02587 are separated by 27 nucleotides
BACOVA_02584: BACOVA_02584 - efflux ABC transporter, permease protein, at 349,865 to 352,243
_02584
BACOVA_02585: BACOVA_02585 - efflux ABC transporter, permease protein, at 352,256 to 354,652
_02585
BACOVA_02586: BACOVA_02586 - putative bacteriocin export ABC transporter, lactococcin 972 group, at 354,681 to 355,355
_02586
BACOVA_02587: BACOVA_02587 - efflux ABC transporter, permease protein, at 355,383 to 357,704
_02587
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 351.350 kb on - strand, within BACOVA_02584 at 351.365 kb on + strand, within BACOVA_02584 at 351.371 kb on - strand, within BACOVA_02584 at 351.419 kb on + strand, within BACOVA_02584 at 351.420 kb on - strand, within BACOVA_02584 at 351.425 kb on - strand, within BACOVA_02584 at 351.546 kb on - strand, within BACOVA_02584 at 351.546 kb on - strand, within BACOVA_02584 at 351.547 kb on + strand, within BACOVA_02584 at 351.566 kb on - strand, within BACOVA_02584 at 351.630 kb on + strand, within BACOVA_02584 at 351.644 kb on + strand, within BACOVA_02584 at 351.656 kb on - strand, within BACOVA_02584 at 351.658 kb on + strand, within BACOVA_02584 at 351.658 kb on + strand, within BACOVA_02584 at 351.659 kb on - strand, within BACOVA_02584 at 351.659 kb on - strand, within BACOVA_02584 at 351.659 kb on - strand, within BACOVA_02584 at 351.702 kb on + strand, within BACOVA_02584 at 351.715 kb on - strand, within BACOVA_02584 at 351.715 kb on - strand, within BACOVA_02584 at 351.723 kb on + strand, within BACOVA_02584 at 351.723 kb on + strand, within BACOVA_02584 at 351.725 kb on + strand, within BACOVA_02584 at 351.761 kb on + strand, within BACOVA_02584 at 351.810 kb on - strand, within BACOVA_02584 at 351.890 kb on - strand, within BACOVA_02584 at 351.890 kb on - strand, within BACOVA_02584 at 351.891 kb on + strand, within BACOVA_02584 at 351.895 kb on + strand, within BACOVA_02584 at 351.901 kb on - strand, within BACOVA_02584 at 352.039 kb on - strand at 352.039 kb on - strand at 352.039 kb on - strand at 352.084 kb on - strand at 352.122 kb on + strand at 352.123 kb on - strand at 352.123 kb on - strand at 352.127 kb on - strand at 352.194 kb on + strand at 352.194 kb on + strand at 352.248 kb on - strand at 352.252 kb on + strand at 352.260 kb on + strand at 352.261 kb on - strand at 352.342 kb on - strand at 352.357 kb on + strand at 352.361 kb on - strand at 352.362 kb on + strand at 352.363 kb on - strand at 352.363 kb on - strand at 352.363 kb on - strand at 352.366 kb on + strand at 352.366 kb on + strand at 352.366 kb on + strand at 352.367 kb on - strand at 352.367 kb on - strand at 352.367 kb on - strand at 352.367 kb on - strand at 352.367 kb on - strand at 352.370 kb on + strand at 352.387 kb on - strand at 352.394 kb on - strand at 352.416 kb on - strand at 352.444 kb on + strand at 352.505 kb on - strand, within BACOVA_02585 at 352.541 kb on - strand, within BACOVA_02585 at 352.541 kb on - strand, within BACOVA_02585 at 352.547 kb on + strand, within BACOVA_02585 at 352.547 kb on + strand, within BACOVA_02585 at 352.633 kb on - strand, within BACOVA_02585 at 352.639 kb on + strand, within BACOVA_02585 at 352.640 kb on - strand, within BACOVA_02585 