Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05208 and BACOVA_05209 are separated by 5 nucleotides BACOVA_05209 and BACOVA_05210 are separated by 6 nucleotides BACOVA_05210 and BACOVA_05211 are separated by 247 nucleotides
BACOVA_05208: BACOVA_05208 - hypothetical protein, at 711,075 to 711,602
_05208
BACOVA_05209: BACOVA_05209 - hypothetical protein, at 711,608 to 712,381
_05209
BACOVA_05210: BACOVA_05210 - preprotein translocase, SecG subunit, at 712,388 to 712,783
_05210
BACOVA_05211: BACOVA_05211 - transporter, major facilitator family protein, at 713,031 to 714,419
_05211
Position (kb) 712
713 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 711.605 kb on + strand at 712.262 kb on + strand, within BACOVA_05209 at 712.322 kb on + strand at 712.670 kb on + strand, within BACOVA_05210 at 712.781 kb on + strand at 712.864 kb on + strand at 712.978 kb on + strand at 713.000 kb on - strand at 713.009 kb on - strand at 713.026 kb on + strand at 713.026 kb on + strand at 713.026 kb on + strand at 713.109 kb on - strand at 713.109 kb on - strand at 713.113 kb on + strand at 713.114 kb on - strand at 713.114 kb on - strand at 713.121 kb on + strand at 713.122 kb on - strand at 713.137 kb on + strand at 713.176 kb on + strand, within BACOVA_05211 at 713.194 kb on - strand, within BACOVA_05211 at 713.225 kb on + strand, within BACOVA_05211 at 713.226 kb on - strand, within BACOVA_05211 at 713.226 kb on - strand, within BACOVA_05211 at 713.231 kb on - strand, within BACOVA_05211 at 713.237 kb on + strand, within BACOVA_05211 at 713.258 kb on + strand, within BACOVA_05211 at 713.340 kb on + strand, within BACOVA_05211 at 713.419 kb on - strand, within BACOVA_05211 at 713.423 kb on + strand, within BACOVA_05211 at 713.423 kb on + strand, within BACOVA_05211 at 713.423 kb on + strand, within BACOVA_05211 at 713.424 kb on - strand, within BACOVA_05211 at 713.424 kb on - strand, within BACOVA_05211 at 713.435 kb on - strand, within BACOVA_05211 at 713.453 kb on + strand, within BACOVA_05211 at 713.561 kb on - strand, within BACOVA_05211 at 713.594 kb on + strand, within BACOVA_05211 at 713.697 kb on + strand, within BACOVA_05211 at 713.697 kb on + strand, within BACOVA_05211 at 713.702 kb on + strand, within BACOVA_05211 at 713.769 kb on - strand, within BACOVA_05211 at 713.775 kb on + strand, within BACOVA_05211 at 713.777 kb on + strand, within BACOVA_05211 at 713.777 kb on + strand, within BACOVA_05211 at 713.777 kb on + strand, within BACOVA_05211 at 713.777 kb on + strand, within BACOVA_05211 at 713.778 kb on - strand, within BACOVA_05211 at 713.780 kb on + strand, within BACOVA_05211 at 713.781 kb on - strand, within BACOVA_05211
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 711,605 + -0.2 712,262 + BACOVA_05209 0.84 -0.5 712,322 + +0.3 712,670 + BACOVA_05210 0.71 -1.1 712,781 + -0.6 712,864 + -0.4 712,978 + -0.5 713,000 - -0.7 713,009 - +0.1 713,026 + +0.1 713,026 + +0.4 713,026 + +0.0 713,109 - -1.3 713,109 - -1.0 713,113 + +0.2 713,114 - +0.8 713,114 - +0.3 713,121 + -1.5 713,122 - -1.2 713,137 + -0.0 713,176 + BACOVA_05211 0.10 +0.8 713,194 - BACOVA_05211 0.12 -0.2 713,225 + BACOVA_05211 0.14 +0.7 713,226 - BACOVA_05211 0.14 +1.2 713,226 - BACOVA_05211 0.14 -0.2 713,231 - BACOVA_05211 0.14 +0.2 713,237 + BACOVA_05211 0.15 -1.6 713,258 + BACOVA_05211 0.16 -1.3 713,340 + BACOVA_05211 0.22 -0.2 713,419 - BACOVA_05211 0.28 +0.0 713,423 + BACOVA_05211 0.28 -1.2 713,423 + BACOVA_05211 0.28 +0.1 713,423 + BACOVA_05211 0.28 -1.0 713,424 - BACOVA_05211 0.28 -1.5 713,424 - BACOVA_05211 0.28 -1.0 713,435 - BACOVA_05211 0.29 -0.7 713,453 + BACOVA_05211 0.30 -0.2 713,561 - BACOVA_05211 0.38 +0.4 713,594 + BACOVA_05211 0.41 -3.0 713,697 + BACOVA_05211 0.48 -0.7 713,697 + BACOVA_05211 0.48 -0.2 713,702 + BACOVA_05211 0.48 +0.8 713,769 - BACOVA_05211 0.53 +0.8 713,775 + BACOVA_05211 0.54 -0.5 713,777 + BACOVA_05211 0.54 +0.1 713,777 + BACOVA_05211 0.54 +1.0 713,777 + BACOVA_05211 0.54 +0.8 713,777 + BACOVA_05211 0.54 -0.7 713,778 - BACOVA_05211 0.54 -0.9 713,780 + BACOVA_05211 0.54 +0.1 713,781 - BACOVA_05211 0.54 -0.2
Or see this region's nucleotide sequence