Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03491 and BACOVA_03492 are separated by 216 nucleotides BACOVA_03492 and BACOVA_03493 are separated by 9 nucleotides
BACOVA_03491: BACOVA_03491 - hypothetical protein, at 247,613 to 249,346
_03491
BACOVA_03492: BACOVA_03492 - glycosyl hydrolase, family 43, at 249,563 to 250,609
_03492
BACOVA_03493: BACOVA_03493 - hypothetical protein, at 250,619 to 251,914
_03493
Position (kb) 249
250
251 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 248.564 kb on + strand, within BACOVA_03491 at 248.567 kb on + strand, within BACOVA_03491 at 248.567 kb on + strand, within BACOVA_03491 at 248.571 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.696 kb on - strand, within BACOVA_03491 at 248.703 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.732 kb on + strand, within BACOVA_03491 at 248.733 kb on - strand, within BACOVA_03491 at 248.733 kb on - strand, within BACOVA_03491 at 248.737 kb on + strand, within BACOVA_03491 at 248.738 kb on - strand, within BACOVA_03491 at 248.738 kb on - strand, within BACOVA_03491 at 248.745 kb on - strand, within BACOVA_03491 at 248.786 kb on - strand, within BACOVA_03491 at 248.837 kb on + strand, within BACOVA_03491 at 248.837 kb on + strand, within BACOVA_03491 at 248.839 kb on + strand, within BACOVA_03491 at 248.839 kb on + strand, within BACOVA_03491 at 248.840 kb on - strand, within BACOVA_03491 at 248.840 kb on - strand, within BACOVA_03491 at 248.895 kb on - strand, within BACOVA_03491 at 248.898 kb on - strand, within BACOVA_03491 at 248.916 kb on + strand, within BACOVA_03491 at 248.934 kb on - strand, within BACOVA_03491 at 248.934 kb on - strand, within BACOVA_03491 at 249.059 kb on - strand, within BACOVA_03491 at 249.059 kb on - strand, within BACOVA_03491 at 249.117 kb on - strand, within BACOVA_03491 at 249.117 kb on - strand, within BACOVA_03491 at 249.120 kb on + strand, within BACOVA_03491 at 249.153 kb on - strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.167 kb on + strand, within BACOVA_03491 at 249.168 kb on - strand, within BACOVA_03491 at 249.169 kb on + strand, within BACOVA_03491 at 249.239 kb on + strand at 249.240 kb on - strand at 249.241 kb on + strand at 249.254 kb on + strand at 249.255 kb on - strand at 249.283 kb on + strand at 249.297 kb on + strand at 249.298 kb on - strand at 249.298 kb on - strand at 249.303 kb on + strand at 249.305 kb on + strand at 249.305 kb on + strand at 249.306 kb on - strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.404 kb on - strand at 249.407 kb on - strand at 249.408 kb on + strand at 249.409 kb on - strand at 249.409 kb on - strand at 249.448 kb on + strand at 249.448 kb on + strand at 249.448 kb on + strand at 249.452 kb on - strand at 249.456 kb on + strand at 249.456 kb on + strand at 249.462 kb on + strand at 249.482 kb on + strand at 249.499 kb on - strand at 249.500 kb on + strand at 249.501 kb on - strand at 249.501 kb on - strand at 249.501 kb on - strand at 