at 352.662 kb on + strand, within BACOVA_02585 at 352.706 kb on - strand, within BACOVA_02585 at 352.709 kb on - strand, within BACOVA_02585 at 352.711 kb on - strand, within BACOVA_02585 at 352.735 kb on - strand, within BACOVA_02585 at 352.793 kb on - strand, within BACOVA_02585 at 352.808 kb on - strand, within BACOVA_02585 at 352.954 kb on + strand, within BACOVA_02585 at 352.973 kb on + strand, within BACOVA_02585 at 353.038 kb on + strand, within BACOVA_02585 at 353.039 kb on - strand, within BACOVA_02585 at 353.039 kb on - strand, within BACOVA_02585 at 353.042 kb on + strand, within BACOVA_02585 at 353.049 kb on + strand, within BACOVA_02585 at 353.051 kb on + strand, within BACOVA_02585 at 353.063 kb on + strand, within BACOVA_02585 at 353.064 kb on - strand, within BACOVA_02585 at 353.083 kb on + strand, within BACOVA_02585 at 353.083 kb on + strand, within BACOVA_02585 at 353.086 kb on - strand, within BACOVA_02585 at 353.086 kb on - strand, within BACOVA_02585 at 353.086 kb on - strand, within BACOVA_02585 at 353.110 kb on + strand, within BACOVA_02585 at 353.116 kb on + strand, within BACOVA_02585 at 353.154 kb on + strand, within BACOVA_02585 at 353.174 kb on - strand, within BACOVA_02585 at 353.229 kb on + strand, within BACOVA_02585 at 353.278 kb on - strand, within BACOVA_02585 at 353.298 kb on + strand, within BACOVA_02585 at 353.337 kb on + strand, within BACOVA_02585 at 353.404 kb on - strand, within BACOVA_02585 at 353.503 kb on + strand, within BACOVA_02585 at 353.503 kb on + strand, within BACOVA_02585 at 353.507 kb on + strand, within BACOVA_02585 at 353.507 kb on + strand, within BACOVA_02585 at 353.508 kb on - strand, within BACOVA_02585 at 353.546 kb on - strand, within BACOVA_02585 at 353.546 kb on - strand, within BACOVA_02585 at 353.573 kb on - strand, within BACOVA_02585 at 353.647 kb on + strand, within BACOVA_02585 at 353.653 kb on - strand, within BACOVA_02585 at 353.665 kb on + strand, within BACOVA_02585 at 353.665 kb on + strand, within BACOVA_02585 at 353.782 kb on + strand, within BACOVA_02585 at 353.784 kb on + strand, within BACOVA_02585 at 353.784 kb on + strand, within BACOVA_02585 at 353.785 kb on - strand, within BACOVA_02585 at 353.785 kb on - strand, within BACOVA_02585 at 353.789 kb on + strand, within BACOVA_02585 at 353.789 kb on + strand, within BACOVA_02585 at 353.790 kb on - strand, within BACOVA_02585 at 353.790 kb on - strand, within BACOVA_02585 at 353.803 kb on - strand, within BACOVA_02585 at 353.817 kb on + strand, within BACOVA_02585 at 353.858 kb on - strand, within BACOVA_02585 at 353.858 kb on - strand, within BACOVA_02585 at 353.863 kb on - strand, within BACOVA_02585 at 353.863 kb on - strand, within BACOVA_02585 at 353.981 kb on + strand, within BACOVA_02585 at 353.984 kb on - strand, within BACOVA_02585 at 353.984 kb on - strand, within BACOVA_02585 at 354.060 kb on + strand, within BACOVA_02585 at 354.060 kb on + strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.061 kb on - strand, within BACOVA_02585 at 354.110 kb on + strand, within BACOVA_02585 at 354.114 kb on + strand, within BACOVA_02585 at 354.206 kb on - strand, within BACOVA_02585 at 354.219 kb on + strand, within BACOVA_02585 at 354.242 