Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04027

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04025 and BACOVA_04026 are separated by 80 nucleotidesBACOVA_04026 and BACOVA_04027 overlap by 64 nucleotidesBACOVA_04027 and BACOVA_04028 are separated by 46 nucleotides BACOVA_04025: BACOVA_04025 - NADH:ubiquinone oxidoreductase, F subunit, at 358,928 to 360,202 _04025 BACOVA_04026: BACOVA_04026 - hypothetical protein, at 360,283 to 360,516 _04026 BACOVA_04027: BACOVA_04027 - hypothetical protein, at 360,453 to 360,632 _04027 BACOVA_04028: BACOVA_04028 - DEAD/DEAH box helicase, at 360,679 to 362,013 _04028 Position (kb) 360 361Strain fitness (log2 ratio) -3 -2 -1 0 1at 360.247 kb on + strandat 360.251 kb on + strandat 360.252 kb on - strandat 360.282 kb on - strandat 360.314 kb on - strand, within BACOVA_04026at 360.317 kb on - strand, within BACOVA_04026at 360.324 kb on - strand, within BACOVA_04026at 360.355 kb on + strand, within BACOVA_04026at 360.355 kb on + strand, within BACOVA_04026at 360.396 kb on + strand, within BACOVA_04026at 360.396 kb on + strand, within BACOVA_04026at 360.396 kb on + strand, within BACOVA_04026at 360.396 kb on + strand, within BACOVA_04026at 360.397 kb on - strand, within BACOVA_04026at 360.404 kb on - strand, within BACOVA_04026at 360.438 kb on - strand, within BACOVA_04026at 360.447 kb on + strand, within BACOVA_04026at 360.468 kb on - strandat 360.469 kb on + strandat 360.469 kb on + strandat 360.488 kb on + strandat 360.495 kb on + strandat 360.504 kb on - strandat 360.534 kb on + strand, within BACOVA_04027at 360.603 kb on + strand, within BACOVA_04027at 360.603 kb on + strand, within BACOVA_04027at 360.604 kb on - strand, within BACOVA_04027at 360.604 kb on - strand, within BACOVA_04027at 360.604 kb on - strand, within BACOVA_04027at 360.605 kb on + strand, within BACOVA_04027at 360.606 kb on - strand, within BACOVA_04027at 360.650 kb on + strandat 360.789 kb on + strandat 360.791 kb on + strandat 360.792 kb on - strandat 360.794 kb on + strandat 360.829 kb on + strand, within BACOVA_04028at 360.836 kb on + strand, within BACOVA_04028at 360.842 kb on + strand, within BACOVA_04028at 360.850 kb on - strand, within BACOVA_04028at 360.854 kb on + strand, within BACOVA_04028at 360.920 kb on + strand, within BACOVA_04028at 360.920 kb on + strand, within BACOVA_04028at 361.007 kb on + strand, within BACOVA_04028at 361.164 kb on + strand, within BACOVA_04028at 361.209 kb on + strand, within BACOVA_04028at 361.258 kb on - strand, within BACOVA_04028at 361.310 kb on + strand, within BACOVA_04028at 361.352 kb on + strand, within BACOVA_04028at 361.352 kb on + strand, within BACOVA_04028at 361.354 kb on + strand, within BACOVA_04028at 361.354 kb on + strand, within BACOVA_04028at 361.355 kb on - strand, within BACOVA_04028at 361.479 kb on + strand, within BACOVA_04028at 361.480 kb on - strand, within BACOVA_04028at 361.480 kb on - strand, within BACOVA_04028at 361.521 kb on + strand, within BACOVA_04028at 361.575 kb on + strand, within BACOVA_04028at 361.593 kb on + strand, within BACOVA_04028at 361.594 kb on - strand, within BACOVA_04028at 361.594 kb on - strand, within BACOVA_04028at 361.594 kb on - strand, within BACOVA_04028at 361.604 kb on - strand, within BACOVA_04028at 361.632 kb on + strand, within BACOVA_04028

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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360,247 + -0.4
360,251 + +0.5
360,252 - -0.7
360,282 - +0.3
360,314 - BACOVA_04026 0.13 +0.6
360,317 - BACOVA_04026 0.15 +0.1
360,324 - BACOVA_04026 0.18 +0.3
360,355 + BACOVA_04026 0.31 -1.6
360,355 + BACOVA_04026 0.31 -1.1
360,396 + BACOVA_04026 0.48 +0.6
360,396 + BACOVA_04026 0.48 -1.4
360,396 + BACOVA_04026 0.48 +0.9
360,396 + BACOVA_04026 0.48 -0.1
360,397 - BACOVA_04026 0.49 -0.3
360,404 - BACOVA_04026 0.52 -0.9
360,438 - BACOVA_04026 0.66 +0.9
360,447 + BACOVA_04026 0.70 +0.9
360,468 - +0.2
360,469 + -0.1
360,469 + +0.5
360,488 + +0.7
360,495 + +0.1
360,504 - -0.7
360,534 + BACOVA_04027 0.45 -2.9
360,603 + BACOVA_04027 0.83 +0.1
360,603 + BACOVA_04027 0.83 -0.8
360,604 - BACOVA_04027 0.84 -1.7
360,604 - BACOVA_04027 0.84 -1.1
360,604 - BACOVA_04027 0.84 +0.6
360,605 + BACOVA_04027 0.84 -0.8
360,606 - BACOVA_04027 0.85 -0.8
360,650 + +0.1
360,789 + +1.7
360,791 + -0.0
360,792 - -1.1
360,794 + -0.1
360,829 + BACOVA_04028 0.11 -0.7
360,836 + BACOVA_04028 0.12 -0.1
360,842 + BACOVA_04028 0.12 -0.7
360,850 - BACOVA_04028 0.13 -1.1
360,854 + BACOVA_04028 0.13 +0.3
360,920 + BACOVA_04028 0.18 +0.3
360,920 + BACOVA_04028 0.18 +0.3
361,007 + BACOVA_04028 0.25 -0.6
361,164 + BACOVA_04028 0.36 -0.1
361,209 + BACOVA_04028 0.40 -0.1
361,258 - BACOVA_04028 0.43 -0.7
361,310 + BACOVA_04028 0.47 +0.3
361,352 + BACOVA_04028 0.50 -0.3
361,352 + BACOVA_04028 0.50 -0.2
361,354 + BACOVA_04028 0.51 +0.7
361,354 + BACOVA_04028 0.51 +0.9
361,355 - BACOVA_04028 0.51 -1.1
361,479 + BACOVA_04028 0.60 -1.2
361,480 - BACOVA_04028 0.60 -0.7
361,480 - BACOVA_04028 0.60 -0.3
361,521 + BACOVA_04028 0.63 -0.3
361,575 + BACOVA_04028 0.67 -0.6
361,593 + BACOVA_04028 0.68 +0.5
361,594 - BACOVA_04028 0.69 -1.4
361,594 - BACOVA_04028 0.69 +0.9
361,594 - BACOVA_04028 0.69 -0.4
361,604 - BACOVA_04028 0.69 -1.1
361,632 + BACOVA_04028 0.71 -0.1

Or see this region's nucleotide sequence