249.523 kb on + strand at 249.536 kb on - strand at 249.556 kb on + strand at 249.568 kb on + strand at 249.593 kb on - strand at 249.599 kb on - strand at 249.601 kb on - strand at 249.603 kb on + strand at 249.604 kb on - strand at 249.606 kb on + strand at 249.619 kb on + strand at 249.620 kb on - strand at 249.627 kb on + strand at 249.637 kb on - strand at 249.637 kb on - strand at 249.656 kb on + strand at 249.657 kb on - strand at 249.659 kb on - strand at 249.732 kb on + strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.735 kb on - strand, within BACOVA_03492 at 249.739 kb on + strand, within BACOVA_03492 at 249.749 kb on + strand, within BACOVA_03492 at 249.750 kb on - strand, within BACOVA_03492 at 249.752 kb on + strand, within BACOVA_03492 at 249.758 kb on + strand, within BACOVA_03492 at 249.759 kb on - strand, within BACOVA_03492 at 249.767 kb on + strand, within BACOVA_03492 at 249.767 kb on + strand, within BACOVA_03492 at 249.803 kb on - strand, within BACOVA_03492 at 249.820 kb on + strand, within BACOVA_03492 at 249.837 kb on + strand, within BACOVA_03492 at 249.846 kb on - strand, within BACOVA_03492 at 249.940 kb on - strand, within BACOVA_03492 at 249.965 kb on - strand, within BACOVA_03492 at 249.987 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.021 kb on + strand, within BACOVA_03492 at 250.148 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.185 kb on - strand, within BACOVA_03492 at 250.187 kb on - strand, within BACOVA_03492 at 250.187 kb on - strand, within BACOVA_03492 at 250.208 kb on + strand, within BACOVA_03492 at 250.208 kb on + strand, within BACOVA_03492 at 250.231 kb on + strand, within BACOVA_03492 at 250.276 kb on + strand, within BACOVA_03492 at 250.277 kb on - strand, within BACOVA_03492 at 250.282 kb on + strand, within BACOVA_03492 at 250.288 kb on + strand, within BACOVA_03492 at 250.288 kb on + strand, within BACOVA_03492 at 250.297 kb on + strand, within BACOVA_03492 at 250.303 kb on - strand, within BACOVA_03492 at 250.330 kb on + strand, within BACOVA_03492 at 250.330 kb on + strand, within BACOVA_03492 at 250.360 kb on + strand, within BACOVA_03492 at 250.361 kb on - strand, within BACOVA_03492 at 250.363 kb on + strand, within BACOVA_03492 at 250.364 kb on - strand, within BACOVA_03492 at 250.396 kb on + strand, within BACOVA_03492 at 250.436 kb on - strand, within BACOVA_03492 at 250.439 kb on + strand, within BACOVA_03492 at 250.440 kb on - strand, within BACOVA_03492 at 250.440 kb on - strand, within BACOVA_03492 at 250.472 kb on + strand, within BACOVA_03492 at 250.474 kb on + strand, within BACOVA_03492 at 250.474 kb on + strand, within BACOVA_03492 at 250.474 kb on + strand, within BACOVA_03492 at 250.475 kb on - strand, within BACOVA_03492 at 250.523 kb on + strand at 250.527 kb on + strand at 250.527 kb on + strand at 250.528 kb on - strand at 250.560 kb on + strand at 250.560 kb on + strand at 250.709 kb on - strand at 250.714 kb on + strand at 250.714 kb