kb on + strand, within BACOVA_02585 at 354.242 kb on + strand, within BACOVA_02585 at 354.264 kb on - strand, within BACOVA_02585 at 354.266 kb on - strand, within BACOVA_02585 at 354.330 kb on - strand, within BACOVA_02585 at 354.402 kb on + strand, within BACOVA_02585 at 354.513 kb on - strand at 354.513 kb on - strand at 354.574 kb on - strand at 354.574 kb on - strand at 354.592 kb on + strand at 354.599 kb on - strand at 354.637 kb on - strand at 354.674 kb on + strand at 354.680 kb on + strand at 354.687 kb on - strand at 354.687 kb on - strand at 354.912 kb on - strand, within BACOVA_02586 at 355.008 kb on + strand, within BACOVA_02586 at 355.011 kb on - strand, within BACOVA_02586 at 355.017 kb on - strand, within BACOVA_02586 at 355.055 kb on + strand, within BACOVA_02586 at 355.055 kb on + strand, within BACOVA_02586 at 355.346 kb on + strand at 355.349 kb on + strand at 355.365 kb on - strand at 355.379 kb on + strand at 355.423 kb on + strand at 355.423 kb on + strand at 355.424 kb on - strand at 355.428 kb on + strand at 355.448 kb on + strand at 355.449 kb on - strand at 355.449 kb on - strand at 355.449 kb on - strand at 355.451 kb on + strand at 355.452 kb on - strand at 355.495 kb on + strand at 355.522 kb on - strand at 355.555 kb on - strand at 355.601 kb on + strand at 355.627 kb on - strand, within BACOVA_02587
Per-strain Table
Position Strand Gene LocusTag Fraction MRS 1 x (C) complex media remove 351,350 - BACOVA_02584 0.62 -0.4 351,365 + BACOVA_02584 0.63 +0.1 351,371 - BACOVA_02584 0.63 -1.2 351,419 + BACOVA_02584 0.65 -1.1 351,420 - BACOVA_02584 0.65 +0.3 351,425 - BACOVA_02584 0.66 -1.7 351,546 - BACOVA_02584 0.71 +0.9 351,546 - BACOVA_02584 0.71 -0.5 351,547 + BACOVA_02584 0.71 +0.6 351,566 - BACOVA_02584 0.72 -0.7 351,630 + BACOVA_02584 0.74 -0.7 351,644 + BACOVA_02584 0.75 -0.7 351,656 - BACOVA_02584 0.75 +0.2 351,658 + BACOVA_02584 0.75 -0.7 351,658 + BACOVA_02584 0.75 +0.9 351,659 - BACOVA_02584 0.75 +0.9 351,659 - BACOVA_02584 0.75 +0.2 351,659 - BACOVA_02584 0.75 +0.6 351,702 + BACOVA_02584 0.77 +1.3 351,715 - BACOVA_02584 0.78 -0.7 351,715 - BACOVA_02584 0.78 +0.4 351,723 + BACOVA_02584 0.78 +1.6 351,723 + BACOVA_02584 0.78 -2.4 351,725 + BACOVA_02584 0.78 -0.6 351,761 + BACOVA_02584 0.80 +0.9 351,810 - BACOVA_02584 0.82 +0.3 351,890 - BACOVA_02584 0.85 +0.4 351,890 - BACOVA_02584 0.85 -1.4 351,891 + BACOVA_02584 0.85 -1.9 351,895 + BACOVA_02584 0.85 -0.1 351,901 - BACOVA_02584 0.86 -0.3 352,039 - -0.3 352,039 - +2.5 352,039 - +0.3 352,084 - -0.7 352,122 + -0.1 352,123 - +0.1 352,123 - +1.3 352,127 - +1.3 352,194 + -0.7 352,194 + +1.1 352,248 - -0.1 352,252 + -1.3 352,260 + -1.1 352,261 - +0.2 352,342 - -1.1 352,357 + -1.1 352,361 - -0.4 352,362 + +0.1 352,363 - -1.6 352,363 - +0.2 352,363 - -0.2 352,366 + -0.9 352,366 + +0.9 352,366 + +0.1 352,367 - -0.1 352,367 - -0.4 352,367 - -1.4 352,367 - +1.4 352,367 - +0.9 352,370 + -1.7 352,387 - -1.4 352,394 - -0.5 352,416 - +0.9 352,444 + -0.1 352,505 - BACOVA_02585 0.10 -0.5 352,541 - BACOVA_02585 0.12 -0.4 352,541 - BACOVA_02585 0.12 +0.9 352,547 + BACOVA_02585 0.12 +1.9 352,547 + BACOVA_02585 0.12 +1.6 352,633 - BACOVA_02585 0.16 -0.5 352,639 + BACOVA_02585 0.16 -0.0 352,640 - BACOVA_02585 0.16 +1.3 352,662 + BACOVA_02585 0.17 -1.1 352,706 - BACOVA_02585 0.19 +0.6 352,709 - BACOVA_02585 0.19 -0.7 352,711 - BACOVA_02585 0.19 -0.5 352,735 - BACOVA_02585 0.20 -0.5 352,793 - BACOVA_02585 0.22 -0.3 352,808 - BACOVA_02585 0.23 +0.6 352,954 + BACOVA_02585 0.29 -1.4 352,973 + BACOVA_02585 0.30 -0.9 353,038 + BACOVA_02585 0.33 -0.3 353,039 - BACOVA_02585 0.33 -0.7 353,039 - BACOVA_02585 0.33 +1.6 353,042 + BACOVA_02585 0.33 -1.7 353,049 + BACOVA_02585 0.33 -0.4 353,051 + BACOVA_02585 0.33 -0.1 353,063 + BACOVA_02585 0.34 -0.2 353,064 - BACOVA_02585 0.34 +0.9 353,083 + BACOVA_02585 0.35 +0.5 353,083 + BACOVA_02585 0.35 -0.3 353,086 - BACOVA_02585 0.35 +1.9 353,086 - BACOVA_02585 0.35 +0.9 353,086 - BACOVA_02585 0.35 +0.2 353,110 + BACOVA_02585 0.36 +0.5 353,116 + BACOVA_02585 0.36 -0.1 353,154 + BACOVA_02585 0.37 +0.5 353,174 - BACOVA_02585 0.38 -0.4 353,229 + BACOVA_02585 0.41 -0.1 353,278 - BACOVA_02585 0.43 +0.6 353,298 + BACOVA_02585 0.43 -1.1 353,337 + BACOVA_02585 0.45 -1.4 353,404 - BACOVA_02585 0.48 -0.7 353,503 + BACOVA_02585 0.52 -1.1 353,503 + BACOVA_02585 0.52 -0.3 353,507 + BACOVA_02585 0.52 -1.1 353,507 + BACOVA_02585 0.52 -2.1 353,508 - BACOVA_02585 0.52 -0.3 353,546 - BACOVA_02585 0.54 -1.1 353,546 - BACOVA_02585 0.54 +2.2 353,573 - BACOVA_02585 0.55 +2.1 353,647 + BACOVA_02585 0.58 +0.3 353,653 - BACOVA_02585 0.58 +0.3 353,665 + BACOVA_02585 0.59 -0.8 353,665 + BACOVA_02585 0.59 -1.1 353,782 + BACOVA_02585 0.64 -2.1 353,784 + BACOVA_02585 0.64 +1.5 353,784 + BACOVA_02585 0.64 +0.2 353,785 - BACOVA_02585 0.64 -0.3 353,785 - BACOVA_02585 0.64 -2.3 353,789 + BACOVA_02585 0.64 +0.0 353,789 + BACOVA_02585 0.64 +0.5 353,790 - BACOVA_02585 0.64 +1.5 353,790 - BACOVA_02585 0.64 -0.3 353,803 - BACOVA_02585 0.65 +0.3 353,817 + BACOVA_02585 0.65 +0.3 353,858 - BACOVA_02585 0.67 -2.1 353,858 - BACOVA_02585 0.67 -0.7 353,863 - BACOVA_02585 0.67 +1.1 353,863 - BACOVA_02585 0.67 -0.9 353,981 + BACOVA_02585 0.72 +0.9 353,984 - BACOVA_02585 0.72 +0.4 353,984 - BACOVA_02585 0.72 -1.2 354,060 + BACOVA_02585 0.75 -1.7 354,060 + BACOVA_02585 0.75 -3.1 354,061 - BACOVA_02585 0.75 +1.2 354,061 - BACOVA_02585 0.75 +0.7 354,061 - BACOVA_02585 0.75 -1.8 354,110 + BACOVA_02585 0.77 +0.9 354,114 + BACOVA_02585 0.78 -1.1 354,206 - BACOVA_02585 0.81 +0.1 354,219 + BACOVA_02585 0.82 +0.1 354,242 + BACOVA_02585 0.83 +0.7 354,242 + BACOVA_02585 0.83 +0.2 354,264 - BACOVA_02585 0.84 +0.1 354,266 - BACOVA_02585 0.84 +0.5 354,330 - BACOVA_02585 0.87 -0.4 354,402 + BACOVA_02585 0.90 +0.1 354,513 - +0.9 354,513 - +0.3 354,574 - +0.6 354,574 - +0.9 354,592 + -1.4 354,599 - -0.4 354,637 - -0.1 354,674 + -2.3 354,680 + -0.3 354,687 - -0.7 354,687 - -0.3 354,912 - BACOVA_02586 0.34 +1.9 355,008 + BACOVA_02586 0.48 +1.9 355,011 - BACOVA_02586 0.49 +1.9 355,017 - BACOVA_02586 0.50 -0.7 355,055 + BACOVA_02586 0.55 -1.9 355,055 + BACOVA_02586 0.55 +0.9 355,346 + -0.7 355,349 + +0.9 355,365 - -1.3 355,379 + -1.7 355,423 + +0.3 355,423 + +1.3 355,424 - -0.3 355,428 + -0.4 355,448 + +1.5 355,449 - +1.5 355,449 - +0.1 355,449 - -0.9 355,451 + -0.7 355,452 - +0.5 355,495 + +0.9 355,522 - +0.6 355,555 - -0.7 355,601 + -1.0 355,627 - BACOVA_02587 0.11 +1.9
Or see this region's nucleotide sequence