on + strand at 250.775 kb on + strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.777 kb on + strand, within BACOVA_03493 at 250.787 kb on + strand, within BACOVA_03493 at 250.803 kb on - strand, within BACOVA_03493 at 250.809 kb on + strand, within BACOVA_03493 at 250.849 kb on - strand, within BACOVA_03493 at 250.891 kb on + strand, within BACOVA_03493 at 250.894 kb on - strand, within BACOVA_03493 at 250.909 kb on - strand, within BACOVA_03493 at 250.923 kb on - strand, within BACOVA_03493 at 250.924 kb on + strand, within BACOVA_03493 at 250.924 kb on + strand, within BACOVA_03493 at 250.926 kb on + strand, within BACOVA_03493 at 250.926 kb on + strand, within BACOVA_03493 at 250.926 kb on + strand, within BACOVA_03493 at 250.926 kb on + strand, within BACOVA_03493 at 250.927 kb on - strand, within BACOVA_03493 at 250.927 kb on - strand, within BACOVA_03493 at 250.927 kb on - strand, within BACOVA_03493 at 250.927 kb on - strand, within BACOVA_03493 at 250.932 kb on + strand, within BACOVA_03493 at 250.961 kb on - strand, within BACOVA_03493 at 251.058 kb on - strand, within BACOVA_03493 at 251.079 kb on + strand, within BACOVA_03493 at 251.079 kb on + strand, within BACOVA_03493 at 251.080 kb on - strand, within BACOVA_03493 at 251.175 kb on + strand, within BACOVA_03493 at 251.175 kb on + strand, within BACOVA_03493 at 251.176 kb on - strand, within BACOVA_03493 at 251.195 kb on - strand, within BACOVA_03493 at 251.208 kb on - strand, within BACOVA_03493 at 251.219 kb on + strand, within BACOVA_03493 at 251.293 kb on + strand, within BACOVA_03493 at 251.335 kb on + strand, within BACOVA_03493 at 251.387 kb on + strand, within BACOVA_03493 at 251.387 kb on + strand, within BACOVA_03493 at 251.388 kb on - strand, within BACOVA_03493 at 251.434 kb on + strand, within BACOVA_03493 at 251.463 kb on - strand, within BACOVA_03493 at 251.465 kb on - strand, within BACOVA_03493 at 251.466 kb on + strand, within BACOVA_03493 at 251.466 kb on + strand, within BACOVA_03493 at 251.467 kb on - strand, within BACOVA_03493 at 251.467 kb on - strand, within BACOVA_03493 at 251.471 kb on - strand, within BACOVA_03493 at 251.471 kb on - strand, within BACOVA_03493 at 251.475 kb on - strand, within BACOVA_03493 at 251.553 kb on + strand, within BACOVA_03493 at 251.575 kb on + strand, within BACOVA_03493 at 251.608 kb on + strand, within BACOVA_03493 at 251.609 kb on - strand, within BACOVA_03493
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 248,564 + BACOVA_03491 0.55 -0.6 248,567 + BACOVA_03491 0.55 +0.9 248,567 + BACOVA_03491 0.55 -0.3 248,571 - BACOVA_03491 0.55 -0.2 248,661 - BACOVA_03491 0.60 -0.2 248,661 - BACOVA_03491 0.60 -1.1 248,661 - BACOVA_03491 0.60 -0.7 248,696 - BACOVA_03491 0.62 +0.6 248,703 + BACOVA_03491 0.63 -0.9 248,705 + BACOVA_03491 0.63 -0.5 248,705 + BACOVA_03491 0.63 -0.0 248,705 + BACOVA_03491 0.63 -0.7 248,706 - BACOVA_03491 0.63 -1.1 248,706 - BACOVA_03491 0.63 -0.8 248,706 - BACOVA_03491 0.63 +0.7 248,706 - BACOVA_03491 0.63 +0.5 248,732 + BACOVA_03491 0.65 +0.2 248,733 - BACOVA_03491 0.65 -0.3 248,733 - BACOVA_03491 0.65 -0.5 248,737 + BACOVA_03491 0.65 -0.7 248,738 - BACOVA_03491 0.65 +0.2 248,738 - BACOVA_03491 0.65 +0.5 248,745 - BACOVA_03491 0.65 +3.2 248,786 - BACOVA_03491 0.68 +0.3 248,837 + BACOVA_03491 0.71 -1.5 248,837 + BACOVA_03491 0.71 +0.9 248,839 + BACOVA_03491 0.71 -0.4 248,839 + BACOVA_03491 0.71 -0.7 248,840 - BACOVA_03491 0.71 -0.4 248,840 - BACOVA_03491 0.71 +0.9 248,895 - BACOVA_03491 0.74 +1.1 248,898 - BACOVA_03491 0.74 +0.5 248,916 + BACOVA_03491 0.75 +0.2 248,934 - BACOVA_03491 0.76 -0.9 248,934 - BACOVA_03491 0.76 +0.4 249,059 - BACOVA_03491 0.83 -0.3 249,059 - BACOVA_03491 0.83 +0.6 249,117 - BACOVA_03491 0.87 +0.7 249,117 - BACOVA_03491 0.87 +0.3 249,120 + BACOVA_03491 0.87 -1.7 249,153 - BACOVA_03491 0.89 +0.9 249,165 + BACOVA_03491 0.90 -1.7 249,165 + BACOVA_03491 0.90 +0.1 249,165 + BACOVA_03491 0.90 -2.2 249,165 + BACOVA_03491 0.90 -1.5 249,166 - BACOVA_03491 0.90 +0.3 249,166 - BACOVA_03491 0.90 +0.5 249,166 - BACOVA_03491 0.90 +0.3 249,166 - BACOVA_03491 0.90 +0.0 249,167 + BACOVA_03491 0.90 -0.1 249,168 - BACOVA_03491 0.90 +0.1 249,169 + BACOVA_03491 0.90 -0.9 249,239 + +0.6 249,240 - -0.5 249,241 + +0.2 249,254 + -0.3 249,255 - +0.3 249,283 + -1.2 249,297 + -0.7 249,298 - +0.1 249,298 - -0.2 249,303 + +0.3 249,305 + -0.6 249,305 + -1.0 249,306 - -0.3 249,307 + +0.2 249,307 + -0.1 249,307 + +0.3 249,307 + +0.9 249,404 - +0.8 249,407 - -0.2 249,408 + +0.1 249,409 - +0.5 249,409 - +0.2 249,448 + +0.6 249,448 + -1.5 249,448 + +0.3 249,452 - -0.5 249,456 + +0.9 249,456 + -0.3 249,462 + +0.2 249,482 + +0.6 249,499 - +0.3 249,500 + -0.4 249,501 - -0.3 249,501 - +0.3 249,501 - -0.9 249,523 + -1.0 249,536 - +0.4 249,556 + +0.6 249,568 + -3.9 249,593 - -0.8 249,599 - -2.2 249,601 - -0.6 249,603 + -1.9 249,604 - -0.1 249,606 + -1.9 249,619 + -0.9 249,620 - -0.5 249,627 + -1.8 249,637 - -0.1 249,637 - +0.5 249,656 + -0.7 249,657 - +0.7 249,659 - +1.5 249,732 + BACOVA_03492 0.16 +0.1 249,733 - BACOVA_03492 0.16 +0.5 249,733 - BACOVA_03492 0.16 -1.0 249,733 - BACOVA_03492 0.16 -2.4 249,735 - BACOVA_03492 0.16 +0.3 249,739 + BACOVA_03492 0.17 +0.8 249,749 + BACOVA_03492 0.18 +1.1 249,750 - BACOVA_03492 0.18 -0.6 249,752 + BACOVA_03492 0.18 +0.6 249,758 + BACOVA_03492 0.19 -0.5 249,759 - BACOVA_03492 0.19 +0.0 249,767 + BACOVA_03492 0.19 +0.9 249,767 + BACOVA_03492 0.19 +0.3 249,803 - BACOVA_03492 0.23 +0.9 249,820 + BACOVA_03492 0.25 +1.3 249,837 + BACOVA_03492 0.26 -0.9 249,846 - BACOVA_03492 0.27 -0.3 249,940 - BACOVA_03492 0.36 -0.8 249,965 - BACOVA_03492 0.38 -0.7 249,987 + BACOVA_03492 0.40 -1.1 250,016 + BACOVA_03492 0.43 -0.6 250,016 + BACOVA_03492 0.43 +1.2 250,016 + BACOVA_03492 0.43 +1.2 250,021 + BACOVA_03492 0.44 -0.4 250,148 + BACOVA_03492 0.56 +0.3 250,184 + BACOVA_03492 0.59 +0.4 250,184 + BACOVA_03492 0.59 +0.6 250,184 + BACOVA_03492 0.59 -1.7 250,184 + BACOVA_03492 0.59 +1.0 250,184 + BACOVA_03492 0.59 -0.2 250,185 - BACOVA_03492 0.59 -0.1 250,187 - BACOVA_03492 0.60 +0.4 250,187 - BACOVA_03492 0.60 -0.7 250,208 + BACOVA_03492 0.62 -0.8 250,208 + BACOVA_03492 0.62 -0.6 250,231 + BACOVA_03492 0.64 -0.1 250,276 + BACOVA_03492 0.68 +0.5 250,277 - BACOVA_03492 0.68 +1.9 250,282 + BACOVA_03492 0.69 +0.9 250,288 + BACOVA_03492 0.69 -1.5 250,288 + BACOVA_03492 0.69 -1.4 250,297 + BACOVA_03492 0.70 -1.4 250,303 - BACOVA_03492 0.71 +0.4 250,330 + BACOVA_03492 0.73 -0.3 250,330 + BACOVA_03492 0.73 +0.7 250,360 + BACOVA_03492 0.76 -0.1 250,361 - BACOVA_03492 0.76 +0.1 250,363 + BACOVA_03492 0.76 -1.3 250,364 - BACOVA_03492 0.77 -0.8 250,396 + BACOVA_03492 0.80 +0.5 250,436 - BACOVA_03492 0.83 +0.3 250,439 + BACOVA_03492 0.84 +2.5 250,440 - BACOVA_03492 0.84 +0.5 250,440 - BACOVA_03492 0.84 -1.0 250,472 + BACOVA_03492 0.87 +0.3 250,474 + BACOVA_03492 0.87 +0.1 250,474 + BACOVA_03492 0.87 +0.2 250,474 + BACOVA_03492 0.87 -0.1 250,475 - BACOVA_03492 0.87 -0.5 250,523 + -0.4 250,527 + +0.3 250,527 + -0.7 250,528 - -1.4 250,560 + -0.2 250,560 + +1.2 250,709 - -0.3 250,714 + -0.7 250,714 + +0.8 250,775 + BACOVA_03493 0.12 +0.2 250,776 - BACOVA_03493 0.12 +0.8 250,776 - BACOVA_03493 0.12 -1.2 250,776 - BACOVA_03493 0.12 -2.1 250,776 - BACOVA_03493 0.12 +1.0 250,776 - BACOVA_03493 0.12 -0.2 250,777 + BACOVA_03493 0.12 +0.6 250,787 + BACOVA_03493 0.13 +1.4 250,803 - BACOVA_03493 0.14 -0.5 250,809 + BACOVA_03493 0.15 -0.5 250,849 - BACOVA_03493 0.18 -0.7 250,891 + BACOVA_03493 0.21 +1.0 250,894 - BACOVA_03493 0.21 +0.0 250,909 - BACOVA_03493 0.22 -1.4 250,923 - BACOVA_03493 0.23 +1.7 250,924 + BACOVA_03493 0.24 +1.2 250,924 + BACOVA_03493 0.24 +0.0 250,926 + BACOVA_03493 0.24 +1.1 250,926 + BACOVA_03493 0.24 +0.3 250,926 + BACOVA_03493 0.24 -0.3 250,926 + BACOVA_03493 0.24 -0.2 250,927 - BACOVA_03493 0.24 -1.8 250,927 - BACOVA_03493 0.24 -0.4 250,927 - BACOVA_03493 0.24 +0.4 250,927 - BACOVA_03493 0.24 +0.1 250,932 + BACOVA_03493 0.24 -0.4 250,961 - BACOVA_03493 0.26 +1.9 251,058 - BACOVA_03493 0.34 -3.3 251,079 + BACOVA_03493 0.35 -0.1 251,079 + BACOVA_03493 0.35 -0.5 251,080 - BACOVA_03493 0.36 +0.3 251,175 + BACOVA_03493 0.43 -0.3 251,175 + BACOVA_03493 0.43 +0.6 251,176 - BACOVA_03493 0.43 -1.1 251,195 - BACOVA_03493 0.44 -0.4 251,208 - BACOVA_03493 0.45 +0.1 251,219 + BACOVA_03493 0.46 -1.3 251,293 + BACOVA_03493 0.52 +0.3 251,335 + BACOVA_03493 0.55 -1.1 251,387 + BACOVA_03493 0.59 +0.6 251,387 + BACOVA_03493 0.59 +0.1 251,388 - BACOVA_03493 0.59 -0.2 251,434 + BACOVA_03493 0.63 -0.4 251,463 - BACOVA_03493 0.65 +0.7 251,465 - BACOVA_03493 0.65 -0.7 251,466 + BACOVA_03493 0.65 +0.3 251,466 + BACOVA_03493 0.65 -2.7 251,467 - BACOVA_03493 0.65 +0.5 251,467 - BACOVA_03493 0.65 +1.9 251,471 - BACOVA_03493 0.66 -1.1 251,471 - BACOVA_03493 0.66 +1.2 251,475 - BACOVA_03493 0.66 -0.1 251,553 + BACOVA_03493 0.72 -0.1 251,575 + BACOVA_03493 0.74 -0.2 251,608 + BACOVA_03493 0.76 +0.9 251,609 - BACOVA_03493 0.76 +0.6
Or see this region's nucleotide sequence